Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0003898

Physical Location & Seq

Genomic Coordinates Reverse (-)

19892582 .. 19895425

Gene Structure 2844 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG201800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGCAATCAAAGATCAGTGCCTTCTTCAAACCCTCTTCTTCTTCTGTTTCCCCCAAACCAGCAGACCCTCCTCCCATTTTCGACGACGACGGCCAGGAATTGAGCATATGGGAAAAGAAGCAACACCAGCAATTCTCCACCTACAAGCGAAGAGCTCCAAACCCACCAAGGGGTGGGAGTGAGTGTAGTTGGGATAACCAGTTGGCAAAGACACCCATTTCGGATGTCGACTCTCCCAAGCCTGAATCGACAGTATTGGGAAAGACAGTGACCAAGAACAAGAAGAGAAGCTATGCTCAGTACCATTTAGACTTGGGTCAGTCTGACTTTCTTCTGCACACTTGTTCCGCATGTGGGGTCATGTATGTGACTGGAGATGAAGAGGATGAGAAGGCTCACAAGGGATTTCACAATGACTATACCCGCGGAATACAATTCAAGGGTTGGTGCAATGAGAGGGTTGTTCATTCGCTTAAAGTTGGAGGAGGTCGGATTCTTTTGGTGTTGGATGGTGATCCTCCTGCTCAGAGGAACAAGGTTGAGAAAGTTGTGACAATGATGGAGACTGAGCTTGGCAGTGGGTGGATTCTGCCCAAGTTGTTTAAGGTGTATCTGTTTGTTTTGTCCGCAAGAATTGTAGGCTGTCTGGTTGCCGAACCTATAACAAAAGCACACAAAGTCCTATCTTGTGCAGTCGATGGAAGCTCTAGTTCTGCTAGTACGGCAACAAATAAAACAAAGTTAACTACTCTCCAGTTTGGGGAAATCAAATTTCACAGGGAAGTCATTAGAAAAGCCCCTTCTGCTCCTGAACCATTGAATGAGTGTTTCACTGGTGCTATCGTTTGTGAAAAGGAAGCAGTACCCGCTGTCTGTGGCATTAGAGCCATTTGGGTCACTCCAGCTAACAGAAGAAAACACATAGCCACCCACTTATTGGATGCCCTGAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000070 GO:0000278 GO:0000280 GO:0000724 GO:0000725 GO:0000819 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0007135 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009553 GO:0009790 GO:0009791 GO:0009793 GO:0009908 GO:0009956 GO:0009987 GO:0010154 GO:0016043 GO:0016407 GO:0016740 GO:0016746 GO:0016747 GO:0022402 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0034085 GO:0034089 GO:0034641 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0045132 GO:0045144 GO:0046483 GO:0048229 GO:0048285 GO:0048316 GO:0048364 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048589 GO:0048608 GO:0048609 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051177 GO:0051276 GO:0051321 GO:0051716 GO:0060771 GO:0060772 GO:0061458 GO:0061983 GO:0070192 GO:0071704 GO:0071840 GO:0080186 GO:0090304 GO:0090567 GO:0098813 GO:0099402 GO:0140013 GO:0140014 GO:1901360 GO:1903046 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_13 zf-C2H2_3

Protein Analysis

317

Amino Acids

34.99

Weight (kDa)

9.03

Isoelectric Point (pI)

48.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_3	PF13878	100 - 138	9.8e-15	zinc-finger of acetyl-transferase ESCO
Acetyltransf_13	PF13880	288 - 317	6.4e-10	ESCO1/2 acetyl-transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003898)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31400 AT4G31400
fragaria_vesca	FvH4_6g20270
malus_domestica	MD10G1054000.v1.1 MD12G1039800.v1.1 MD14G1038400.v1.1
prunus_persica	Prupe.7G095100_v2.0.a1
pyrus_communis	pycom01g00980 pycom12g03380
rosa_chinensis	RchiOBHm_Chr1g0331051 RchiOBHm_Chr3g0475861
rosa_laevigata	RLG00000001160 RLG00000023805 RLG00000029757
rosa_multiflora	Rmu_sc0000539.1_g000091 Rmu_sc0000539.1_g000092 Rmu_sc0002515.1_g000002
rosa_roxburghii	Rroxscaffold_3G00226030 Rroxscaffold_4G00319510 Rroxscaffold_6G00405780
rosa_rugosa	Rorug01G0093800 Rorug03G0151800 Rorug07G0290800
rosa_samantha	Rh1AG113600 Rh1CG110400 Rh1DG119200 Rh3AG201800 Rh3BG232300 Rh3CG226900 Rh3DG227400 Rh7BG417600 Rh7CG466100
rosa_wichuraiana	Rw1G009260 Rw3G018370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	173, 937
AccI	GTMKAC	1 cut(s)	228
AccII	CGCG	1 cut(s)	426
AciI	CCGC	5 cut(s)	348, 424, 426, 627, 867
AclWI	GGATC	1 cut(s)	509
AcoI	YGGCCR	1 cut(s)	91
AcsI	RAATTY	1 cut(s)	770
AfaI	GTAC	3 cut(s)	302, 721, 864
AfiI	CCNNNNNNNGG	6 cut(s)	169, 170, 173, 354, 760, 937
AgsI	TTSAA	3 cut(s)	28, 439, 820
AjnI	CCWGG	1 cut(s)	93
AluBI	AGCT	5 cut(s)	155, 291, 571, 705, 905
AluI	AGCT	5 cut(s)	155, 291, 571, 705, 905
Alw21I	GWGCWC	1 cut(s)	157
Alw26I	GTCTC	1 cut(s)	557
AlwI	GGATC	1 cut(s)	509
AoxI	GGCC	1 cut(s)	91
ApoI	RAATTY	1 cut(s)	770
ArsI	GACNNNNNNTTYG	2 cut(s)	202, 234
AsuHPI	GGTGA	1 cut(s)	524
AxyI	CCTNAGG	1 cut(s)	947
BanII	GRGCYC	1 cut(s)	157
Bbv12I	GWGCWC	1 cut(s)	157
BccI	CCATC	3 cut(s)	503, 553, 692
BceAI	ACGGC	2 cut(s)	106, 738
BciT130I	CCWGG	1 cut(s)	95
BcoDI	GTCTC	1 cut(s)	557
BfaI	CTAG	2 cut(s)	708, 717
Bme1390I	CCNGG	1 cut(s)	95
BmrFI	CCNGG	1 cut(s)	95
BmsI	GCATC	1 cut(s)	931
BoxI	GACNNNNGTC	1 cut(s)	315
BpmI	CTGGAG	3 cut(s)	393, 737, 885
BsaBI	GATNNNNATC	1 cut(s)	513
BsaJI	CCNNGG	2 cut(s)	167, 424
BsaXI	ACNNNNNCTCC	2 cut(s)	169, 199
Bsc4I	CCNNNNNNNGG	6 cut(s)	169, 170, 173, 354, 760, 937
Bse1I	ACTGG	4 cut(s)	199, 376, 754, 838
Bse21I	CCTNAGG	1 cut(s)	947
Bse3DI	GCAATG	1 cut(s)	457
Bse8I	GATNNNNATC	1 cut(s)	513
BseBI	CCWGG	1 cut(s)	95
BseDI	CCNNGG	2 cut(s)	167, 424
BseGI	GGATG	4 cut(s)	229, 391, 514, 946
BseJI	GATNNNNATC	1 cut(s)	513
BseLI	CCNNNNNNNGG	6 cut(s)	169, 170, 173, 354, 760, 937
BseMI	GCAATG	1 cut(s)	457
BseMII	CTCAG	4 cut(s)	311, 539, 558, 938
BseNI	ACTGG	4 cut(s)	199, 376, 754, 838
BseRI	GAGGAG	2 cut(s)	60, 498
BsgI	GTGCAG	2 cut(s)	320, 711
Bsh1236I	CGCG	1 cut(s)	426
BshFI	GGCC	1 cut(s)	93
BsiHKAI	GWGCWC	1 cut(s)	157
BslI	CCNNNNNNNGG	6 cut(s)	169, 170, 173, 354, 760, 937
BsmAI	GTCTC	1 cut(s)	557
BsnI	GGCC	1 cut(s)	93
Bsp1286I	GDGCHC	1 cut(s)	157
Bsp143I	GATC	2 cut(s)	12, 514
BspACI	CCGC	5 cut(s)	348, 424, 426, 627, 867
BspANI	GGCC	1 cut(s)	93
BspCNI	CTCAG	4 cut(s)	310, 538, 559, 939
BspFNI	CGCG	1 cut(s)	426
BspPI	GGATC	1 cut(s)	509
BspQI	GCTCTTC	1 cut(s)	145
BsrDI	GCAATG	1 cut(s)	457
BsrI	ACTGG	4 cut(s)	199, 376, 754, 838
BssECI	CCNNGG	2 cut(s)	167, 424
BssMI	GATC	2 cut(s)	12, 514
BssT1I	CCWWGG	1 cut(s)	167
Bst2UI	CCWGG	1 cut(s)	95
Bst4CI	ACNGT	2 cut(s)	253, 268
Bst6I	CTCTTC	4 cut(s)	40, 145, 278, 375
BstDEI	CTNAG	4 cut(s)	297, 525, 567, 947
BstDSI	CCRYGG	1 cut(s)	424
BstF5I	GGATG	4 cut(s)	229, 391, 514, 946
BstFNI	CGCG	1 cut(s)	426
BstKTI	GATC	2 cut(s)	15, 517
BstMAI	GTCTC	1 cut(s)	557
BstMBI	GATC	2 cut(s)	12, 514
BstMWI	GCNNNNNNNGC	4 cut(s)	127, 722, 803, 866
BstNI	CCWGG	1 cut(s)	95
BstNSI	RCATGY	1 cut(s)	354
BstPAI	GACNNNNGTC	1 cut(s)	315
BstSCI	CCNGG	1 cut(s)	93
BstUI	CGCG	1 cut(s)	426
Bsu36I	CCTNAGG	1 cut(s)	947
BsuRI	GGCC	1 cut(s)	93
BtgI	CCRYGG	1 cut(s)	424
BtsCI	GGATG	4 cut(s)	229, 391, 514, 946
BtsI	GCAGTG	1 cut(s)	583
BtsIMutI	CAGTG	4 cut(s)	22, 273, 583, 831
Cfr42I	CCGCGG	1 cut(s)	427
Csp6I	GTAC	3 cut(s)	301, 720, 863
CviAII	CATG	2 cut(s)	351, 361
CviQI	GTAC	3 cut(s)	301, 720, 863
DdeI	CTNAG	4 cut(s)	297, 525, 567, 947
DpnI	GATC	2 cut(s)	14, 516
DpnII	GATC	2 cut(s)	12, 514
EaeI	YGGCCR	1 cut(s)	91
Eam1104I	CTCTTC	4 cut(s)	40, 145, 278, 375
EarI	CTCTTC	4 cut(s)	40, 145, 278, 375
Ecl136II	GAGCTC	1 cut(s)	155
Eco130I	CCWWGG	1 cut(s)	167
Eco24I	GRGCYC	1 cut(s)	157
Eco53kI	GAGCTC	1 cut(s)	155
Eco81I	CCTNAGG	1 cut(s)	947
EcoICRI	GAGCTC	1 cut(s)	155
EcoRII	CCWGG	1 cut(s)	93
EcoT14I	CCWWGG	1 cut(s)	167
EcoT38I	GRGCYC	1 cut(s)	157
ErhI	CCWWGG	1 cut(s)	167
FaeI	CATG	2 cut(s)	354, 364
FaiI	YATR	9 cut(s)	107, 109, 294, 352, 362, 366, 420, 662, 923
FatI	CATG	2 cut(s)	350, 360
FauI	CCCGC	2 cut(s)	431, 874
FauNDI	CATATG	1 cut(s)	107
FblI	GTMKAC	1 cut(s)	228
FokI	GGATG	3 cut(s)	236, 398, 521
FriOI	GRGCYC	1 cut(s)	157
FspBI	CTAG	2 cut(s)	708, 717
GsuI	CTGGAG	3 cut(s)	393, 737, 885
HaeIII	GGCC	1 cut(s)	93
Hin1II	CATG	2 cut(s)	354, 364
HincII	GTYRAC	2 cut(s)	229, 744
HindII	GTYRAC	2 cut(s)	229, 744
HinfI	GANTC	4 cut(s)	230, 245, 493, 586
HpaI	GTTAAC	1 cut(s)	744
HphI	GGTGA	1 cut(s)	524
Hpy166II	GTNNAC	2 cut(s)	229, 744
Hpy188I	TCNGA	4 cut(s)	223, 325, 492, 528
Hpy188III	TCNNGA	1 cut(s)	809
Hpy8I	GTNNAC	2 cut(s)	229, 744
Hpy99I	CGWCG	3 cut(s)	86, 89, 92
HpyAV	CCTTC	3 cut(s)	31, 385, 810
HpyCH4III	ACNGT	2 cut(s)	253, 268
HpyCH4V	TGCA	4 cut(s)	4, 337, 450, 692
HpyF10VI	GCNNNNNNNGC	4 cut(s)	127, 722, 803, 866
HpyF3I	CTNAG	4 cut(s)	297, 525, 567, 947
Hsp92II	CATG	2 cut(s)	354, 364
KspAI	GTTAAC	1 cut(s)	744
KspI	CCGCGG	1 cut(s)	427
Kzo9I	GATC	2 cut(s)	12, 514
LguI	GCTCTTC	1 cut(s)	145
LmnI	GCTCC	2 cut(s)	160, 811
LweI	GCATC	1 cut(s)	931
MaeI	CTAG	2 cut(s)	708, 717
MaeIII	GTNAC	4 cut(s)	268, 367, 550, 895
MalI	GATC	2 cut(s)	14, 516
MboI	GATC	2 cut(s)	12, 514
MboII	GAAGA	9 cut(s)	16, 27, 30, 33, 162, 295, 323, 392, 924
MhlI	GDGCHC	1 cut(s)	157
MluCI	AATT	5 cut(s)	98, 131, 434, 633, 770
MlyI	GAGTC	1 cut(s)	224
MmeI	TCCRAC	3 cut(s)	460, 470, 486
MseI	TTAA	3 cut(s)	474, 603, 743
MslI	CAYNNNNRTG	1 cut(s)	365
MspA1I	CMGCKG	2 cut(s)	426, 869
MspR9I	CCNGG	1 cut(s)	95
MvaI	CCWGG	1 cut(s)	95
MvnI	CGCG	1 cut(s)	426
MwoI	GCNNNNNNNGC	4 cut(s)	127, 722, 803, 866
NdeI	CATATG	1 cut(s)	107
NdeII	GATC	2 cut(s)	12, 514
NlaIII	CATG	2 cut(s)	354, 364
NmuCI	GTSAC	4 cut(s)	268, 367, 550, 895
NspI	RCATGY	1 cut(s)	354
PciSI	GCTCTTC	1 cut(s)	145
PfeI	GAWTC	3 cut(s)	245, 493, 586
PflMI	CCANNNNNTGG	2 cut(s)	173, 937
PleI	GAGTC	1 cut(s)	224
PpsI	GAGTC	1 cut(s)	224
PshAI	GACNNNNGTC	1 cut(s)	315
Psp124BI	GAGCTC	1 cut(s)	157
Psp6I	CCWGG	1 cut(s)	93
PspGI	CCWGG	1 cut(s)	93
RsaI	GTAC	3 cut(s)	302, 721, 864
RsaNI	GTAC	3 cut(s)	301, 720, 863
RseI	CAYNNNNRTG	1 cut(s)	365
SacI	GAGCTC	1 cut(s)	157
SacII	CCGCGG	1 cut(s)	427
SalI	GTCGAC	1 cut(s)	227
SapI	GCTCTTC	1 cut(s)	145
SaqAI	TTAA	3 cut(s)	474, 603, 743
Sau3AI	GATC	2 cut(s)	12, 514
SchI	GAGTC	1 cut(s)	224
ScrFI	CCNGG	1 cut(s)	95
SduI	GDGCHC	1 cut(s)	157
SfaNI	GCATC	1 cut(s)	931
Sfr303I	CCGCGG	1 cut(s)	427
SgrBI	CCGCGG	1 cut(s)	427
SmiMI	CAYNNNNRTG	1 cut(s)	365
Sse9I	AATT	5 cut(s)	98, 131, 434, 633, 770
SsiI	CCGC	5 cut(s)	348, 424, 426, 627, 867
SspMI	CTAG	2 cut(s)	708, 717
SstI	GAGCTC	1 cut(s)	157
StyD4I	CCNGG	1 cut(s)	93
StyI	CCWWGG	1 cut(s)	167
TaaI	ACNGT	2 cut(s)	253, 268
TaqI	TCGA	4 cut(s)	81, 228, 248, 696
TasI	AATT	5 cut(s)	98, 131, 434, 633, 770
TfiI	GAWTC	3 cut(s)	245, 493, 586
Tru1I	TTAA	3 cut(s)	474, 603, 743
Tru9I	TTAA	3 cut(s)	474, 603, 743
TscAI	CASTG	4 cut(s)	22, 273, 583, 838
TseFI	GTSAC	4 cut(s)	268, 367, 550, 895
Tsp45I	GTSAC	4 cut(s)	268, 367, 550, 895
TspDTI	ATGAA	2 cut(s)	393, 455
TspRI	CASTG	4 cut(s)	22, 273, 583, 838
Van91I	CCANNNNNTGG	2 cut(s)	173, 937
XapI	RAATTY	1 cut(s)	770
XceI	RCATGY	1 cut(s)	354
XcmI	CCANNNNNNNNNTGG	1 cut(s)	934
XmiI	GTMKAC	1 cut(s)	228
XspI	CTAG	2 cut(s)	708, 717

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.