Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0003898

Physical Location & Seq

Genomic Coordinates Reverse (-)

4311316 .. 4313698

Gene Structure 2383 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1039800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGCAATCAAAGATCAGTGCCTTCTTCAAACCCTCCTCTTCTTCTTCCCCTTGCCCCAACCCAGCAGCCGCACCTCCGCTTCTTTCCAACGAAAACGACGACGAAATGACCGTCTGGGAGAATACGCAGCACCAGTACTGTAACACCTACAAGCGAAGAGCTCCAAACCCGCAAAGAGGAAGGGACAAAAATCCAGTGAACCAATTGCCGGAGAAACCCTTTTCTGATGGTAATTCCAGGAAGCCGGAATCGACCACATTGGGAAGAATAGTGACCAAGAACAAGAAGAGAAGCTATGCTCAGTTCTATCTGGACTTTGGACAGTCTGATTTCAATCTGCACACGTGCTCCACGTGCGGGGTCAAGTATACCGCCGGAGACGAAGACGATGAGAAGGCTCACAGGGCATTTCACAAGGACCATACCAATGGAATTCCATTCAAGGGATGGTGCAATGAGAGGGTTGTTCATTTGCCTTCTGTGGAAGGAGGTCGGATTGTTTTGGTGTTAGATTCTGATCCTCCGGCTCAGAGAAACAAGGTTGGGGAAGTTGTGAAGAGAATGGAGAGTGAGCTTGGAAATGGATGGATTTTGCACAAGTTGTGTAAGGTATATCTGTTCATTTTGTCCCAAAGGGTTGCAGGCTGTCTAGTTGCGGAACCAATAAAAGAAGCACACAAAGTTTCTTCATTTGCAGTTGATGGAAGTTCCGGTGGTACAAATACACATGAAGCAAAATTATCTACTCTCCAATTTGGGGATATCAGGTTTCAGAGGGAAGTCATGAGAAAAGCCCCTTCTGTTCCCGAAGCATTGAATGAGAATCTCAACGGTGCTATCTTCTGCGACAGGGAAGCAGTGGCTGCTGTTTGTGGCGTTAGAGCCATTTGGGTCACTCCATCTAACAGAAGAAAACACATAGCCACCCAGTTATTAGATGCCCTGAGGAAAAGTTTCTGCATGGGATTTGTCCTCGAACGCTCTCAACTGGCATTCTCTCAACCAACATCAACTGGAAAGGCATTGGCATCCAATTATACTGGTGGTGGTGGATATTTTCTGGTGTACAAAACCAACCATATTGTCCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000070 GO:0000278 GO:0000280 GO:0000724 GO:0000725 GO:0000819 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0007135 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009553 GO:0009790 GO:0009791 GO:0009793 GO:0009908 GO:0009956 GO:0009987 GO:0010154 GO:0016043 GO:0016407 GO:0016740 GO:0016746 GO:0016747 GO:0022402 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0034085 GO:0034089 GO:0034641 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0045132 GO:0045144 GO:0046483 GO:0048229 GO:0048285 GO:0048316 GO:0048364 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048589 GO:0048608 GO:0048609 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051177 GO:0051276 GO:0051321 GO:0051716 GO:0060771 GO:0060772 GO:0061458 GO:0061983 GO:0070192 GO:0071704 GO:0071840 GO:0080186 GO:0090304 GO:0090567 GO:0098813 GO:0099402 GO:0140013 GO:0140014 GO:1901360 GO:1903046 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_13 zf-C2H2_3

Protein Analysis

364

Amino Acids

40.25

Weight (kDa)

9.14

Isoelectric Point (pI)

41.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_3	PF13878	101 - 139	7e-16	zinc-finger of acetyl-transferase ESCO
Acetyltransf_13	PF13880	288 - 356	6.7e-28	ESCO1/2 acetyl-transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003898)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31400 AT4G31400
fragaria_vesca	FvH4_6g20270
malus_domestica	MD10G1054000.v1.1 MD12G1039800.v1.1 MD14G1038400.v1.1
prunus_persica	Prupe.7G095100_v2.0.a1
pyrus_communis	pycom01g00980 pycom12g03380
rosa_chinensis	RchiOBHm_Chr1g0331051 RchiOBHm_Chr3g0475861
rosa_laevigata	RLG00000001160 RLG00000023805 RLG00000029757
rosa_multiflora	Rmu_sc0000539.1_g000091 Rmu_sc0000539.1_g000092 Rmu_sc0002515.1_g000002
rosa_roxburghii	Rroxscaffold_3G00226030 Rroxscaffold_4G00319510 Rroxscaffold_6G00405780
rosa_rugosa	Rorug01G0093800 Rorug03G0151800 Rorug07G0290800
rosa_samantha	Rh1AG113600 Rh1CG110400 Rh1DG119200 Rh3AG201800 Rh3BG232300 Rh3CG226900 Rh3DG227400 Rh7BG417600 Rh7CG466100
rosa_wichuraiana	Rw1G009260 Rw3G018370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	368
AciI	CCGC	6 cut(s)	69, 77, 170, 357, 372, 656
AclWI	GGATC	1 cut(s)	512
AcsI	RAATTY	1 cut(s)	432
AcvI	CACGTG	2 cut(s)	345, 354
AfaI	GTAC	3 cut(s)	137, 718, 1067
AfiI	CCNNNNNNNGG	5 cut(s)	176, 208, 357, 443, 757
AflIII	ACRYGT	1 cut(s)	342
AgsI	TTSAA	4 cut(s)	28, 334, 442, 817
AjnI	CCWGG	1 cut(s)	236
AluBI	AGCT	3 cut(s)	161, 294, 574
AluI	AGCT	3 cut(s)	161, 294, 574
Alw21I	GWGCWC	2 cut(s)	163, 350
Alw26I	GTCTC	1 cut(s)	372
AlwI	GGATC	1 cut(s)	512
AlwNI	CAGNNNCTG	1 cut(s)	863
ApeKI	GCWGC	3 cut(s)	65, 127, 863
ApoI	RAATTY	1 cut(s)	432
ArsI	GACNNNNNNTTYG	2 cut(s)	96, 128
Asp700I	GAANNNNTTC	1 cut(s)	953
AspS9I	GGNCC	1 cut(s)	418
AvaII	GGWCC	1 cut(s)	418
AxyI	CCTNAGG	1 cut(s)	944
BanII	GRGCYC	1 cut(s)	163
BbrPI	CACGTG	2 cut(s)	345, 354
BbsI	GAAGAC	1 cut(s)	390
Bbv12I	GWGCWC	2 cut(s)	163, 350
BbvI	GCAGC	3 cut(s)	77, 139, 850
BccI	CCATC	5 cut(s)	221, 441, 579, 695, 907
BciT130I	CCWGG	1 cut(s)	238
BcoDI	GTCTC	1 cut(s)	372
BfaI	CTAG	1 cut(s)	650
BisI	GCNGC	4 cut(s)	66, 69, 128, 864
BlsI	GCNGC	4 cut(s)	67, 70, 129, 865
BmcAI	AGTACT	1 cut(s)	137
Bme1390I	CCNGG	1 cut(s)	238
Bme18I	GGWCC	1 cut(s)	418
BmgT120I	GGNCC	1 cut(s)	418
BmiI	GGNNCC	1 cut(s)	660
BmrFI	CCNGG	1 cut(s)	238
BmrI	ACTGGG	1 cut(s)	922
BmsI	GCATC	2 cut(s)	928, 1037
BmuI	ACTGGG	1 cut(s)	922
BpiI	GAAGAC	1 cut(s)	390
BsaAI	YACGTR	2 cut(s)	345, 354
BsaBI	GATNNNNATC	2 cut(s)	333, 516
BsaWI	WCCGGW	1 cut(s)	710
BsaXI	ACNNNNNCTCC	2 cut(s)	332, 362
Bsc4I	CCNNNNNNNGG	5 cut(s)	176, 208, 357, 443, 757
Bse1I	ACTGG	6 cut(s)	133, 194, 928, 993, 1018, 1045
Bse21I	CCTNAGG	1 cut(s)	944
Bse3DI	GCAATG	1 cut(s)	460
Bse8I	GATNNNNATC	2 cut(s)	333, 516
BseBI	CCWGG	1 cut(s)	238
BseGI	GGATG	3 cut(s)	452, 590, 1028
BseJI	GATNNNNATC	2 cut(s)	333, 516
BseLI	CCNNNNNNNGG	5 cut(s)	176, 208, 357, 443, 757
BseMI	GCAATG	1 cut(s)	460
BseMII	CTCAG	3 cut(s)	314, 542, 935
BseNI	ACTGG	6 cut(s)	133, 194, 928, 993, 1018, 1045
BseRI	GAGGAG	1 cut(s)	25
BseXI	GCAGC	3 cut(s)	77, 139, 850
BseYI	CCCAGC	1 cut(s)	61
BsgI	GTGCAG	1 cut(s)	323
BsiHKAI	GWGCWC	2 cut(s)	163, 350
BsiSI	CCGG	5 cut(s)	209, 245, 375, 524, 711
BslFI	GGGAC	3 cut(s)	197, 613, 1070
BslI	CCNNNNNNNGG	5 cut(s)	176, 208, 357, 443, 757
BsmAI	GTCTC	1 cut(s)	372
BsmBI	CGTCTC	1 cut(s)	372
BsmFI	GGGAC	3 cut(s)	197, 613, 1070
BsmI	GAATGC	1 cut(s)	992
Bsp1286I	GDGCHC	2 cut(s)	163, 350
Bsp1407I	TGTACA	1 cut(s)	1065
Bsp143I	GATC	2 cut(s)	12, 517
BspACI	CCGC	6 cut(s)	69, 77, 170, 357, 372, 656
BspCNI	CTCAG	3 cut(s)	313, 541, 936
BspHI	TCATGA	1 cut(s)	783
BspLI	GGNNCC	1 cut(s)	660
BspPI	GGATC	1 cut(s)	512
BspQI	GCTCTTC	1 cut(s)	151
BsrDI	GCAATG	1 cut(s)	460
BsrGI	TGTACA	1 cut(s)	1065
BsrI	ACTGG	6 cut(s)	133, 194, 928, 993, 1018, 1045
BssMI	GATC	2 cut(s)	12, 517
BssNAI	GTATAC	1 cut(s)	369
Bst1107I	GTATAC	1 cut(s)	369
Bst2UI	CCWGG	1 cut(s)	238
Bst4CI	ACNGT	4 cut(s)	112, 140, 324, 833
Bst6I	CTCTTC	4 cut(s)	43, 151, 281, 551
BstAPI	GCANNNNNTGC	1 cut(s)	863
BstAUI	TGTACA	1 cut(s)	1065
BstBAI	YACGTR	2 cut(s)	345, 354
BstC8I	GCNNGC	1 cut(s)	643
BstDEI	CTNAG	3 cut(s)	300, 528, 944
BstF5I	GGATG	3 cut(s)	452, 590, 1028
BstKTI	GATC	2 cut(s)	15, 520
BstMAI	GTCTC	1 cut(s)	372
BstMBI	GATC	2 cut(s)	12, 517
BstMWI	GCNNNNNNNGC	3 cut(s)	354, 404, 863
BstNI	CCWGG	1 cut(s)	238
BstSCI	CCNGG	1 cut(s)	236
BstV1I	GCAGC	3 cut(s)	77, 139, 850
BstV2I	GAAGAC	1 cut(s)	390
BstXI	CCANNNNNNTGG	1 cut(s)	428
BstZ17I	GTATAC	1 cut(s)	369
Bsu36I	CCTNAGG	1 cut(s)	944
BtsCI	GGATG	3 cut(s)	452, 590, 1028
BtsI	GCAGTG	1 cut(s)	864
BtsIMutI	CAGTG	3 cut(s)	22, 201, 864
Cac8I	GCNNGC	1 cut(s)	643
CaiI	CAGNNNCTG	1 cut(s)	863
CciI	TCATGA	1 cut(s)	783
Cfr13I	GGNCC	1 cut(s)	418
Csp6I	GTAC	3 cut(s)	136, 717, 1066
CviAII	CATG	3 cut(s)	728, 784, 961
CviQI	GTAC	3 cut(s)	136, 717, 1066
DdeI	CTNAG	3 cut(s)	300, 528, 944
DpnI	GATC	2 cut(s)	14, 519
DpnII	GATC	2 cut(s)	12, 517
Eam1104I	CTCTTC	4 cut(s)	43, 151, 281, 551
EarI	CTCTTC	4 cut(s)	43, 151, 281, 551
Ecl136II	GAGCTC	1 cut(s)	161
Eco24I	GRGCYC	1 cut(s)	163
Eco32I	GATATC	1 cut(s)	763
Eco47I	GGWCC	1 cut(s)	418
Eco53kI	GAGCTC	1 cut(s)	161
Eco72I	CACGTG	2 cut(s)	345, 354
Eco81I	CCTNAGG	1 cut(s)	944
EcoICRI	GAGCTC	1 cut(s)	161
EcoRI	GAATTC	1 cut(s)	432
EcoRII	CCWGG	1 cut(s)	236
EcoRV	GATATC	1 cut(s)	763
EcoT38I	GRGCYC	1 cut(s)	163
Esp3I	CGTCTC	1 cut(s)	372
FaeI	CATG	3 cut(s)	731, 787, 964
FaqI	GGGAC	3 cut(s)	197, 613, 1070
FatI	CATG	3 cut(s)	727, 783, 960
FauI	CCCGC	2 cut(s)	177, 350
FblI	GTMKAC	1 cut(s)	368
Fnu4HI	GCNGC	4 cut(s)	66, 69, 128, 864
FokI	GGATG	3 cut(s)	459, 597, 1015
FriOI	GRGCYC	1 cut(s)	163
Fsp4HI	GCNGC	4 cut(s)	66, 69, 128, 864
FspBI	CTAG	1 cut(s)	650
GluI	GCNGC	4 cut(s)	66, 69, 128, 864
GsaI	CCCAGC	1 cut(s)	65
HapII	CCGG	5 cut(s)	209, 245, 375, 524, 711
Hin1II	CATG	3 cut(s)	731, 787, 964
HinfI	GANTC	3 cut(s)	248, 512, 823
HpaII	CCGG	5 cut(s)	209, 245, 375, 524, 711
Hpy166II	GTNNAC	3 cut(s)	199, 369, 1066
Hpy188I	TCNGA	6 cut(s)	226, 328, 495, 517, 531, 774
Hpy188III	TCNNGA	3 cut(s)	311, 784, 806
Hpy8I	GTNNAC	3 cut(s)	199, 369, 1066
Hpy99I	CGWCG	2 cut(s)	101, 104
HpyAV	CCTTC	6 cut(s)	31, 174, 388, 479, 486, 807
HpyCH4III	ACNGT	4 cut(s)	112, 140, 324, 833
HpyCH4IV	ACGT	2 cut(s)	344, 353
HpyCH4V	TGCA	7 cut(s)	4, 340, 453, 595, 641, 695, 960
HpyF10VI	GCNNNNNNNGC	3 cut(s)	354, 404, 863
HpyF3I	CTNAG	3 cut(s)	300, 528, 944
HpySE526I	ACGT	2 cut(s)	344, 353
Hsp92II	CATG	3 cut(s)	731, 787, 964
Kzo9I	GATC	2 cut(s)	12, 517
LguI	GCTCTTC	1 cut(s)	151
LmnI	GCTCC	2 cut(s)	166, 353
Lsp1109I	GCAGC	3 cut(s)	77, 139, 850
LweI	GCATC	2 cut(s)	928, 1037
MaeI	CTAG	1 cut(s)	650
MaeII	ACGT	2 cut(s)	344, 353
MaeIII	GTNAC	3 cut(s)	140, 271, 892
MalI	GATC	2 cut(s)	14, 519
MboI	GATC	2 cut(s)	12, 517
MfeI	CAATTG	1 cut(s)	203
MhlI	GDGCHC	2 cut(s)	163, 350
MluCI	AATT	6 cut(s)	203, 232, 432, 737, 752, 1033
MmeI	TCCRAC	2 cut(s)	111, 473
MroXI	GAANNNNTTC	1 cut(s)	953
MslI	CAYNNNNRTG	1 cut(s)	426
MspI	CCGG	5 cut(s)	209, 245, 375, 524, 711
MspR9I	CCNGG	1 cut(s)	238
MunI	CAATTG	1 cut(s)	203
Mva1269I	GAATGC	1 cut(s)	992
MvaI	CCWGG	1 cut(s)	238
MwoI	GCNNNNNNNGC	3 cut(s)	354, 404, 863
NdeII	GATC	2 cut(s)	12, 517
NlaIII	CATG	3 cut(s)	731, 787, 964
NlaIV	GGNNCC	1 cut(s)	660
NmuCI	GTSAC	2 cut(s)	271, 892
PagI	TCATGA	1 cut(s)	783
PciSI	GCTCTTC	1 cut(s)	151
PcsI	WCGNNNNNNNCGW	3 cut(s)	96, 108, 350
PctI	GAATGC	1 cut(s)	992
PdmI	GAANNNNTTC	1 cut(s)	953
PfeI	GAWTC	3 cut(s)	248, 512, 823
PfoI	TCCNGGA	1 cut(s)	236
PkrI	GCNGC	4 cut(s)	67, 70, 129, 865
PmaCI	CACGTG	2 cut(s)	345, 354
PmlI	CACGTG	2 cut(s)	345, 354
Ppu21I	YACGTR	2 cut(s)	345, 354
Psp124BI	GAGCTC	1 cut(s)	163
Psp6I	CCWGG	1 cut(s)	236
PspCI	CACGTG	2 cut(s)	345, 354
PspFI	CCCAGC	1 cut(s)	61
PspGI	CCWGG	1 cut(s)	236
PspN4I	GGNNCC	1 cut(s)	660
PspPI	GGNCC	1 cut(s)	418
PstNI	CAGNNNCTG	1 cut(s)	863
RsaI	GTAC	3 cut(s)	137, 718, 1067
RsaNI	GTAC	3 cut(s)	136, 717, 1066
RseI	CAYNNNNRTG	1 cut(s)	426
SacI	GAGCTC	1 cut(s)	163
SapI	GCTCTTC	1 cut(s)	151
SatI	GCNGC	4 cut(s)	66, 69, 128, 864
Sau3AI	GATC	2 cut(s)	12, 517
Sau96I	GGNCC	1 cut(s)	418
ScaI	AGTACT	1 cut(s)	137
ScrFI	CCNGG	1 cut(s)	238
SduI	GDGCHC	2 cut(s)	163, 350
SfaNI	GCATC	2 cut(s)	928, 1037
SinI	GGWCC	1 cut(s)	418
SmiMI	CAYNNNNRTG	1 cut(s)	426
Sse9I	AATT	6 cut(s)	203, 232, 432, 737, 752, 1033
SsiI	CCGC	6 cut(s)	69, 77, 170, 357, 372, 656
SspMI	CTAG	1 cut(s)	650
SstI	GAGCTC	1 cut(s)	163
StyD4I	CCNGG	1 cut(s)	236
TaaI	ACNGT	4 cut(s)	112, 140, 324, 833
TaiI	ACGT	2 cut(s)	347, 356
TaqI	TCGA	2 cut(s)	251, 975
TasI	AATT	6 cut(s)	203, 232, 432, 737, 752, 1033
TatI	WGTACW	2 cut(s)	135, 1065
TauI	GCSGC	1 cut(s)	71
TfiI	GAWTC	3 cut(s)	248, 512, 823
TscAI	CASTG	3 cut(s)	22, 201, 864
TseFI	GTSAC	2 cut(s)	271, 892
TseI	GCWGC	3 cut(s)	65, 127, 863
Tsp45I	GTSAC	2 cut(s)	271, 892
TspDTI	ATGAA	4 cut(s)	458, 610, 678, 744
TspRI	CASTG	3 cut(s)	22, 201, 864
VpaK11BI	GGWCC	1 cut(s)	418
XapI	RAATTY	1 cut(s)	432
XcmI	CCANNNNNNNNNTGG	1 cut(s)	444
XmiI	GTMKAC	1 cut(s)	368
XmnI	GAANNNNTTC	1 cut(s)	953
XspI	CTAG	1 cut(s)	650
ZrmI	AGTACT	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.