Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0003898

Physical Location & Seq

Genomic Coordinates Forward (+)

28264305 .. 28266519

Gene Structure 2215 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00405780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGTGTAACCCAAAATTCCAAATTCCACAATCAAATTCCTCTCGTTCATTCATTGATGCGATGCAATCAAAGATCAGTGCCTTCTTCAAACCCTCTTCTTCTTCTGTTTCACCCAAACCAGCAGACCCACCTCCCATTTTCGACGGCGACGACGACCAGGAATTGAGCGTCTGGGAAAAGAAGCAACACCAACAATTCTCCACCTACAAGCGAAGAGCTCCAAACCCACCAAGGGGTGGGAATGAAGAGGATGAGAAGGCTCACAAGGGATTTCACAATGACTATAGCCGCGGAATACAATTCAAGGGTTGGTGCAATGAGAGGGTTGTTCATTCGCTTAAAGTTGGAGGAGGTCGGATTCTTTTGGTGTTGGATGGTGATCCTCCTGCTCAGAGGAACAAGGTTGAGAAAGTTGTGACAATGATGGAGACTGAGCTTGGCAGTGGGTGGATTCTGCCCAAGTTGTTTAAGGTGTATCTGTTTGTTTTGTCCGCAAGAATTGTAGGCTGTCTGGTTGCCGAACCTATAACAAAAGCACACAAAGTCCTATCTTGTGCAGTTGATGGAAGTTCAAGTTCTGCTAGTACGAAAACAAATAAAACAAAGTTAACTACTCTCCAGTTTGGGGAAATCAAATTTCACAGGGAAGTCATTAGAAAAGCCCCTTCTGCTCCTGAACCATTGAATGAGTGTTTCACTGGTGCTATCATTTGTGAAAAGGAAGCAGTACCCGCTGTCTGTGGCATTAGAGCCATTTGGGTCACTCCAGCAAACAGAAGAAAACACATAGCCACCCACTTATTGGATGCCCTGAGGAAAAGTTTCTGCATGGGATTTGTCCTTGAGCACTCTCAGTTGGCATTCTCTCCACTAACATCGGCTGGAAACGCATTGGTATCAAATTATATTGGCAGTGGACATTTCTTGGTGTACAACACAAACAATGTCTTCTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000070 GO:0000278 GO:0000280 GO:0000724 GO:0000725 GO:0000819 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0007135 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009553 GO:0009790 GO:0009791 GO:0009793 GO:0009908 GO:0009956 GO:0009987 GO:0010154 GO:0016043 GO:0016407 GO:0016740 GO:0016746 GO:0016747 GO:0022402 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0034085 GO:0034089 GO:0034641 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0045132 GO:0045144 GO:0046483 GO:0048229 GO:0048285 GO:0048316 GO:0048364 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048589 GO:0048608 GO:0048609 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051177 GO:0051276 GO:0051321 GO:0051716 GO:0060771 GO:0060772 GO:0061458 GO:0061983 GO:0070192 GO:0071704 GO:0071840 GO:0080186 GO:0090304 GO:0090567 GO:0098813 GO:0099402 GO:0140013 GO:0140014 GO:1901360 GO:1903046 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_13 zf-C2H2_3

Protein Analysis

318

Amino Acids

35.12

Weight (kDa)

9.28

Isoelectric Point (pI)

44.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acetyltransf_13	PF13880	243 - 311	2.4e-25	ESCO1/2 acetyl-transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003898)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31400 AT4G31400
fragaria_vesca	FvH4_6g20270
malus_domestica	MD10G1054000.v1.1 MD12G1039800.v1.1 MD14G1038400.v1.1
prunus_persica	Prupe.7G095100_v2.0.a1
pyrus_communis	pycom01g00980 pycom12g03380
rosa_chinensis	RchiOBHm_Chr1g0331051 RchiOBHm_Chr3g0475861
rosa_laevigata	RLG00000001160 RLG00000023805 RLG00000029757
rosa_multiflora	Rmu_sc0000539.1_g000091 Rmu_sc0000539.1_g000092 Rmu_sc0002515.1_g000002
rosa_roxburghii	Rroxscaffold_3G00226030 Rroxscaffold_4G00319510 Rroxscaffold_6G00405780
rosa_rugosa	Rorug01G0093800 Rorug03G0151800 Rorug07G0290800
rosa_samantha	Rh1AG113600 Rh1CG110400 Rh1DG119200 Rh3AG201800 Rh3BG232300 Rh3CG226900 Rh3DG227400 Rh7BG417600 Rh7CG466100
rosa_wichuraiana	Rw1G009260 Rw3G018370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	236, 802
AccII	CGCG	1 cut(s)	291
AciI	CCGC	4 cut(s)	289, 291, 492, 732
AclWI	GGATC	1 cut(s)	374
AcsI	RAATTY	4 cut(s)	14, 21, 34, 635
AfaI	GTAC	3 cut(s)	586, 729, 932
AfiI	CCNNNNNNNGG	5 cut(s)	232, 233, 236, 625, 802
AgsI	TTSAA	4 cut(s)	88, 304, 573, 685
AjnI	CCWGG	1 cut(s)	156
AluBI	AGCT	2 cut(s)	218, 436
AluI	AGCT	2 cut(s)	218, 436
Alw21I	GWGCWC	2 cut(s)	220, 849
Alw26I	GTCTC	1 cut(s)	422
AlwI	GGATC	1 cut(s)	374
ApoI	RAATTY	4 cut(s)	14, 21, 34, 635
Asp700I	GAANNNNTTC	1 cut(s)	821
AsuHPI	GGTGA	2 cut(s)	102, 389
AxyI	CCTNAGG	1 cut(s)	812
BanII	GRGCYC	1 cut(s)	220
BbsI	GAAGAC	1 cut(s)	940
Bbv12I	GWGCWC	2 cut(s)	220, 849
BccI	CCATC	3 cut(s)	368, 418, 557
BceAI	ACGGC	1 cut(s)	160
BciT130I	CCWGG	1 cut(s)	158
BcoDI	GTCTC	1 cut(s)	422
BfaI	CTAG	1 cut(s)	582
BfmI	CTRYAG	1 cut(s)	283
BisI	GCNGC	1 cut(s)	289
BlsI	GCNGC	1 cut(s)	290
Bme1390I	CCNGG	1 cut(s)	158
BmrFI	CCNGG	1 cut(s)	158
BmsI	GCATC	3 cut(s)	46, 51, 796
BpiI	GAAGAC	1 cut(s)	940
BpmI	CTGGAG	2 cut(s)	602, 750
BpuEI	CTTGAG	1 cut(s)	863
BsaBI	GATNNNNATC	1 cut(s)	378
BsaJI	CCNNGG	2 cut(s)	230, 289
Bsc4I	CCNNNNNNNGG	5 cut(s)	232, 233, 236, 625, 802
Bse1I	ACTGG	2 cut(s)	619, 703
Bse21I	CCTNAGG	1 cut(s)	812
Bse3DI	GCAATG	1 cut(s)	322
Bse8I	GATNNNNATC	1 cut(s)	378
BseBI	CCWGG	1 cut(s)	158
BseDI	CCNNGG	2 cut(s)	230, 289
BseGI	GGATG	3 cut(s)	256, 379, 811
BseJI	GATNNNNATC	1 cut(s)	378
BseLI	CCNNNNNNNGG	5 cut(s)	232, 233, 236, 625, 802
BseMI	GCAATG	1 cut(s)	322
BseMII	CTCAG	4 cut(s)	404, 423, 803, 866
BseNI	ACTGG	2 cut(s)	619, 703
BseRI	GAGGAG	1 cut(s)	363
BsgI	GTGCAG	1 cut(s)	576
Bsh1236I	CGCG	1 cut(s)	291
BsiHKAI	GWGCWC	2 cut(s)	220, 849
BslI	CCNNNNNNNGG	5 cut(s)	232, 233, 236, 625, 802
BsmAI	GTCTC	1 cut(s)	422
BsmI	GAATGC	1 cut(s)	860
Bsp1286I	GDGCHC	2 cut(s)	220, 849
Bsp1407I	TGTACA	1 cut(s)	930
Bsp143I	GATC	2 cut(s)	72, 379
BspACI	CCGC	4 cut(s)	289, 291, 492, 732
BspCNI	CTCAG	4 cut(s)	403, 424, 804, 865
BspFNI	CGCG	1 cut(s)	291
BspPI	GGATC	1 cut(s)	374
BspQI	GCTCTTC	1 cut(s)	208
BsrDI	GCAATG	1 cut(s)	322
BsrGI	TGTACA	1 cut(s)	930
BsrI	ACTGG	2 cut(s)	619, 703
BssECI	CCNNGG	2 cut(s)	230, 289
BssMI	GATC	2 cut(s)	72, 379
BssT1I	CCWWGG	1 cut(s)	230
Bst2UI	CCWGG	1 cut(s)	158
Bst6I	CTCTTC	3 cut(s)	100, 208, 240
BstAUI	TGTACA	1 cut(s)	930
BstDEI	CTNAG	4 cut(s)	390, 432, 812, 852
BstDSI	CCRYGG	1 cut(s)	289
BstF5I	GGATG	3 cut(s)	256, 379, 811
BstFNI	CGCG	1 cut(s)	291
BstKTI	GATC	2 cut(s)	75, 382
BstMAI	GTCTC	1 cut(s)	422
BstMBI	GATC	2 cut(s)	72, 379
BstMWI	GCNNNNNNNGC	3 cut(s)	668, 731, 887
BstNI	CCWGG	1 cut(s)	158
BstSCI	CCNGG	1 cut(s)	156
BstSFI	CTRYAG	1 cut(s)	283
BstUI	CGCG	1 cut(s)	291
BstV2I	GAAGAC	1 cut(s)	940
Bsu36I	CCTNAGG	1 cut(s)	812
BtgI	CCRYGG	1 cut(s)	289
BtgZI	GCGATG	1 cut(s)	74
BtsCI	GGATG	3 cut(s)	256, 379, 811
BtsI	GCAGTG	2 cut(s)	448, 919
BtsIMutI	CAGTG	4 cut(s)	82, 448, 696, 919
Cfr42I	CCGCGG	1 cut(s)	292
CseI	GACGC	1 cut(s)	157
Csp6I	GTAC	3 cut(s)	585, 728, 931
CviAII	CATG	1 cut(s)	829
CviJI	RGCY	9 cut(s)	218, 260, 288, 436, 507, 662, 752, 791, 881
CviKI_1	RGCY	9 cut(s)	218, 260, 288, 436, 507, 662, 752, 791, 881
CviQI	GTAC	3 cut(s)	585, 728, 931
DdeI	CTNAG	4 cut(s)	390, 432, 812, 852
DpnI	GATC	2 cut(s)	74, 381
DpnII	GATC	2 cut(s)	72, 379
Eam1104I	CTCTTC	3 cut(s)	100, 208, 240
EarI	CTCTTC	3 cut(s)	100, 208, 240
Ecl136II	GAGCTC	1 cut(s)	218
Eco130I	CCWWGG	1 cut(s)	230
Eco24I	GRGCYC	1 cut(s)	220
Eco53kI	GAGCTC	1 cut(s)	218
Eco81I	CCTNAGG	1 cut(s)	812
EcoICRI	GAGCTC	1 cut(s)	218
EcoRII	CCWGG	1 cut(s)	156
EcoT14I	CCWWGG	1 cut(s)	230
EcoT38I	GRGCYC	1 cut(s)	220
ErhI	CCWWGG	1 cut(s)	230
FaeI	CATG	1 cut(s)	832
FaiI	YATR	6 cut(s)	285, 527, 788, 830, 906, 955
FatI	CATG	1 cut(s)	828
FauI	CCCGC	1 cut(s)	739
Fnu4HI	GCNGC	1 cut(s)	289
FokI	GGATG	3 cut(s)	263, 386, 818
FriOI	GRGCYC	1 cut(s)	220
Fsp4HI	GCNGC	1 cut(s)	289
FspBI	CTAG	1 cut(s)	582
GluI	GCNGC	1 cut(s)	289
GsuI	CTGGAG	2 cut(s)	602, 750
HgaI	GACGC	1 cut(s)	157
Hin1II	CATG	1 cut(s)	832
HincII	GTYRAC	1 cut(s)	609
HindII	GTYRAC	1 cut(s)	609
HinfI	GANTC	2 cut(s)	358, 451
HpaI	GTTAAC	1 cut(s)	609
HphI	GGTGA	2 cut(s)	102, 389
Hpy166II	GTNNAC	3 cut(s)	609, 917, 931
Hpy188I	TCNGA	2 cut(s)	357, 393
Hpy188III	TCNNGA	1 cut(s)	674
Hpy8I	GTNNAC	3 cut(s)	609, 917, 931
Hpy99I	CGWCG	3 cut(s)	146, 152, 155
HpyAV	CCTTC	3 cut(s)	91, 250, 675
HpyCH4V	TGCA	4 cut(s)	64, 315, 557, 828
HpyF10VI	GCNNNNNNNGC	3 cut(s)	668, 731, 887
HpyF3I	CTNAG	4 cut(s)	390, 432, 812, 852
Hsp92II	CATG	1 cut(s)	832
KspAI	GTTAAC	1 cut(s)	609
KspI	CCGCGG	1 cut(s)	292
Kzo9I	GATC	2 cut(s)	72, 379
LguI	GCTCTTC	1 cut(s)	208
LmnI	GCTCC	2 cut(s)	223, 676
LweI	GCATC	3 cut(s)	46, 51, 796
MaeI	CTAG	1 cut(s)	582
MaeIII	GTNAC	3 cut(s)	5, 415, 760
MalI	GATC	2 cut(s)	74, 381
MboI	GATC	2 cut(s)	72, 379
MboII	GAAGA	8 cut(s)	76, 87, 90, 93, 225, 257, 789, 940
MhlI	GDGCHC	2 cut(s)	220, 849
MluCI	AATT	9 cut(s)	14, 21, 34, 161, 194, 299, 498, 635, 901
MmeI	TCCRAC	3 cut(s)	325, 335, 351
MroXI	GAANNNNTTC	1 cut(s)	821
MseI	TTAA	3 cut(s)	339, 468, 608
MspA1I	CMGCKG	2 cut(s)	291, 734
MspR9I	CCNGG	1 cut(s)	158
Mva1269I	GAATGC	1 cut(s)	860
MvaI	CCWGG	1 cut(s)	158
MvnI	CGCG	1 cut(s)	291
MwoI	GCNNNNNNNGC	3 cut(s)	668, 731, 887
NdeII	GATC	2 cut(s)	72, 379
NlaIII	CATG	1 cut(s)	832
NmuCI	GTSAC	2 cut(s)	415, 760
PciSI	GCTCTTC	1 cut(s)	208
PcsI	WCGNNNNNNNCGW	2 cut(s)	147, 150
PctI	GAATGC	1 cut(s)	860
PdmI	GAANNNNTTC	1 cut(s)	821
PfeI	GAWTC	2 cut(s)	358, 451
PflMI	CCANNNNNTGG	2 cut(s)	236, 802
PkrI	GCNGC	1 cut(s)	290
Psp124BI	GAGCTC	1 cut(s)	220
Psp6I	CCWGG	1 cut(s)	156
PspGI	CCWGG	1 cut(s)	156
RsaI	GTAC	3 cut(s)	586, 729, 932
RsaNI	GTAC	3 cut(s)	585, 728, 931
SacI	GAGCTC	1 cut(s)	220
SacII	CCGCGG	1 cut(s)	292
SapI	GCTCTTC	1 cut(s)	208
SaqAI	TTAA	3 cut(s)	339, 468, 608
SatI	GCNGC	1 cut(s)	289
Sau3AI	GATC	2 cut(s)	72, 379
ScrFI	CCNGG	1 cut(s)	158
SduI	GDGCHC	2 cut(s)	220, 849
SetI	ASST	8 cut(s)	133, 206, 220, 355, 405, 438, 474, 526
SfaNI	GCATC	3 cut(s)	46, 51, 796
SfcI	CTRYAG	1 cut(s)	283
Sfr303I	CCGCGG	1 cut(s)	292
SgrBI	CCGCGG	1 cut(s)	292
SmlI	CTYRAG	1 cut(s)	842
SmoI	CTYRAG	1 cut(s)	842
Sse9I	AATT	9 cut(s)	14, 21, 34, 161, 194, 299, 498, 635, 901
SsiI	CCGC	4 cut(s)	289, 291, 492, 732
SspMI	CTAG	1 cut(s)	582
SstI	GAGCTC	1 cut(s)	220
StyD4I	CCNGG	1 cut(s)	156
StyI	CCWWGG	1 cut(s)	230
TaqI	TCGA	1 cut(s)	141
TasI	AATT	9 cut(s)	14, 21, 34, 161, 194, 299, 498, 635, 901
TatI	WGTACW	1 cut(s)	930
TauI	GCSGC	1 cut(s)	291
TfiI	GAWTC	2 cut(s)	358, 451
Tru1I	TTAA	3 cut(s)	339, 468, 608
Tru9I	TTAA	3 cut(s)	339, 468, 608
TscAI	CASTG	4 cut(s)	82, 448, 703, 919
TseFI	GTSAC	2 cut(s)	415, 760
Tsp45I	GTSAC	2 cut(s)	415, 760
TspDTI	ATGAA	4 cut(s)	36, 40, 258, 320
TspRI	CASTG	4 cut(s)	82, 448, 703, 919
Van91I	CCANNNNNTGG	2 cut(s)	236, 802
XapI	RAATTY	4 cut(s)	14, 21, 34, 635
XcmI	CCANNNNNNNNNTGG	1 cut(s)	799
XmnI	GAANNNNTTC	1 cut(s)	821
XspI	CTAG	1 cut(s)	582

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.