Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0003898

Physical Location & Seq

Genomic Coordinates Forward (+)

48629572 .. 48631781

Gene Structure 2210 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029757

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGCAATCAAAGATCAGTGCCTTCTTCAAACCCTCTTCTTCTTCTTCTTCTTCTGTTTCACCCAAACCAGCAGACCCACCTCCCATTTTCGACGACGACGGCCAGGAATTGAGCATCTGGGAAAAGAAGCAACACCAACAATTCTCCACCTACAAGCGAAGAGCTCCAAACCCACCAAGGGGTGGGAGTGAGTGTAGTTGGGATAACCAGTTGGCAAAGACACCCATTTCGGATGTCGACTCTCCCAAGCCTGAATCGACAGTATTGGGAAAGACAGTGACCAAGAACAAGAAGAGAAGCTATGCTCAGTACCATCTAGACTTGGGTCAGTCTGACTTTCTTCTGCACACTTGTTCCGCATGTGGCGTCATGTATGTGACTGGAGATGAAGAGGATGAGAAGGCTCACAAGGGATTTCACAATGACTGTACCCGCGGAATACAATTCAAGGGTTGGTGCAATGAGAGGGTTGTTCATTCGCTTAAAGTGGGAGGAGGTCGGATTCTTTTGGTGTTGGATGGTGATCCTCCTGCTCAGAGGAACAAGGTTGAGAAAGTTGTGACAATGATGGAGACTGAGCTTGGCAGTGGGTGGATTCTGCCCAAGTTGTTTAAGGTGTATCTGTTTGTTTTGTCCGCAAGAATTGTAGGCTGTCTGGTTGCCGAACCTATAACAAAAGCACACAAAGTCCTATCTTGTGCAGTTGATGGAAGCTCAAGTTTTGCTAGTACGGCAACAAAGAAAACAAAGTTAACTACTCTCCAGTTTGGGGAAATCAAATTTCACAGGGAAGTCATTAGAAAAGCCCCTTCTGCTCCTGAACCATTGAATGAGTGTTTCACTGGTGCTATCGTTTGTGAAAAGGAAGCAGTACCCGCTGTCTGTGGCATTAGAGCCATTTGGGTCACTCCAGCTAACAGAAGAAAACACATAGCCACCCACTTATTGGATGCCCTGAGGAAAAGTTTCTGCATGGGATTTGTCCTTGAGCACTCTCAGTTGGCATTCTCTCCACTAACATCGGCTGGAAACGCATTGGTATCAAATTATATTGGCAGTGGACATTTCTTGGTGTACAACACAAACAATGTGGTCTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000070 GO:0000278 GO:0000280 GO:0000724 GO:0000725 GO:0000819 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0007135 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009553 GO:0009790 GO:0009791 GO:0009793 GO:0009908 GO:0009956 GO:0009987 GO:0010154 GO:0016043 GO:0016407 GO:0016740 GO:0016746 GO:0016747 GO:0022402 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0034085 GO:0034089 GO:0034641 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0045132 GO:0045144 GO:0046483 GO:0048229 GO:0048285 GO:0048316 GO:0048364 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048589 GO:0048608 GO:0048609 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051177 GO:0051276 GO:0051321 GO:0051716 GO:0060771 GO:0060772 GO:0061458 GO:0061983 GO:0070192 GO:0071704 GO:0071840 GO:0080186 GO:0090304 GO:0090567 GO:0098813 GO:0099402 GO:0140013 GO:0140014 GO:1901360 GO:1903046 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_13 zf-C2H2_3

Protein Analysis

367

Amino Acids

40.17

Weight (kDa)

9.01

Isoelectric Point (pI)

46.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_3	PF13878	103 - 141	1.2e-14	zinc-finger of acetyl-transferase ESCO
Acetyltransf_13	PF13880	291 - 359	3e-25	ESCO1/2 acetyl-transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003898)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31400 AT4G31400
fragaria_vesca	FvH4_6g20270
malus_domestica	MD10G1054000.v1.1 MD12G1039800.v1.1 MD14G1038400.v1.1
prunus_persica	Prupe.7G095100_v2.0.a1
pyrus_communis	pycom01g00980 pycom12g03380
rosa_chinensis	RchiOBHm_Chr1g0331051 RchiOBHm_Chr3g0475861
rosa_laevigata	RLG00000001160 RLG00000023805 RLG00000029757
rosa_multiflora	Rmu_sc0000539.1_g000091 Rmu_sc0000539.1_g000092 Rmu_sc0002515.1_g000002
rosa_roxburghii	Rroxscaffold_3G00226030 Rroxscaffold_4G00319510 Rroxscaffold_6G00405780
rosa_rugosa	Rorug01G0093800 Rorug03G0151800 Rorug07G0290800
rosa_samantha	Rh1AG113600 Rh1CG110400 Rh1DG119200 Rh3AG201800 Rh3BG232300 Rh3CG226900 Rh3DG227400 Rh7BG417600 Rh7CG466100
rosa_wichuraiana	Rw1G009260 Rw3G018370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	182, 946
AccI	GTMKAC	1 cut(s)	237
AccII	CGCG	1 cut(s)	435
AciI	CCGC	5 cut(s)	357, 433, 435, 636, 876
AclWI	GGATC	1 cut(s)	518
AcoI	YGGCCR	1 cut(s)	100
AcsI	RAATTY	1 cut(s)	779
AcyI	GRCGYC	1 cut(s)	366
AfaI	GTAC	5 cut(s)	311, 430, 730, 873, 1076
AfiI	CCNNNNNNNGG	5 cut(s)	178, 179, 182, 769, 946
AgsI	TTSAA	3 cut(s)	28, 448, 829
AjnI	CCWGG	1 cut(s)	102
AluBI	AGCT	5 cut(s)	164, 300, 580, 714, 914
AluI	AGCT	5 cut(s)	164, 300, 580, 714, 914
Alw21I	GWGCWC	2 cut(s)	166, 993
Alw26I	GTCTC	1 cut(s)	566
AlwI	GGATC	1 cut(s)	518
AoxI	GGCC	1 cut(s)	100
ApoI	RAATTY	1 cut(s)	779
ArsI	GACNNNNNNTTYG	2 cut(s)	211, 243
Asp700I	GAANNNNTTC	1 cut(s)	965
AsuHPI	GGTGA	2 cut(s)	51, 533
AxyI	CCTNAGG	1 cut(s)	956
BanII	GRGCYC	1 cut(s)	166
Bbv12I	GWGCWC	2 cut(s)	166, 993
BccI	CCATC	4 cut(s)	321, 512, 562, 701
BceAI	ACGGC	2 cut(s)	115, 747
BciT130I	CCWGG	1 cut(s)	104
BcoDI	GTCTC	1 cut(s)	566
BfaI	CTAG	2 cut(s)	317, 726
Bme1390I	CCNGG	1 cut(s)	104
BmrFI	CCNGG	1 cut(s)	104
BmsI	GCATC	2 cut(s)	123, 940
BoxI	GACNNNNGTC	1 cut(s)	324
BpmI	CTGGAG	3 cut(s)	402, 746, 894
BpuEI	CTTGAG	2 cut(s)	700, 1007
BsaBI	GATNNNNATC	1 cut(s)	522
BsaHI	GRCGYC	1 cut(s)	366
BsaJI	CCNNGG	2 cut(s)	176, 433
BsaXI	ACNNNNNCTCC	2 cut(s)	178, 208
Bsc4I	CCNNNNNNNGG	5 cut(s)	178, 179, 182, 769, 946
Bse1I	ACTGG	4 cut(s)	208, 385, 763, 847
Bse21I	CCTNAGG	1 cut(s)	956
Bse3DI	GCAATG	1 cut(s)	466
Bse8I	GATNNNNATC	1 cut(s)	522
BseBI	CCWGG	1 cut(s)	104
BseDI	CCNNGG	2 cut(s)	176, 433
BseGI	GGATG	4 cut(s)	238, 400, 523, 955
BseJI	GATNNNNATC	1 cut(s)	522
BseLI	CCNNNNNNNGG	5 cut(s)	178, 179, 182, 769, 946
BseMI	GCAATG	1 cut(s)	466
BseMII	CTCAG	5 cut(s)	320, 548, 567, 947, 1010
BseNI	ACTGG	4 cut(s)	208, 385, 763, 847
BseRI	GAGGAG	1 cut(s)	507
BsgI	GTGCAG	2 cut(s)	329, 720
Bsh1236I	CGCG	1 cut(s)	435
BshFI	GGCC	1 cut(s)	102
BsiHKAI	GWGCWC	2 cut(s)	166, 993
BslI	CCNNNNNNNGG	5 cut(s)	178, 179, 182, 769, 946
BsmAI	GTCTC	1 cut(s)	566
BsmI	GAATGC	1 cut(s)	1004
BsnI	GGCC	1 cut(s)	102
Bsp1286I	GDGCHC	2 cut(s)	166, 993
Bsp1407I	TGTACA	1 cut(s)	1074
Bsp143I	GATC	2 cut(s)	12, 523
BspACI	CCGC	5 cut(s)	357, 433, 435, 636, 876
BspANI	GGCC	1 cut(s)	102
BspCNI	CTCAG	5 cut(s)	319, 547, 568, 948, 1009
BspFNI	CGCG	1 cut(s)	435
BspPI	GGATC	1 cut(s)	518
BspQI	GCTCTTC	1 cut(s)	154
BsrDI	GCAATG	1 cut(s)	466
BsrGI	TGTACA	1 cut(s)	1074
BsrI	ACTGG	4 cut(s)	208, 385, 763, 847
BssECI	CCNNGG	2 cut(s)	176, 433
BssMI	GATC	2 cut(s)	12, 523
BssNI	GRCGYC	1 cut(s)	366
BssT1I	CCWWGG	1 cut(s)	176
Bst2UI	CCWGG	1 cut(s)	104
Bst4CI	ACNGT	3 cut(s)	262, 277, 428
Bst6I	CTCTTC	4 cut(s)	40, 154, 287, 384
BstACI	GRCGYC	1 cut(s)	366
BstAUI	TGTACA	1 cut(s)	1074
BstDEI	CTNAG	5 cut(s)	306, 534, 576, 956, 996
BstDSI	CCRYGG	1 cut(s)	433
BstF5I	GGATG	4 cut(s)	238, 400, 523, 955
BstFNI	CGCG	1 cut(s)	435
BstKTI	GATC	2 cut(s)	15, 526
BstMAI	GTCTC	1 cut(s)	566
BstMBI	GATC	2 cut(s)	12, 523
BstMWI	GCNNNNNNNGC	4 cut(s)	731, 812, 875, 1031
BstNI	CCWGG	1 cut(s)	104
BstNSI	RCATGY	1 cut(s)	363
BstPAI	GACNNNNGTC	1 cut(s)	324
BstSCI	CCNGG	1 cut(s)	102
BstUI	CGCG	1 cut(s)	435
Bsu36I	CCTNAGG	1 cut(s)	956
BsuRI	GGCC	1 cut(s)	102
BtgI	CCRYGG	1 cut(s)	433
BtsCI	GGATG	4 cut(s)	238, 400, 523, 955
BtsI	GCAGTG	2 cut(s)	592, 1063
BtsIMutI	CAGTG	5 cut(s)	22, 282, 592, 840, 1063
Cfr42I	CCGCGG	1 cut(s)	436
CseI	GACGC	1 cut(s)	355
Csp6I	GTAC	5 cut(s)	310, 429, 729, 872, 1075
CspCI	CAANNNNNGTGG	1 cut(s)	1071
CviAII	CATG	3 cut(s)	360, 370, 973
CviQI	GTAC	5 cut(s)	310, 429, 729, 872, 1075
DdeI	CTNAG	5 cut(s)	306, 534, 576, 956, 996
DpnI	GATC	2 cut(s)	14, 525
DpnII	GATC	2 cut(s)	12, 523
EaeI	YGGCCR	1 cut(s)	100
Eam1104I	CTCTTC	4 cut(s)	40, 154, 287, 384
EarI	CTCTTC	4 cut(s)	40, 154, 287, 384
Ecl136II	GAGCTC	1 cut(s)	164
Eco130I	CCWWGG	1 cut(s)	176
Eco24I	GRGCYC	1 cut(s)	166
Eco53kI	GAGCTC	1 cut(s)	164
Eco81I	CCTNAGG	1 cut(s)	956
EcoICRI	GAGCTC	1 cut(s)	164
EcoRII	CCWGG	1 cut(s)	102
EcoT14I	CCWWGG	1 cut(s)	176
EcoT38I	GRGCYC	1 cut(s)	166
ErhI	CCWWGG	1 cut(s)	176
FaeI	CATG	3 cut(s)	363, 373, 976
FaiI	YATR	9 cut(s)	303, 361, 371, 375, 671, 932, 974, 1050, 1099
FatI	CATG	3 cut(s)	359, 369, 972
FauI	CCCGC	2 cut(s)	440, 883
FblI	GTMKAC	1 cut(s)	237
FokI	GGATG	4 cut(s)	245, 407, 530, 962
FriOI	GRGCYC	1 cut(s)	166
FspBI	CTAG	2 cut(s)	317, 726
GsuI	CTGGAG	3 cut(s)	402, 746, 894
HaeIII	GGCC	1 cut(s)	102
HgaI	GACGC	1 cut(s)	355
Hin1I	GRCGYC	1 cut(s)	366
Hin1II	CATG	3 cut(s)	363, 373, 976
HincII	GTYRAC	2 cut(s)	238, 753
HindII	GTYRAC	2 cut(s)	238, 753
HinfI	GANTC	4 cut(s)	239, 254, 502, 595
HpaI	GTTAAC	1 cut(s)	753
HphI	GGTGA	2 cut(s)	51, 533
Hpy166II	GTNNAC	4 cut(s)	238, 753, 1061, 1075
Hpy188I	TCNGA	4 cut(s)	232, 334, 501, 537
Hpy188III	TCNNGA	2 cut(s)	317, 818
Hpy8I	GTNNAC	4 cut(s)	238, 753, 1061, 1075
Hpy99I	CGWCG	3 cut(s)	95, 98, 101
HpyAV	CCTTC	3 cut(s)	31, 394, 819
HpyCH4III	ACNGT	3 cut(s)	262, 277, 428
HpyCH4V	TGCA	5 cut(s)	4, 346, 459, 701, 972
HpyF10VI	GCNNNNNNNGC	4 cut(s)	731, 812, 875, 1031
HpyF3I	CTNAG	5 cut(s)	306, 534, 576, 956, 996
Hsp92I	GRCGYC	1 cut(s)	366
Hsp92II	CATG	3 cut(s)	363, 373, 976
KspAI	GTTAAC	1 cut(s)	753
KspI	CCGCGG	1 cut(s)	436
Kzo9I	GATC	2 cut(s)	12, 523
LguI	GCTCTTC	1 cut(s)	154
LmnI	GCTCC	2 cut(s)	169, 820
LweI	GCATC	2 cut(s)	123, 940
MaeI	CTAG	2 cut(s)	317, 726
MaeIII	GTNAC	4 cut(s)	277, 376, 559, 904
MalI	GATC	2 cut(s)	14, 525
MboI	GATC	2 cut(s)	12, 523
MhlI	GDGCHC	2 cut(s)	166, 993
MluCI	AATT	6 cut(s)	107, 140, 443, 642, 779, 1045
MlyI	GAGTC	1 cut(s)	233
MmeI	TCCRAC	2 cut(s)	479, 495
MnlI	CCTC	9 cut(s)	43, 90, 385, 459, 485, 488, 531, 537, 951
MroXI	GAANNNNTTC	1 cut(s)	965
MseI	TTAA	3 cut(s)	483, 612, 752
MslI	CAYNNNNRTG	1 cut(s)	374
MspA1I	CMGCKG	2 cut(s)	435, 878
MspR9I	CCNGG	1 cut(s)	104
Mva1269I	GAATGC	1 cut(s)	1004
MvaI	CCWGG	1 cut(s)	104
MvnI	CGCG	1 cut(s)	435
MwoI	GCNNNNNNNGC	4 cut(s)	731, 812, 875, 1031
NdeII	GATC	2 cut(s)	12, 523
NlaIII	CATG	3 cut(s)	363, 373, 976
NmuCI	GTSAC	4 cut(s)	277, 376, 559, 904
NspI	RCATGY	1 cut(s)	363
PciSI	GCTCTTC	1 cut(s)	154
PctI	GAATGC	1 cut(s)	1004
PdmI	GAANNNNTTC	1 cut(s)	965
PfeI	GAWTC	3 cut(s)	254, 502, 595
PflMI	CCANNNNNTGG	2 cut(s)	182, 946
PleI	GAGTC	1 cut(s)	233
PpsI	GAGTC	1 cut(s)	233
PshAI	GACNNNNGTC	1 cut(s)	324
Psp124BI	GAGCTC	1 cut(s)	166
Psp6I	CCWGG	1 cut(s)	102
PspGI	CCWGG	1 cut(s)	102
RsaI	GTAC	5 cut(s)	311, 430, 730, 873, 1076
RsaNI	GTAC	5 cut(s)	310, 429, 729, 872, 1075
RseI	CAYNNNNRTG	1 cut(s)	374
SacI	GAGCTC	1 cut(s)	166
SacII	CCGCGG	1 cut(s)	436
SalI	GTCGAC	1 cut(s)	236
SapI	GCTCTTC	1 cut(s)	154
SaqAI	TTAA	3 cut(s)	483, 612, 752
Sau3AI	GATC	2 cut(s)	12, 523
SchI	GAGTC	1 cut(s)	233
ScrFI	CCNGG	1 cut(s)	104
SduI	GDGCHC	2 cut(s)	166, 993
SfaNI	GCATC	2 cut(s)	123, 940
Sfr303I	CCGCGG	1 cut(s)	436
SgrBI	CCGCGG	1 cut(s)	436
SmiMI	CAYNNNNRTG	1 cut(s)	374
SmlI	CTYRAG	2 cut(s)	715, 986
SmoI	CTYRAG	2 cut(s)	715, 986
Sse9I	AATT	6 cut(s)	107, 140, 443, 642, 779, 1045
SsiI	CCGC	5 cut(s)	357, 433, 435, 636, 876
SspMI	CTAG	2 cut(s)	317, 726
SstI	GAGCTC	1 cut(s)	166
StyD4I	CCNGG	1 cut(s)	102
StyI	CCWWGG	1 cut(s)	176
TaaI	ACNGT	3 cut(s)	262, 277, 428
TaqI	TCGA	3 cut(s)	90, 237, 257
TasI	AATT	6 cut(s)	107, 140, 443, 642, 779, 1045
TatI	WGTACW	1 cut(s)	1074
TfiI	GAWTC	3 cut(s)	254, 502, 595
Tru1I	TTAA	3 cut(s)	483, 612, 752
Tru9I	TTAA	3 cut(s)	483, 612, 752
TscAI	CASTG	5 cut(s)	22, 282, 592, 847, 1063
TseFI	GTSAC	4 cut(s)	277, 376, 559, 904
Tsp45I	GTSAC	4 cut(s)	277, 376, 559, 904
TspDTI	ATGAA	2 cut(s)	402, 464
TspRI	CASTG	5 cut(s)	22, 282, 592, 847, 1063
Van91I	CCANNNNNTGG	2 cut(s)	182, 946
XapI	RAATTY	1 cut(s)	779
XbaI	TCTAGA	1 cut(s)	316
XceI	RCATGY	1 cut(s)	363
XcmI	CCANNNNNNNNNTGG	1 cut(s)	943
XmiI	GTMKAC	1 cut(s)	237
XmnI	GAANNNNTTC	1 cut(s)	965
XspI	CTAG	2 cut(s)	317, 726

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.