Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0003898

Physical Location & Seq

Genomic Coordinates Forward (+)

7341284 .. 7343124

Gene Structure 1841 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1054000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGCAATCAAAGATCAGTGCCTTCTTCAAACCCTCCTCCTCTTCTTCTTCCTCTTCACCCAACCCAGCAGCCGCACCTCCGCTTCTTTCCAACGAAAACGACGACGAATTGACCGTCTGGGAGAATACGCAGCACCAGTACTGTAACACCTACAAGCGAAGAGCTCCAAACCCGCAAAGTAGTGGAAGGGACAAAAATCCAGTGAACCAATTGCCGGAGAAACCCTTTTCTGATTGTAATTCCGGGAAGCCGGAATCGACCACATTGGGAAGAACAGTGATCAAGAACAAGAAGAGAAGCTATTCTCAGTTCTATCTGGACTATGGACTGTCTGATTTCAATCTGCACACGTGCTCCACTTGCGGGGATAAGTATACCGCCGGAGACGAAGACGATGAGAAGGCTCACAGGATGCTCACAGGGCATTTCACAAGGACTATACCAATGGAATTCCATTCAAGGGATGGTGCAATGAGAGGGTTGTTCATTTGCCTTCTGTGGAAGGAGGTCGGATTGTTTTGGTCTGGCCGACGAAGAGGTGGTTCTGCTGCTGCCGTTGAGAAAAAAAGGTGGCCGAGGTTCAGGAGCTGGTGCCAAGAGAAAGAGATGAATGGGATGGAAGAAGAGATGGAACTTTTCCTTGCTGTGCTGTTGGCACGTTTTATAAGCGAACGTAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000070 GO:0000278 GO:0000280 GO:0000724 GO:0000725 GO:0000819 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0007135 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009553 GO:0009790 GO:0009791 GO:0009793 GO:0009908 GO:0009956 GO:0009987 GO:0010154 GO:0016043 GO:0016407 GO:0016740 GO:0016746 GO:0016747 GO:0022402 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0034085 GO:0034089 GO:0034641 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0045132 GO:0045144 GO:0046483 GO:0048229 GO:0048285 GO:0048316 GO:0048364 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048589 GO:0048608 GO:0048609 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051177 GO:0051276 GO:0051321 GO:0051716 GO:0060771 GO:0060772 GO:0061458 GO:0061983 GO:0070192 GO:0071704 GO:0071840 GO:0080186 GO:0090304 GO:0090567 GO:0098813 GO:0099402 GO:0140013 GO:0140014 GO:1901360 GO:1903046 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_13 zf-C2H2_3

Protein Analysis

227

Amino Acids

25.81

Weight (kDa)

8.86

Isoelectric Point (pI)

50.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_3	PF13878	103 - 137	9.6e-09	zinc-finger of acetyl-transferase ESCO

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003898)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31400 AT4G31400
fragaria_vesca	FvH4_6g20270
malus_domestica	MD10G1054000.v1.1 MD12G1039800.v1.1 MD14G1038400.v1.1
prunus_persica	Prupe.7G095100_v2.0.a1
pyrus_communis	pycom01g00980 pycom12g03380
rosa_chinensis	RchiOBHm_Chr1g0331051 RchiOBHm_Chr3g0475861
rosa_laevigata	RLG00000001160 RLG00000023805 RLG00000029757
rosa_multiflora	Rmu_sc0000539.1_g000091 Rmu_sc0000539.1_g000092 Rmu_sc0002515.1_g000002
rosa_roxburghii	Rroxscaffold_3G00226030 Rroxscaffold_4G00319510 Rroxscaffold_6G00405780
rosa_rugosa	Rorug01G0093800 Rorug03G0151800 Rorug07G0290800
rosa_samantha	Rh1AG113600 Rh1CG110400 Rh1DG119200 Rh3AG201800 Rh3BG232300 Rh3CG226900 Rh3DG227400 Rh7BG417600 Rh7CG466100
rosa_wichuraiana	Rw1G009260 Rw3G018370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	665
AccB1I	GGYRCC	1 cut(s)	591
AccI	GTMKAC	1 cut(s)	374
AciI	CCGC	5 cut(s)	72, 80, 173, 363, 378
AcoI	YGGCCR	2 cut(s)	526, 572
AcsI	RAATTY	1 cut(s)	449
AcvI	CACGTG	1 cut(s)	351
AfaI	GTAC	1 cut(s)	140
AfiI	CCNNNNNNNGG	3 cut(s)	214, 363, 460
AflIII	ACRYGT	1 cut(s)	348
AgsI	TTSAA	3 cut(s)	28, 340, 459
AluBI	AGCT	3 cut(s)	164, 300, 588
AluI	AGCT	3 cut(s)	164, 300, 588
Alw21I	GWGCWC	2 cut(s)	166, 356
Alw26I	GTCTC	1 cut(s)	378
AlwNI	CAGNNNCTG	1 cut(s)	588
AoxI	GGCC	2 cut(s)	526, 572
ApeKI	GCWGC	4 cut(s)	68, 130, 548, 551
ApoI	RAATTY	1 cut(s)	449
ArsI	GACNNNNNNTTYG	2 cut(s)	99, 131
Asp700I	GAANNNNTTC	1 cut(s)	301
AsuC2I	CCSGG	1 cut(s)	244
AsuHPI	GGTGA	1 cut(s)	48
BanI	GGYRCC	1 cut(s)	591
BanII	GRGCYC	1 cut(s)	166
BbrPI	CACGTG	1 cut(s)	351
BbsI	GAAGAC	1 cut(s)	396
Bbv12I	GWGCWC	2 cut(s)	166, 356
BbvI	GCAGC	4 cut(s)	80, 142, 535, 538
BccI	CCATC	3 cut(s)	458, 610, 622
BceAI	ACGGC	1 cut(s)	539
BclI	TGATCA	1 cut(s)	279
BcnI	CCSGG	1 cut(s)	244
BcoDI	GTCTC	1 cut(s)	378
BisI	GCNGC	5 cut(s)	69, 72, 131, 549, 552
BlsI	GCNGC	5 cut(s)	70, 73, 132, 550, 553
BmcAI	AGTACT	1 cut(s)	140
Bme1390I	CCNGG	1 cut(s)	244
BmiI	GGNNCC	1 cut(s)	593
BmrFI	CCNGG	1 cut(s)	244
BmsI	GCATC	1 cut(s)	402
BpiI	GAAGAC	1 cut(s)	396
BpuMI	CCSGG	1 cut(s)	244
BsaAI	YACGTR	1 cut(s)	351
BsaBI	GATNNNNATC	1 cut(s)	339
BsaJI	CCNNGG	1 cut(s)	575
BsaXI	ACNNNNNCTCC	2 cut(s)	338, 368
Bsc4I	CCNNNNNNNGG	3 cut(s)	214, 363, 460
Bse1I	ACTGG	2 cut(s)	136, 200
Bse3DI	GCAATG	1 cut(s)	477
Bse8I	GATNNNNATC	1 cut(s)	339
BseDI	CCNNGG	1 cut(s)	575
BseGI	GGATG	3 cut(s)	417, 469, 621
BseJI	GATNNNNATC	1 cut(s)	339
BseLI	CCNNNNNNNGG	3 cut(s)	214, 363, 460
BseMI	GCAATG	1 cut(s)	477
BseMII	CTCAG	1 cut(s)	320
BseNI	ACTGG	2 cut(s)	136, 200
BseRI	GAGGAG	2 cut(s)	25, 28
BseXI	GCAGC	4 cut(s)	80, 142, 535, 538
BseYI	CCCAGC	1 cut(s)	64
BsgI	GTGCAG	1 cut(s)	329
BshFI	GGCC	2 cut(s)	528, 574
BshNI	GGYRCC	1 cut(s)	591
BsiHKAI	GWGCWC	2 cut(s)	166, 356
BsiSI	CCGG	4 cut(s)	215, 243, 251, 381
BslFI	GGGAC	1 cut(s)	203
BslI	CCNNNNNNNGG	3 cut(s)	214, 363, 460
BsmAI	GTCTC	1 cut(s)	378
BsmBI	CGTCTC	1 cut(s)	378
BsmFI	GGGAC	1 cut(s)	203
BsnI	GGCC	2 cut(s)	528, 574
Bsp1286I	GDGCHC	2 cut(s)	166, 356
Bsp143I	GATC	2 cut(s)	12, 279
BspACI	CCGC	5 cut(s)	72, 80, 173, 363, 378
BspANI	GGCC	2 cut(s)	528, 574
BspCNI	CTCAG	1 cut(s)	319
BspLI	GGNNCC	1 cut(s)	593
BspQI	GCTCTTC	1 cut(s)	154
BspT107I	GGYRCC	1 cut(s)	591
BsrDI	GCAATG	1 cut(s)	477
BsrI	ACTGG	2 cut(s)	136, 200
BssECI	CCNNGG	1 cut(s)	575
BssMI	GATC	2 cut(s)	12, 279
BssNAI	GTATAC	1 cut(s)	375
Bst1107I	GTATAC	1 cut(s)	375
Bst4CI	ACNGT	4 cut(s)	115, 143, 277, 330
Bst6I	CTCTTC	6 cut(s)	46, 58, 154, 287, 529, 618
BstBAI	YACGTR	1 cut(s)	351
BstDEI	CTNAG	1 cut(s)	306
BstF5I	GGATG	3 cut(s)	417, 469, 621
BstKTI	GATC	2 cut(s)	15, 282
BstMAI	GTCTC	1 cut(s)	378
BstMBI	GATC	2 cut(s)	12, 279
BstMWI	GCNNNNNNNGC	2 cut(s)	360, 421
BstSCI	CCNGG	1 cut(s)	242
BstV1I	GCAGC	4 cut(s)	80, 142, 535, 538
BstV2I	GAAGAC	1 cut(s)	396
BstZ17I	GTATAC	1 cut(s)	375
BsuRI	GGCC	2 cut(s)	528, 574
BtsCI	GGATG	3 cut(s)	417, 469, 621
BtsIMutI	CAGTG	3 cut(s)	22, 207, 282
CaiI	CAGNNNCTG	1 cut(s)	588
Csp6I	GTAC	1 cut(s)	139
CviJI	RGCY	8 cut(s)	71, 164, 250, 300, 404, 528, 574, 588
CviKI_1	RGCY	8 cut(s)	71, 164, 250, 300, 404, 528, 574, 588
CviQI	GTAC	1 cut(s)	139
DdeI	CTNAG	1 cut(s)	306
DpnI	GATC	2 cut(s)	14, 281
DpnII	GATC	2 cut(s)	12, 279
EaeI	YGGCCR	2 cut(s)	526, 572
Eam1104I	CTCTTC	6 cut(s)	46, 58, 154, 287, 529, 618
EarI	CTCTTC	6 cut(s)	46, 58, 154, 287, 529, 618
Ecl136II	GAGCTC	1 cut(s)	164
Eco24I	GRGCYC	1 cut(s)	166
Eco53kI	GAGCTC	1 cut(s)	164
Eco72I	CACGTG	1 cut(s)	351
EcoICRI	GAGCTC	1 cut(s)	164
EcoRI	GAATTC	1 cut(s)	449
EcoT38I	GRGCYC	1 cut(s)	166
Esp3I	CGTCTC	1 cut(s)	378
FaiI	YATR	4 cut(s)	324, 375, 440, 665
FaqI	GGGAC	1 cut(s)	203
FauI	CCCGC	2 cut(s)	180, 356
FbaI	TGATCA	1 cut(s)	279
FblI	GTMKAC	1 cut(s)	374
Fnu4HI	GCNGC	5 cut(s)	69, 72, 131, 549, 552
FokI	GGATG	3 cut(s)	424, 476, 628
FriOI	GRGCYC	1 cut(s)	166
Fsp4HI	GCNGC	5 cut(s)	69, 72, 131, 549, 552
GluI	GCNGC	5 cut(s)	69, 72, 131, 549, 552
GsaI	CCCAGC	1 cut(s)	68
HaeIII	GGCC	2 cut(s)	528, 574
HapII	CCGG	4 cut(s)	215, 243, 251, 381
HinfI	GANTC	1 cut(s)	254
HpaII	CCGG	4 cut(s)	215, 243, 251, 381
HphI	GGTGA	1 cut(s)	48
Hpy166II	GTNNAC	2 cut(s)	205, 375
Hpy188I	TCNGA	3 cut(s)	232, 334, 512
Hpy188III	TCNNGA	3 cut(s)	283, 317, 583
Hpy8I	GTNNAC	2 cut(s)	205, 375
Hpy99I	CGWCG	3 cut(s)	104, 107, 534
HpyAV	CCTTC	5 cut(s)	31, 180, 394, 496, 503
HpyCH4III	ACNGT	4 cut(s)	115, 143, 277, 330
HpyCH4IV	ACGT	3 cut(s)	350, 658, 673
HpyCH4V	TGCA	3 cut(s)	4, 346, 470
HpyF10VI	GCNNNNNNNGC	2 cut(s)	360, 421
HpyF3I	CTNAG	1 cut(s)	306
HpySE526I	ACGT	3 cut(s)	350, 658, 673
Ksp22I	TGATCA	1 cut(s)	279
Kzo9I	GATC	2 cut(s)	12, 279
LguI	GCTCTTC	1 cut(s)	154
LmnI	GCTCC	3 cut(s)	169, 359, 585
Lsp1109I	GCAGC	4 cut(s)	80, 142, 535, 538
LweI	GCATC	1 cut(s)	402
MaeII	ACGT	3 cut(s)	350, 658, 673
MaeIII	GTNAC	1 cut(s)	143
MalI	GATC	2 cut(s)	14, 281
MboI	GATC	2 cut(s)	12, 279
MfeI	CAATTG	1 cut(s)	209
MhlI	GDGCHC	2 cut(s)	166, 356
MluCI	AATT	4 cut(s)	107, 209, 238, 449
MmeI	TCCRAC	2 cut(s)	114, 490
MnlI	CCTC	9 cut(s)	43, 46, 49, 61, 87, 470, 499, 530, 570
MroXI	GAANNNNTTC	1 cut(s)	301
MspI	CCGG	4 cut(s)	215, 243, 251, 381
MspR9I	CCNGG	1 cut(s)	244
MunI	CAATTG	1 cut(s)	209
MwoI	GCNNNNNNNGC	2 cut(s)	360, 421
NciI	CCSGG	1 cut(s)	244
NdeII	GATC	2 cut(s)	12, 279
NlaIV	GGNNCC	1 cut(s)	593
NmeAIII	GCCGAG	1 cut(s)	600
PciSI	GCTCTTC	1 cut(s)	154
PcsI	WCGNNNNNNNCGW	2 cut(s)	99, 111
PdmI	GAANNNNTTC	1 cut(s)	301
PfeI	GAWTC	1 cut(s)	254
PfoI	TCCNGGA	1 cut(s)	242
PkrI	GCNGC	5 cut(s)	70, 73, 132, 550, 553
PmaCI	CACGTG	1 cut(s)	351
PmlI	CACGTG	1 cut(s)	351
Ppu21I	YACGTR	1 cut(s)	351
PsiI	TTATAA	1 cut(s)	665
Psp124BI	GAGCTC	1 cut(s)	166
PspCI	CACGTG	1 cut(s)	351
PspFI	CCCAGC	1 cut(s)	64
PspN4I	GGNNCC	1 cut(s)	593
PstNI	CAGNNNCTG	1 cut(s)	588
RsaI	GTAC	1 cut(s)	140
RsaNI	GTAC	1 cut(s)	139
SacI	GAGCTC	1 cut(s)	166
SapI	GCTCTTC	1 cut(s)	154
SatI	GCNGC	5 cut(s)	69, 72, 131, 549, 552
Sau3AI	GATC	2 cut(s)	12, 279
ScaI	AGTACT	1 cut(s)	140
ScrFI	CCNGG	1 cut(s)	244
SduI	GDGCHC	2 cut(s)	166, 356
SfaNI	GCATC	1 cut(s)	402
Sse9I	AATT	4 cut(s)	107, 209, 238, 449
SsiI	CCGC	5 cut(s)	72, 80, 173, 363, 378
SstI	GAGCTC	1 cut(s)	166
StyD4I	CCNGG	1 cut(s)	242
TaaI	ACNGT	4 cut(s)	115, 143, 277, 330
TaiI	ACGT	3 cut(s)	353, 661, 676
TaqI	TCGA	1 cut(s)	257
TasI	AATT	4 cut(s)	107, 209, 238, 449
TatI	WGTACW	1 cut(s)	138
TauI	GCSGC	1 cut(s)	74
TfiI	GAWTC	1 cut(s)	254
TscAI	CASTG	3 cut(s)	22, 207, 282
TseI	GCWGC	4 cut(s)	68, 130, 548, 551
TspDTI	ATGAA	2 cut(s)	475, 623
TspRI	CASTG	3 cut(s)	22, 207, 282
XapI	RAATTY	1 cut(s)	449
XcmI	CCANNNNNNNNNTGG	1 cut(s)	461
XmiI	GTMKAC	1 cut(s)	374
XmnI	GAANNNNTTC	1 cut(s)	301
ZrmI	AGTACT	1 cut(s)	140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.