Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000539.1

Orthogroup ID

OG0003898

Physical Location & Seq

Genomic Coordinates Reverse (-)

409465 .. 414047

Gene Structure 4583 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000539.1_g000091.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1242 bp

atgtatgtgactggagatgaagaggatgagaaggctcacaaggggtttcacaatgactatacccgcggaatacaattcaagggttggtgcaatgagagggttgttcattcgcttaaagtgggaggagctcggattcttttggtcttggatggtgatcctcctgctcagaggaacaaggttgagaaagttgtgacaatgatggagactgagcttggcagtgggtggattctgcccaagttgtttaaggtgtatctgtttgttttgtccgcaagaattgtaggctgtctggttgccgaacctataacaaaagcacacaaagtcctatcttgtgcagttgatggaagctcaagttctgctagtacagcaacaaagaaaacaaagttaactactctccagtttggggaaatcaaatttcacagggaagtcattagaaaagccccttctgctcctgaaccattgaatgagtgtttcactggtgctatcgtttgtgaaaaggaagcagtacccgctgtctgtggcattagagccatttgggtcactccagctaacagaagaaaacacatagccacccacttattggatgccctgaggaaaagtttctgcatgggatttgtccttgagcactctcagttggcattctctccactaacatcggctggaaacgcattgatccatgacgacctcatatgccgcttcgtcatttcccagcaaaacgaagcagaatcgcgtagagacgatggccaagcgtttatggtcaacaagctccgcaagctcctagtcgaggagctccggcgcgaggttcgccgttgcgacaaaattcggtgggcggcggctagtgaccggaatccggcagtcagtgaccggaatcaggcgatcggttaccggaatccggcgaaagtttgcctgagttttgcggccggtgacctggctcccgcgaagtctcctatgcttggcaaactttgccctttcaattggcgctggcgaagaagctcagttcaactactccgacgaccacctagggtttcggcgagtgcaatgaccttcattcagattcagtttgatttgtcaaaaatagcttcggaggatgtgaaactaagagaaacggcagtctcggaaattcacaatctagccaaagaggctaagttagcgactagcgagagagggcgttatcaagctcccagcctcgctgttctcaatgtctgcaagtctctcgtcatcgacgatgttgccagtggagtgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000070 GO:0000278 GO:0000280 GO:0000724 GO:0000725 GO:0000819 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0007135 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009553 GO:0009790 GO:0009791 GO:0009793 GO:0009908 GO:0009956 GO:0009987 GO:0010154 GO:0016043 GO:0016407 GO:0016740 GO:0016746 GO:0016747 GO:0022402 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0034085 GO:0034089 GO:0034641 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0045132 GO:0045144 GO:0046483 GO:0048229 GO:0048285 GO:0048316 GO:0048364 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048589 GO:0048608 GO:0048609 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051177 GO:0051276 GO:0051321 GO:0051716 GO:0060771 GO:0060772 GO:0061458 GO:0061983 GO:0070192 GO:0071704 GO:0071840 GO:0080186 GO:0090304 GO:0090567 GO:0098813 GO:0099402 GO:0140013 GO:0140014 GO:1901360 GO:1903046 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_13 zf-C2H2_3

Protein Analysis

413

Amino Acids

45.83

Weight (kDa)

9.43

Isoelectric Point (pI)

47.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003898)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31400 AT4G31400
fragaria_vesca	FvH4_6g20270
malus_domestica	MD10G1054000.v1.1 MD12G1039800.v1.1 MD14G1038400.v1.1
prunus_persica	Prupe.7G095100_v2.0.a1
pyrus_communis	pycom01g00980 pycom12g03380
rosa_chinensis	RchiOBHm_Chr1g0331051 RchiOBHm_Chr3g0475861
rosa_laevigata	RLG00000001160 RLG00000023805 RLG00000029757
rosa_multiflora	Rmu_sc0000539.1_g000091 Rmu_sc0000539.1_g000092 Rmu_sc0002515.1_g000002
rosa_roxburghii	Rroxscaffold_3G00226030 Rroxscaffold_4G00319510 Rroxscaffold_6G00405780
rosa_rugosa	Rorug01G0093800 Rorug03G0151800 Rorug07G0290800
rosa_samantha	Rh1AG113600 Rh1CG110400 Rh1DG119200 Rh3AG201800 Rh3BG232300 Rh3CG226900 Rh3DG227400 Rh7BG417600 Rh7CG466100
rosa_wichuraiana	Rw1G009260 Rw3G018370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	577
AccII	CGCG	4 cut(s)	66, 727, 795, 935
AclWI	GGATC	2 cut(s)	149, 664
AcoI	YGGCCR	2 cut(s)	739, 915
AcsI	RAATTY	3 cut(s)	410, 816, 1116
AfaI	GTAC	2 cut(s)	361, 504
AfiI	CCNNNNNNNGG	8 cut(s)	400, 577, 781, 796, 847, 868, 889, 950
AgsI	TTSAA	4 cut(s)	79, 460, 970, 998
AjnI	CCWGG	1 cut(s)	924
Alw21I	GWGCWC	3 cut(s)	130, 624, 789
Alw26I	GTCTC	5 cut(s)	197, 726, 945, 1114, 1212
AlwI	GGATC	2 cut(s)	149, 664
AoxI	GGCC	2 cut(s)	739, 915
ApoI	RAATTY	3 cut(s)	410, 816, 1116
Asp700I	GAANNNNTTC	1 cut(s)	596
AspA2I	CCTAGG	1 cut(s)	1016
AspLEI	GCGC	2 cut(s)	795, 978
AsuHPI	GGTGA	2 cut(s)	164, 932
AvrII	CCTAGG	1 cut(s)	1016
AxyI	CCTNAGG	1 cut(s)	587
BalI	TGGCCA	1 cut(s)	741
BanII	GRGCYC	2 cut(s)	130, 789
Bbv12I	GWGCWC	3 cut(s)	130, 624, 789
BccI	CCATC	4 cut(s)	143, 193, 332, 731
BceAI	ACGGC	2 cut(s)	789, 1119
BcgI	CGANNNNNNTGC	4 cut(s)	1192, 1208, 1226, 1242
BciT130I	CCWGG	1 cut(s)	926
BcoDI	GTCTC	5 cut(s)	197, 726, 945, 1114, 1212
BfaI	CTAG	6 cut(s)	357, 776, 834, 1017, 1127, 1152
BfoI	RGCGCY	1 cut(s)	979
BglI	GCCNNNNNGGC	1 cut(s)	1136
BisI	GCNGC	4 cut(s)	691, 828, 831, 915
BlnI	CCTAGG	1 cut(s)	1016
BlsI	GCNGC	4 cut(s)	692, 829, 832, 916
Bme1390I	CCNGG	1 cut(s)	926
BmiI	GGNNCC	1 cut(s)	930
BmrFI	CCNGG	1 cut(s)	926
BmsI	GCATC	1 cut(s)	571
BpmI	CTGGAG	3 cut(s)	33, 377, 525
BpuEI	CTTGAG	2 cut(s)	331, 638
BsaBI	GATNNNNATC	1 cut(s)	153
BsaJI	CCNNGG	2 cut(s)	64, 1016
BsaWI	WCCGGW	3 cut(s)	840, 861, 882
Bsc4I	CCNNNNNNNGG	8 cut(s)	400, 577, 781, 796, 847, 868, 889, 950
Bse118I	RCCGGY	1 cut(s)	917
Bse1I	ACTGG	4 cut(s)	16, 394, 478, 1230
Bse21I	CCTNAGG	1 cut(s)	587
Bse3DI	GCAATG	2 cut(s)	97, 1041
Bse8I	GATNNNNATC	1 cut(s)	153
BseBI	CCWGG	1 cut(s)	926
BseDI	CCNNGG	2 cut(s)	64, 1016
BseGI	GGATG	4 cut(s)	31, 154, 586, 1090
BseJI	GATNNNNATC	1 cut(s)	153
BseLI	CCNNNNNNNGG	8 cut(s)	400, 577, 781, 796, 847, 868, 889, 950
BseMI	GCAATG	2 cut(s)	97, 1041
BseMII	CTCAG	6 cut(s)	179, 198, 578, 641, 896, 1005
BseNI	ACTGG	4 cut(s)	16, 394, 478, 1230
BseRI	GAGGAG	2 cut(s)	138, 797
BseX3I	CGGCCG	1 cut(s)	915
BseYI	CCCAGC	2 cut(s)	705, 1178
BsgI	GTGCAG	1 cut(s)	351
Bsh1236I	CGCG	4 cut(s)	66, 727, 795, 935
Bsh1285I	CGRYCG	2 cut(s)	876, 918
BshFI	GGCC	2 cut(s)	741, 917
BsiEI	CGRYCG	2 cut(s)	876, 918
BsiHKAI	GWGCWC	3 cut(s)	130, 624, 789
BsiSI	CCGG	7 cut(s)	790, 841, 848, 862, 883, 890, 918
BslI	CCNNNNNNNGG	8 cut(s)	400, 577, 781, 796, 847, 868, 889, 950
BsmAI	GTCTC	5 cut(s)	197, 726, 945, 1114, 1212
BsmBI	CGTCTC	1 cut(s)	726
BsmI	GAATGC	1 cut(s)	635
BsnI	GGCC	2 cut(s)	741, 917
Bsp1286I	GDGCHC	3 cut(s)	130, 624, 789
Bsp143I	GATC	3 cut(s)	154, 669, 873
BspANI	GGCC	2 cut(s)	741, 917
BspCNI	CTCAG	6 cut(s)	178, 199, 579, 640, 897, 1004
BspFNI	CGCG	4 cut(s)	66, 727, 795, 935
BspLI	GGNNCC	1 cut(s)	930
BspPI	GGATC	2 cut(s)	149, 664
BsrDI	GCAATG	2 cut(s)	97, 1041
BsrFI	RCCGGY	1 cut(s)	917
BsrI	ACTGG	4 cut(s)	16, 394, 478, 1230
BssAI	RCCGGY	1 cut(s)	917
BssECI	CCNNGG	2 cut(s)	64, 1016
BssMI	GATC	3 cut(s)	154, 669, 873
BssT1I	CCWWGG	1 cut(s)	1016
Bst2UI	CCWGG	1 cut(s)	926
Bst6I	CTCTTC	1 cut(s)	15
BstAPI	GCANNNNNTGC	1 cut(s)	960
BstC8I	GCNNGC	2 cut(s)	770, 980
BstDEI	CTNAG	8 cut(s)	165, 207, 587, 627, 905, 991, 1094, 1140
BstDSI	CCRYGG	1 cut(s)	64
BstEII	GGTNACC	2 cut(s)	878, 920
BstENI	CCTNNNNNAGG	1 cut(s)	779
BstF5I	GGATG	4 cut(s)	31, 154, 586, 1090
BstFNI	CGCG	4 cut(s)	66, 727, 795, 935
BstH2I	RGCGCY	1 cut(s)	979
BstHHI	GCGC	2 cut(s)	795, 978
BstKTI	GATC	3 cut(s)	157, 672, 876
BstMAI	GTCTC	5 cut(s)	197, 726, 945, 1114, 1212
BstMBI	GATC	3 cut(s)	154, 669, 873
BstMCI	CGRYCG	2 cut(s)	876, 918
BstMWI	GCNNNNNNNGC	9 cut(s)	362, 443, 506, 662, 769, 801, 960, 1136, 1145
BstNI	CCWGG	1 cut(s)	926
BstPI	GGTNACC	2 cut(s)	878, 920
BstSCI	CCNGG	1 cut(s)	924
BstUI	CGCG	4 cut(s)	66, 727, 795, 935
BstZI	CGGCCG	1 cut(s)	915
Bsu36I	CCTNAGG	1 cut(s)	587
BsuRI	GGCC	2 cut(s)	741, 917
BtgI	CCRYGG	1 cut(s)	64
BtsCI	GGATG	4 cut(s)	31, 154, 586, 1090
BtsI	GCAGTG	1 cut(s)	223
BtsIMutI	CAGTG	4 cut(s)	223, 471, 862, 1237
Cac8I	GCNNGC	2 cut(s)	770, 980
CfoI	GCGC	2 cut(s)	795, 978
Cfr10I	RCCGGY	1 cut(s)	917
Cfr42I	CCGCGG	1 cut(s)	67
Csp6I	GTAC	2 cut(s)	360, 503
CviAII	CATG	2 cut(s)	604, 674
CviQI	GTAC	2 cut(s)	360, 503
DdeI	CTNAG	8 cut(s)	165, 207, 587, 627, 905, 991, 1094, 1140
DpnI	GATC	3 cut(s)	156, 671, 875
DpnII	GATC	3 cut(s)	154, 669, 873
EaeI	YGGCCR	2 cut(s)	739, 915
EagI	CGGCCG	1 cut(s)	915
Eam1104I	CTCTTC	1 cut(s)	15
EarI	CTCTTC	1 cut(s)	15
Ecl136II	GAGCTC	2 cut(s)	128, 787
EclXI	CGGCCG	1 cut(s)	915
Eco130I	CCWWGG	1 cut(s)	1016
Eco24I	GRGCYC	2 cut(s)	130, 789
Eco52I	CGGCCG	1 cut(s)	915
Eco53kI	GAGCTC	2 cut(s)	128, 787
Eco81I	CCTNAGG	1 cut(s)	587
Eco91I	GGTNACC	2 cut(s)	878, 920
EcoICRI	GAGCTC	2 cut(s)	128, 787
EcoNI	CCTNNNNNAGG	1 cut(s)	779
EcoO65I	GGTNACC	2 cut(s)	878, 920
EcoRII	CCWGG	1 cut(s)	924
EcoT14I	CCWWGG	1 cut(s)	1016
EcoT38I	GRGCYC	2 cut(s)	130, 789
ErhI	CCWWGG	1 cut(s)	1016
Esp3I	CGTCTC	1 cut(s)	726
FaeI	CATG	2 cut(s)	607, 677
FatI	CATG	2 cut(s)	603, 673
FauI	CCCGC	3 cut(s)	71, 514, 940
FauNDI	CATATG	1 cut(s)	686
Fnu4HI	GCNGC	4 cut(s)	691, 828, 831, 915
FokI	GGATG	4 cut(s)	38, 161, 593, 1097
FriOI	GRGCYC	2 cut(s)	130, 789
Fsp4HI	GCNGC	4 cut(s)	691, 828, 831, 915
FspBI	CTAG	6 cut(s)	357, 776, 834, 1017, 1127, 1152
GlaI	GCGC	2 cut(s)	794, 977
GluI	GCNGC	4 cut(s)	691, 828, 831, 915
GsaI	CCCAGC	2 cut(s)	709, 1182
GsuI	CTGGAG	3 cut(s)	33, 377, 525
HaeII	RGCGCY	1 cut(s)	979
HaeIII	GGCC	2 cut(s)	741, 917
HapII	CCGG	7 cut(s)	790, 841, 848, 862, 883, 890, 918
HhaI	GCGC	2 cut(s)	795, 978
Hin1II	CATG	2 cut(s)	607, 677
Hin6I	GCGC	2 cut(s)	793, 976
HinP1I	GCGC	2 cut(s)	793, 976
HincII	GTYRAC	2 cut(s)	384, 757
HindII	GTYRAC	2 cut(s)	384, 757
HinfI	GANTC	7 cut(s)	133, 226, 722, 844, 865, 886, 1051
HpaI	GTTAAC	1 cut(s)	384
HpaII	CCGG	7 cut(s)	790, 841, 848, 862, 883, 890, 918
HphI	GGTGA	2 cut(s)	164, 932
Hpy166II	GTNNAC	2 cut(s)	384, 757
Hpy188I	TCNGA	6 cut(s)	132, 168, 1007, 1050, 1081, 1114
Hpy188III	TCNNGA	1 cut(s)	449
Hpy8I	GTNNAC	2 cut(s)	384, 757
Hpy99I	CGWCG	2 cut(s)	1011, 1223
HpyAV	CCTTC	3 cut(s)	25, 450, 1051
HpyCH4V	TGCA	5 cut(s)	90, 332, 603, 1034, 1203
HpyF10VI	GCNNNNNNNGC	9 cut(s)	362, 443, 506, 662, 769, 801, 960, 1136, 1145
HpyF3I	CTNAG	8 cut(s)	165, 207, 587, 627, 905, 991, 1094, 1140
Hsp92II	CATG	2 cut(s)	607, 677
HspAI	GCGC	2 cut(s)	793, 976
KspAI	GTTAAC	1 cut(s)	384
KspI	CCGCGG	1 cut(s)	67
Kzo9I	GATC	3 cut(s)	154, 669, 873
LmnI	GCTCC	8 cut(s)	125, 451, 768, 777, 784, 792, 934, 1180
LweI	GCATC	1 cut(s)	571
MaeI	CTAG	6 cut(s)	357, 776, 834, 1017, 1127, 1152
MaeIII	GTNAC	7 cut(s)	7, 190, 535, 836, 857, 878, 920
MalI	GATC	3 cut(s)	156, 671, 875
MboI	GATC	3 cut(s)	154, 669, 873
MboII	GAAGA	3 cut(s)	32, 564, 996
MfeI	CAATTG	1 cut(s)	970
MhlI	GDGCHC	3 cut(s)	130, 624, 789
MlsI	TGGCCA	1 cut(s)	741
MluCI	AATT	6 cut(s)	74, 273, 410, 816, 970, 1116
MluNI	TGGCCA	1 cut(s)	741
MmeI	TCCRAC	1 cut(s)	1030
Mox20I	TGGCCA	1 cut(s)	741
MroXI	GAANNNNTTC	1 cut(s)	596
MscI	TGGCCA	1 cut(s)	741
MseI	TTAA	3 cut(s)	114, 243, 383
Msp20I	TGGCCA	1 cut(s)	741
MspA1I	CMGCKG	2 cut(s)	66, 509
MspI	CCGG	7 cut(s)	790, 841, 848, 862, 883, 890, 918
MspR9I	CCNGG	1 cut(s)	926
MunI	CAATTG	1 cut(s)	970
Mva1269I	GAATGC	1 cut(s)	635
MvaI	CCWGG	1 cut(s)	926
MvnI	CGCG	4 cut(s)	66, 727, 795, 935
MwoI	GCNNNNNNNGC	9 cut(s)	362, 443, 506, 662, 769, 801, 960, 1136, 1145
NdeI	CATATG	1 cut(s)	686
NdeII	GATC	3 cut(s)	154, 669, 873
NlaIII	CATG	2 cut(s)	607, 677
NlaIV	GGNNCC	1 cut(s)	930
NmuCI	GTSAC	6 cut(s)	7, 190, 535, 836, 857, 920
PcsI	WCGNNNNNNNCGW	1 cut(s)	1218
PctI	GAATGC	1 cut(s)	635
PdmI	GAANNNNTTC	1 cut(s)	596
PfeI	GAWTC	7 cut(s)	133, 226, 722, 844, 865, 886, 1051
PflMI	CCANNNNNTGG	1 cut(s)	577
PkrI	GCNGC	4 cut(s)	692, 829, 832, 916
Ple19I	CGATCG	1 cut(s)	876
Psp124BI	GAGCTC	2 cut(s)	130, 789
Psp6I	CCWGG	1 cut(s)	924
PspEI	GGTNACC	2 cut(s)	878, 920
PspFI	CCCAGC	2 cut(s)	705, 1178
PspGI	CCWGG	1 cut(s)	924
PspN4I	GGNNCC	1 cut(s)	930
PvuI	CGATCG	1 cut(s)	876
RsaI	GTAC	2 cut(s)	361, 504
RsaNI	GTAC	2 cut(s)	360, 503
SacI	GAGCTC	2 cut(s)	130, 789
SacII	CCGCGG	1 cut(s)	67
SaqAI	TTAA	3 cut(s)	114, 243, 383
SatI	GCNGC	4 cut(s)	691, 828, 831, 915
Sau3AI	GATC	3 cut(s)	154, 669, 873
ScrFI	CCNGG	1 cut(s)	926
SduI	GDGCHC	3 cut(s)	130, 624, 789
SfaNI	GCATC	1 cut(s)	571
Sfr303I	CCGCGG	1 cut(s)	67
SgrBI	CCGCGG	1 cut(s)	67
SmlI	CTYRAG	2 cut(s)	346, 617
SmoI	CTYRAG	2 cut(s)	346, 617
Sse9I	AATT	6 cut(s)	74, 273, 410, 816, 970, 1116
SspMI	CTAG	6 cut(s)	357, 776, 834, 1017, 1127, 1152
SstI	GAGCTC	2 cut(s)	130, 789
StyD4I	CCNGG	1 cut(s)	924
StyI	CCWWGG	1 cut(s)	1016
TaqI	TCGA	2 cut(s)	780, 1218
TasI	AATT	6 cut(s)	74, 273, 410, 816, 970, 1116
TatI	WGTACW	1 cut(s)	359
TauI	GCSGC	4 cut(s)	693, 830, 833, 917
TfiI	GAWTC	7 cut(s)	133, 226, 722, 844, 865, 886, 1051
Tru1I	TTAA	3 cut(s)	114, 243, 383
Tru9I	TTAA	3 cut(s)	114, 243, 383
TscAI	CASTG	4 cut(s)	223, 478, 862, 1237
TseFI	GTSAC	6 cut(s)	7, 190, 535, 836, 857, 920
Tsp45I	GTSAC	6 cut(s)	7, 190, 535, 836, 857, 920
TspDTI	ATGAA	3 cut(s)	33, 95, 1033
TspRI	CASTG	4 cut(s)	223, 478, 862, 1237
Van91I	CCANNNNNTGG	1 cut(s)	577
XagI	CCTNNNNNAGG	1 cut(s)	779
XapI	RAATTY	3 cut(s)	410, 816, 1116
XcmI	CCANNNNNNNNNTGG	1 cut(s)	574
XmaJI	CCTAGG	1 cut(s)	1016
XmnI	GAANNNNTTC	1 cut(s)	596
XspI	CTAG	6 cut(s)	357, 776, 834, 1017, 1127, 1152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.