Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0003898

Physical Location & Seq

Genomic Coordinates Forward (+)

9494052 .. 9505817

Gene Structure 11766 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00226030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGGAGATCAAGCGGTGGGTTAGACAGACGGCCCAGATCGTCCCGTTCTCTCGTTTCGGTATTGCTGTCTTGGTTTTTAGGACTTTCTTTTTGTTTGCTTATGTTATTGTTCTTCTCTCCTTTATCGCTGCATGCTTGTCTTTCAATGATGAATTTGCCATGCTAAGCCATTTGGGTCACTCAGCTAACAGAAGAAAGCACATAGCCACTCAGTTACTGGATGCCCTGAGGAAAAGTTTCTGCATGGGATTTGTGCTTGAACGCTCCCAGTTGGCATTTTCTGAACTAACATCTGCTGGAAATGCATTGGCATCAAATTATGTTGGCCGTGACCATGTTCTAGTGTACAACACCTTCAATACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000070 GO:0000278 GO:0000280 GO:0000724 GO:0000725 GO:0000819 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0007135 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009553 GO:0009790 GO:0009791 GO:0009793 GO:0009908 GO:0009956 GO:0009987 GO:0010154 GO:0016043 GO:0016407 GO:0016740 GO:0016746 GO:0016747 GO:0022402 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0034085 GO:0034089 GO:0034641 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0045132 GO:0045144 GO:0046483 GO:0048229 GO:0048285 GO:0048316 GO:0048364 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048589 GO:0048608 GO:0048609 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051177 GO:0051276 GO:0051321 GO:0051716 GO:0060771 GO:0060772 GO:0061458 GO:0061983 GO:0070192 GO:0071704 GO:0071840 GO:0080186 GO:0090304 GO:0090567 GO:0098813 GO:0099402 GO:0140013 GO:0140014 GO:1901360 GO:1903046 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_13 zf-C2H2_3

Protein Analysis

121

Amino Acids

13.76

Weight (kDa)

9.77

Isoelectric Point (pI)

44.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acetyltransf_13	PF13880	60 - 116	5.5e-19	ESCO1/2 acetyl-transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0003898)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31400 AT4G31400
fragaria_vesca	FvH4_6g20270
malus_domestica	MD10G1054000.v1.1 MD12G1039800.v1.1 MD14G1038400.v1.1
prunus_persica	Prupe.7G095100_v2.0.a1
pyrus_communis	pycom01g00980 pycom12g03380
rosa_chinensis	RchiOBHm_Chr1g0331051 RchiOBHm_Chr3g0475861
rosa_laevigata	RLG00000001160 RLG00000023805 RLG00000029757
rosa_multiflora	Rmu_sc0000539.1_g000091 Rmu_sc0000539.1_g000092 Rmu_sc0002515.1_g000002
rosa_roxburghii	Rroxscaffold_3G00226030 Rroxscaffold_4G00319510 Rroxscaffold_6G00405780
rosa_rugosa	Rorug01G0093800 Rorug03G0151800 Rorug07G0290800
rosa_samantha	Rh1AG113600 Rh1CG110400 Rh1DG119200 Rh3AG201800 Rh3BG232300 Rh3CG226900 Rh3DG227400 Rh7BG417600 Rh7CG466100
rosa_wichuraiana	Rw1G009260 Rw3G018370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	13
AcoI	YGGCCR	1 cut(s)	325
AcsI	RAATTY	1 cut(s)	152
AfaI	GTAC	1 cut(s)	347
AgsI	TTSAA	3 cut(s)	145, 260, 358
AluBI	AGCT	1 cut(s)	185
AluI	AGCT	1 cut(s)	185
AlwNI	CAGNNNCTG	1 cut(s)	217
AoxI	GGCC	2 cut(s)	30, 325
ApeKI	GCWGC	1 cut(s)	128
ApoI	RAATTY	1 cut(s)	152
ArsI	GACNNNNNNTTYG	2 cut(s)	73, 105
Asp700I	GAANNNNTTC	1 cut(s)	236
AspS9I	GGNCC	1 cut(s)	31
AxyI	CCTNAGG	1 cut(s)	227
BarI	GAAGNNNNNNTAC	1 cut(s)	338
BbvI	GCAGC	1 cut(s)	115
BceAI	ACGGC	2 cut(s)	45, 312
BfaI	CTAG	1 cut(s)	341
BisI	GCNGC	1 cut(s)	129
BlpI	GCTNAGC	1 cut(s)	164
BlsI	GCNGC	1 cut(s)	130
BmgT120I	GGNCC	1 cut(s)	31
BmrI	ACTGGG	1 cut(s)	262
BmsI	GCATC	2 cut(s)	211, 320
BmuI	ACTGGG	1 cut(s)	262
Bpu1102I	GCTNAGC	1 cut(s)	164
Bse1I	ACTGG	2 cut(s)	222, 268
Bse21I	CCTNAGG	1 cut(s)	227
BseGI	GGATG	1 cut(s)	226
BseMII	CTCAG	3 cut(s)	195, 218, 224
BseNI	ACTGG	2 cut(s)	222, 268
BseXI	GCAGC	1 cut(s)	115
BshFI	GGCC	2 cut(s)	32, 327
BslFI	GGGAC	1 cut(s)	26
BsmFI	GGGAC	1 cut(s)	26
BsnI	GGCC	2 cut(s)	32, 327
Bsp1407I	TGTACA	1 cut(s)	345
Bsp143I	GATC	2 cut(s)	6, 36
Bsp1720I	GCTNAGC	1 cut(s)	164
BspACI	CCGC	1 cut(s)	13
BspANI	GGCC	2 cut(s)	32, 327
BspCNI	CTCAG	3 cut(s)	194, 219, 223
BsrGI	TGTACA	1 cut(s)	345
BsrI	ACTGG	2 cut(s)	222, 268
BssMI	GATC	2 cut(s)	6, 36
BstAUI	TGTACA	1 cut(s)	345
BstC8I	GCNNGC	1 cut(s)	133
BstDEI	CTNAG	4 cut(s)	164, 181, 210, 227
BstF5I	GGATG	1 cut(s)	226
BstKTI	GATC	2 cut(s)	9, 39
BstMBI	GATC	2 cut(s)	6, 36
BstMWI	GCNNNNNNNGC	1 cut(s)	302
BstNSI	RCATGY	1 cut(s)	135
BstV1I	GCAGC	1 cut(s)	115
Bsu36I	CCTNAGG	1 cut(s)	227
BsuRI	GGCC	2 cut(s)	32, 327
BtsCI	GGATG	1 cut(s)	226
Cac8I	GCNNGC	1 cut(s)	133
CaiI	CAGNNNCTG	1 cut(s)	217
Cfr13I	GGNCC	1 cut(s)	31
Csp6I	GTAC	1 cut(s)	346
CviAII	CATG	4 cut(s)	132, 160, 244, 335
CviJI	RGCY	5 cut(s)	32, 168, 185, 206, 327
CviKI_1	RGCY	5 cut(s)	32, 168, 185, 206, 327
CviQI	GTAC	1 cut(s)	346
DdeI	CTNAG	4 cut(s)	164, 181, 210, 227
DpnI	GATC	2 cut(s)	8, 38
DpnII	GATC	2 cut(s)	6, 36
EaeI	YGGCCR	1 cut(s)	325
Eco81I	CCTNAGG	1 cut(s)	227
EcoT22I	ATGCAT	1 cut(s)	307
FaeI	CATG	4 cut(s)	135, 163, 247, 338
FaiI	YATR	8 cut(s)	102, 133, 161, 203, 245, 321, 336, 364
FaqI	GGGAC	1 cut(s)	26
FatI	CATG	4 cut(s)	131, 159, 243, 334
Fnu4HI	GCNGC	1 cut(s)	129
FokI	GGATG	1 cut(s)	233
Fsp4HI	GCNGC	1 cut(s)	129
FspBI	CTAG	1 cut(s)	341
GluI	GCNGC	1 cut(s)	129
HaeIII	GGCC	2 cut(s)	32, 327
Hin1II	CATG	4 cut(s)	135, 163, 247, 338
Hpy166II	GTNNAC	1 cut(s)	346
Hpy188I	TCNGA	1 cut(s)	283
Hpy8I	GTNNAC	1 cut(s)	346
HpyAV	CCTTC	1 cut(s)	364
HpyCH4V	TGCA	3 cut(s)	131, 243, 305
HpyF10VI	GCNNNNNNNGC	1 cut(s)	302
HpyF3I	CTNAG	4 cut(s)	164, 181, 210, 227
Hsp92II	CATG	4 cut(s)	135, 163, 247, 338
Kzo9I	GATC	2 cut(s)	6, 36
LmnI	GCTCC	1 cut(s)	269
LpnPI	CCDG	5 cut(s)	47, 203, 239, 281, 282
Lsp1109I	GCAGC	1 cut(s)	115
LweI	GCATC	2 cut(s)	211, 320
MaeI	CTAG	1 cut(s)	341
MaeIII	GTNAC	3 cut(s)	176, 213, 329
MalI	GATC	2 cut(s)	8, 38
MboI	GATC	2 cut(s)	6, 36
MboII	GAAGA	2 cut(s)	104, 204
MluCI	AATT	2 cut(s)	152, 316
MnlI	CCTC	1 cut(s)	222
Mph1103I	ATGCAT	1 cut(s)	307
MroXI	GAANNNNTTC	1 cut(s)	236
MwoI	GCNNNNNNNGC	1 cut(s)	302
NdeII	GATC	2 cut(s)	6, 36
NlaIII	CATG	4 cut(s)	135, 163, 247, 338
NmuCI	GTSAC	2 cut(s)	176, 329
NsiI	ATGCAT	1 cut(s)	307
NspI	RCATGY	1 cut(s)	135
PaeI	GCATGC	1 cut(s)	135
PdmI	GAANNNNTTC	1 cut(s)	236
PkrI	GCNGC	1 cut(s)	130
PspPI	GGNCC	1 cut(s)	31
PstNI	CAGNNNCTG	1 cut(s)	217
RsaI	GTAC	1 cut(s)	347
RsaNI	GTAC	1 cut(s)	346
SatI	GCNGC	1 cut(s)	129
Sau3AI	GATC	2 cut(s)	6, 36
Sau96I	GGNCC	1 cut(s)	31
SetI	ASST	2 cut(s)	187, 356
SfaNI	GCATC	2 cut(s)	211, 320
SphI	GCATGC	1 cut(s)	135
Sse9I	AATT	2 cut(s)	152, 316
SsiI	CCGC	1 cut(s)	13
SspMI	CTAG	1 cut(s)	341
TasI	AATT	2 cut(s)	152, 316
TatI	WGTACW	1 cut(s)	345
TseFI	GTSAC	2 cut(s)	176, 329
TseI	GCWGC	1 cut(s)	128
Tsp45I	GTSAC	2 cut(s)	176, 329
TspDTI	ATGAA	1 cut(s)	165
XapI	RAATTY	1 cut(s)	152
XceI	RCATGY	1 cut(s)	135
XcmI	CCANNNNNNNNNTGG	1 cut(s)	214
XmnI	GAANNNNTTC	1 cut(s)	236
XspI	CTAG	1 cut(s)	341
Zsp2I	ATGCAT	1 cut(s)	307

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.