Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0003898

Physical Location & Seq

Genomic Coordinates Reverse (-)

19594058 .. 19596260

Gene Structure 2203 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG113600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGCAATCAAAGATCAGTGCCTTCTTCAAACCCTCTTCTTCTTCTTCTTCTTCTGTTTCACCCAAACCAGCAGACCCACCTCCCATTTTCGACGACGACGGCCAGGAATTGAGCATCTGGGAAAAGAAGCAACACCAACAATTCTCCACCTACAAGCGAAGAGCTCCAAACCCACCAAGGGGTGGGATGACCAAGAACAAGAAGAGAAGCTATGCTCAGTACCATCTAGACTTGGGTCAGTCTGACTTTCTTCTGCACACTTGTTCCGCATGTGGCGTCATGTATGTGACTGGAGATGAAGAGGATGAGAAGGCTCACAAGGGATTTCACAATGACTATACCCGCGGAATACAATTCAAGGTGTATCTGTTTGTTTTGTCCGCAAGAATTGTAGGCTGTCTGGTTGCCGAACCTATAACAAAAGCACACAAAGTCCTATCTTGTGCAGTTGATGGAAGCTCAAGTTTTGCTAGTACGGCAACAAAGAAAACAAAGTTAACTACTCTCCAGTTTGGGGAAATCAAATTTCACAGGGAAGTCATTAGAAAAGCCCCTTCTGCTCCTGAACCATTGAATGAGTGTTTCACTGGTGCTATCGTTTGTGAAAAGGAAGCAGTACCCGCTGTCTGTGGCATTAGAGCCATTTGGGTCACTCCAGCTAACAGAAGAAAACACATAGCCACCCACTTATTAGATGCCCTGAGGAAAAGTTTCTGCATGGGATTTGTCCTTGAGCACTCTCAGTTGGCATTCTCTCCACTAACATCGGCTGGAAACGCATTGGTATCAAATTATATTGGCAGTGGACATTTCTTGGTGTACAACACAAACAATGTGGTCTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000070 GO:0000278 GO:0000280 GO:0000724 GO:0000725 GO:0000819 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0007135 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009553 GO:0009790 GO:0009791 GO:0009793 GO:0009908 GO:0009956 GO:0009987 GO:0010154 GO:0016043 GO:0016407 GO:0016740 GO:0016746 GO:0016747 GO:0022402 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0034085 GO:0034089 GO:0034641 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0045132 GO:0045144 GO:0046483 GO:0048229 GO:0048285 GO:0048316 GO:0048364 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048589 GO:0048608 GO:0048609 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051177 GO:0051276 GO:0051321 GO:0051716 GO:0060771 GO:0060772 GO:0061458 GO:0061983 GO:0070192 GO:0071704 GO:0071840 GO:0080186 GO:0090304 GO:0090567 GO:0098813 GO:0099402 GO:0140013 GO:0140014 GO:1901360 GO:1903046 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_13 zf-C2H2_3

Protein Analysis

281

Amino Acids

30.96

Weight (kDa)

9.2

Isoelectric Point (pI)

47.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_3	PF13878	73 - 111	8.3e-15	zinc-finger of acetyl-transferase ESCO
Acetyltransf_13	PF13880	206 - 274	1.9e-25	ESCO1/2 acetyl-transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003898)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31400 AT4G31400
fragaria_vesca	FvH4_6g20270
malus_domestica	MD10G1054000.v1.1 MD12G1039800.v1.1 MD14G1038400.v1.1
prunus_persica	Prupe.7G095100_v2.0.a1
pyrus_communis	pycom01g00980 pycom12g03380
rosa_chinensis	RchiOBHm_Chr1g0331051 RchiOBHm_Chr3g0475861
rosa_laevigata	RLG00000001160 RLG00000023805 RLG00000029757
rosa_multiflora	Rmu_sc0000539.1_g000091 Rmu_sc0000539.1_g000092 Rmu_sc0002515.1_g000002
rosa_roxburghii	Rroxscaffold_3G00226030 Rroxscaffold_4G00319510 Rroxscaffold_6G00405780
rosa_rugosa	Rorug01G0093800 Rorug03G0151800 Rorug07G0290800
rosa_samantha	Rh1AG113600 Rh1CG110400 Rh1DG119200 Rh3AG201800 Rh3BG232300 Rh3CG226900 Rh3DG227400 Rh7BG417600 Rh7CG466100
rosa_wichuraiana	Rw1G009260 Rw3G018370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	182
AccII	CGCG	1 cut(s)	345
AciI	CCGC	5 cut(s)	267, 343, 345, 381, 621
AcoI	YGGCCR	1 cut(s)	100
AcsI	RAATTY	1 cut(s)	524
AcyI	GRCGYC	1 cut(s)	276
AfaI	GTAC	4 cut(s)	221, 475, 618, 821
AfiI	CCNNNNNNNGG	4 cut(s)	178, 179, 182, 514
AgsI	TTSAA	3 cut(s)	28, 358, 574
AjnI	CCWGG	1 cut(s)	102
AluBI	AGCT	4 cut(s)	164, 210, 459, 659
AluI	AGCT	4 cut(s)	164, 210, 459, 659
Alw21I	GWGCWC	2 cut(s)	166, 738
AoxI	GGCC	1 cut(s)	100
ApoI	RAATTY	1 cut(s)	524
Asp700I	GAANNNNTTC	1 cut(s)	710
AsuHPI	GGTGA	1 cut(s)	51
AxyI	CCTNAGG	1 cut(s)	701
BanII	GRGCYC	1 cut(s)	166
Bbv12I	GWGCWC	2 cut(s)	166, 738
BccI	CCATC	2 cut(s)	231, 446
BceAI	ACGGC	2 cut(s)	115, 492
BciT130I	CCWGG	1 cut(s)	104
BfaI	CTAG	2 cut(s)	227, 471
Bme1390I	CCNGG	1 cut(s)	104
BmrFI	CCNGG	1 cut(s)	104
BmsI	GCATC	2 cut(s)	123, 685
BoxI	GACNNNNGTC	1 cut(s)	234
BpmI	CTGGAG	3 cut(s)	312, 491, 639
BpuEI	CTTGAG	2 cut(s)	445, 752
BsaHI	GRCGYC	1 cut(s)	276
BsaJI	CCNNGG	2 cut(s)	176, 343
Bsc4I	CCNNNNNNNGG	4 cut(s)	178, 179, 182, 514
Bse1I	ACTGG	3 cut(s)	295, 508, 592
Bse21I	CCTNAGG	1 cut(s)	701
BseBI	CCWGG	1 cut(s)	104
BseDI	CCNNGG	2 cut(s)	176, 343
BseGI	GGATG	2 cut(s)	192, 310
BseLI	CCNNNNNNNGG	4 cut(s)	178, 179, 182, 514
BseMII	CTCAG	3 cut(s)	230, 692, 755
BseNI	ACTGG	3 cut(s)	295, 508, 592
BsgI	GTGCAG	2 cut(s)	239, 465
Bsh1236I	CGCG	1 cut(s)	345
BshFI	GGCC	1 cut(s)	102
BsiHKAI	GWGCWC	2 cut(s)	166, 738
BslI	CCNNNNNNNGG	4 cut(s)	178, 179, 182, 514
BsmI	GAATGC	1 cut(s)	749
BsnI	GGCC	1 cut(s)	102
Bsp1286I	GDGCHC	2 cut(s)	166, 738
Bsp1407I	TGTACA	1 cut(s)	819
Bsp143I	GATC	1 cut(s)	12
BspACI	CCGC	5 cut(s)	267, 343, 345, 381, 621
BspANI	GGCC	1 cut(s)	102
BspCNI	CTCAG	3 cut(s)	229, 693, 754
BspFNI	CGCG	1 cut(s)	345
BspQI	GCTCTTC	1 cut(s)	154
BsrGI	TGTACA	1 cut(s)	819
BsrI	ACTGG	3 cut(s)	295, 508, 592
BssECI	CCNNGG	2 cut(s)	176, 343
BssMI	GATC	1 cut(s)	12
BssNI	GRCGYC	1 cut(s)	276
BssT1I	CCWWGG	1 cut(s)	176
Bst2UI	CCWGG	1 cut(s)	104
Bst6I	CTCTTC	4 cut(s)	40, 154, 197, 294
BstACI	GRCGYC	1 cut(s)	276
BstAUI	TGTACA	1 cut(s)	819
BstDEI	CTNAG	3 cut(s)	216, 701, 741
BstDSI	CCRYGG	1 cut(s)	343
BstF5I	GGATG	2 cut(s)	192, 310
BstFNI	CGCG	1 cut(s)	345
BstKTI	GATC	1 cut(s)	15
BstMBI	GATC	1 cut(s)	12
BstMWI	GCNNNNNNNGC	4 cut(s)	476, 557, 620, 776
BstNI	CCWGG	1 cut(s)	104
BstNSI	RCATGY	1 cut(s)	273
BstPAI	GACNNNNGTC	1 cut(s)	234
BstSCI	CCNGG	1 cut(s)	102
BstUI	CGCG	1 cut(s)	345
Bsu36I	CCTNAGG	1 cut(s)	701
BsuRI	GGCC	1 cut(s)	102
BtgI	CCRYGG	1 cut(s)	343
BtsCI	GGATG	2 cut(s)	192, 310
BtsI	GCAGTG	1 cut(s)	808
BtsIMutI	CAGTG	3 cut(s)	22, 585, 808
Cfr42I	CCGCGG	1 cut(s)	346
CseI	GACGC	1 cut(s)	265
Csp6I	GTAC	4 cut(s)	220, 474, 617, 820
CspCI	CAANNNNNGTGG	1 cut(s)	816
CviAII	CATG	3 cut(s)	270, 280, 718
CviQI	GTAC	4 cut(s)	220, 474, 617, 820
DdeI	CTNAG	3 cut(s)	216, 701, 741
DpnI	GATC	1 cut(s)	14
DpnII	GATC	1 cut(s)	12
EaeI	YGGCCR	1 cut(s)	100
Eam1104I	CTCTTC	4 cut(s)	40, 154, 197, 294
EarI	CTCTTC	4 cut(s)	40, 154, 197, 294
Ecl136II	GAGCTC	1 cut(s)	164
Eco130I	CCWWGG	1 cut(s)	176
Eco24I	GRGCYC	1 cut(s)	166
Eco53kI	GAGCTC	1 cut(s)	164
Eco81I	CCTNAGG	1 cut(s)	701
EcoICRI	GAGCTC	1 cut(s)	164
EcoRII	CCWGG	1 cut(s)	102
EcoT14I	CCWWGG	1 cut(s)	176
EcoT38I	GRGCYC	1 cut(s)	166
ErhI	CCWWGG	1 cut(s)	176
FaeI	CATG	3 cut(s)	273, 283, 721
FatI	CATG	3 cut(s)	269, 279, 717
FauI	CCCGC	2 cut(s)	350, 628
FokI	GGATG	2 cut(s)	199, 317
FriOI	GRGCYC	1 cut(s)	166
FspBI	CTAG	2 cut(s)	227, 471
GsuI	CTGGAG	3 cut(s)	312, 491, 639
HaeIII	GGCC	1 cut(s)	102
HgaI	GACGC	1 cut(s)	265
Hin1I	GRCGYC	1 cut(s)	276
Hin1II	CATG	3 cut(s)	273, 283, 721
HincII	GTYRAC	1 cut(s)	498
HindII	GTYRAC	1 cut(s)	498
HpaI	GTTAAC	1 cut(s)	498
HphI	GGTGA	1 cut(s)	51
Hpy166II	GTNNAC	3 cut(s)	498, 806, 820
Hpy188I	TCNGA	1 cut(s)	244
Hpy188III	TCNNGA	2 cut(s)	227, 563
Hpy8I	GTNNAC	3 cut(s)	498, 806, 820
Hpy99I	CGWCG	3 cut(s)	95, 98, 101
HpyAV	CCTTC	3 cut(s)	31, 304, 564
HpyCH4V	TGCA	4 cut(s)	4, 256, 446, 717
HpyF10VI	GCNNNNNNNGC	4 cut(s)	476, 557, 620, 776
HpyF3I	CTNAG	3 cut(s)	216, 701, 741
Hsp92I	GRCGYC	1 cut(s)	276
Hsp92II	CATG	3 cut(s)	273, 283, 721
KspAI	GTTAAC	1 cut(s)	498
KspI	CCGCGG	1 cut(s)	346
Kzo9I	GATC	1 cut(s)	12
LguI	GCTCTTC	1 cut(s)	154
LmnI	GCTCC	2 cut(s)	169, 565
LweI	GCATC	2 cut(s)	123, 685
MaeI	CTAG	2 cut(s)	227, 471
MaeIII	GTNAC	2 cut(s)	286, 649
MalI	GATC	1 cut(s)	14
MboI	GATC	1 cut(s)	12
MhlI	GDGCHC	2 cut(s)	166, 738
MluCI	AATT	6 cut(s)	107, 140, 353, 387, 524, 790
MnlI	CCTC	4 cut(s)	43, 90, 295, 696
MroXI	GAANNNNTTC	1 cut(s)	710
MseI	TTAA	1 cut(s)	497
MslI	CAYNNNNRTG	1 cut(s)	284
MspA1I	CMGCKG	2 cut(s)	345, 623
MspR9I	CCNGG	1 cut(s)	104
Mva1269I	GAATGC	1 cut(s)	749
MvaI	CCWGG	1 cut(s)	104
MvnI	CGCG	1 cut(s)	345
MwoI	GCNNNNNNNGC	4 cut(s)	476, 557, 620, 776
NdeII	GATC	1 cut(s)	12
NlaIII	CATG	3 cut(s)	273, 283, 721
NmuCI	GTSAC	2 cut(s)	286, 649
NspI	RCATGY	1 cut(s)	273
PciSI	GCTCTTC	1 cut(s)	154
PctI	GAATGC	1 cut(s)	749
PdmI	GAANNNNTTC	1 cut(s)	710
PflMI	CCANNNNNTGG	1 cut(s)	182
PshAI	GACNNNNGTC	1 cut(s)	234
Psp124BI	GAGCTC	1 cut(s)	166
Psp6I	CCWGG	1 cut(s)	102
PspGI	CCWGG	1 cut(s)	102
RsaI	GTAC	4 cut(s)	221, 475, 618, 821
RsaNI	GTAC	4 cut(s)	220, 474, 617, 820
RseI	CAYNNNNRTG	1 cut(s)	284
SacI	GAGCTC	1 cut(s)	166
SacII	CCGCGG	1 cut(s)	346
SapI	GCTCTTC	1 cut(s)	154
SaqAI	TTAA	1 cut(s)	497
Sau3AI	GATC	1 cut(s)	12
ScrFI	CCNGG	1 cut(s)	104
SduI	GDGCHC	2 cut(s)	166, 738
SetI	ASST	8 cut(s)	82, 152, 166, 212, 363, 415, 461, 661
SfaNI	GCATC	2 cut(s)	123, 685
Sfr303I	CCGCGG	1 cut(s)	346
SgrBI	CCGCGG	1 cut(s)	346
SmiMI	CAYNNNNRTG	1 cut(s)	284
SmlI	CTYRAG	2 cut(s)	460, 731
SmoI	CTYRAG	2 cut(s)	460, 731
Sse9I	AATT	6 cut(s)	107, 140, 353, 387, 524, 790
SsiI	CCGC	5 cut(s)	267, 343, 345, 381, 621
SspMI	CTAG	2 cut(s)	227, 471
SstI	GAGCTC	1 cut(s)	166
StyD4I	CCNGG	1 cut(s)	102
StyI	CCWWGG	1 cut(s)	176
TaqI	TCGA	1 cut(s)	90
TasI	AATT	6 cut(s)	107, 140, 353, 387, 524, 790
TatI	WGTACW	1 cut(s)	819
Tru1I	TTAA	1 cut(s)	497
Tru9I	TTAA	1 cut(s)	497
TscAI	CASTG	3 cut(s)	22, 592, 808
TseFI	GTSAC	2 cut(s)	286, 649
Tsp45I	GTSAC	2 cut(s)	286, 649
TspDTI	ATGAA	1 cut(s)	312
TspRI	CASTG	3 cut(s)	22, 592, 808
Van91I	CCANNNNNTGG	1 cut(s)	182
XapI	RAATTY	1 cut(s)	524
XbaI	TCTAGA	1 cut(s)	226
XceI	RCATGY	1 cut(s)	273
XmnI	GAANNNNTTC	1 cut(s)	710
XspI	CTAG	2 cut(s)	227, 471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.