Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0003898

Physical Location & Seq

Genomic Coordinates Reverse (-)

47143121 .. 47156118

Gene Structure 12998 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG417600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGAATGATGCTGATGATGTTGTTTTGGACGAGTTGGATTTGGAAGCTGCCAGCAATACTATGAGTGACATTAATGAGTGGTTTGTGTATGATGGAGCAGAAAATAATGTGTCTACTGCAATAAATGAAGAACCAGTTCTAGAAGCTATTGTACCACCAGGTAACGAGGTTGTAGAGTTGAATGAGCATAATAATCATGCTGAGATACCGATAGAGGCGCAGAATTTTGCACCACAACAGGTTAATGATGTAGTACAGCCCGAACCACCAGTACCTGAGCTACAGCAAGAACCAGTTTCTGCTGCATTGTATGTTTCAAGGAGAAGACCTGCTATTGCTTTATTTTTGAAGGTGCATCTGTTTGTTTTGTCTCAGAGGGTTGTGGGCTGTCTGGTTGCAGAACCAATAAAAGCACACAAAGTCCTATCATGTACGGTTCATGGAAGTTCTGATGGTACTACTACTAATAAGACAAAAGTAAGTACTTCCGAATTTGGGGACATCAAATTTCCATTGAATGAGCATCTCAATGGTGCTATCATTTGTAAAAAGGAGGCAGTACCTGCTATCTGCGGTGTTAGAGCCATTTGGGTCACTCCAGCTAACAGAAGAAAGCACATAGCCACTCAGTTACTGGATGCCCTGAGGAAAAGTTTCTGCATGGGATTTGTGCTTGAACGCTCCCAGTTGGCATTTTCTGAACTAACATCTGCTGGAAATGCATTGGCATCAGATTATGTTGGCTGTGACCATGTTCTAGTTTACAACACCTTCAATACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000070 GO:0000278 GO:0000280 GO:0000724 GO:0000725 GO:0000819 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0007135 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009553 GO:0009790 GO:0009791 GO:0009793 GO:0009908 GO:0009956 GO:0009987 GO:0010154 GO:0016043 GO:0016407 GO:0016740 GO:0016746 GO:0016747 GO:0022402 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0034085 GO:0034089 GO:0034641 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0045132 GO:0045144 GO:0046483 GO:0048229 GO:0048285 GO:0048316 GO:0048364 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048589 GO:0048608 GO:0048609 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051177 GO:0051276 GO:0051321 GO:0051716 GO:0060771 GO:0060772 GO:0061458 GO:0061983 GO:0070192 GO:0071704 GO:0071840 GO:0080186 GO:0090304 GO:0090567 GO:0098813 GO:0099402 GO:0140013 GO:0140014 GO:1901360 GO:1903046 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_13 zf-C2H2_3

Protein Analysis

260

Amino Acids

28.43

Weight (kDa)

4.87

Isoelectric Point (pI)

48.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acetyltransf_13	PF13880	187 - 255	3e-25	ESCO1/2 acetyl-transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003898)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31400 AT4G31400
fragaria_vesca	FvH4_6g20270
malus_domestica	MD10G1054000.v1.1 MD12G1039800.v1.1 MD14G1038400.v1.1
prunus_persica	Prupe.7G095100_v2.0.a1
pyrus_communis	pycom01g00980 pycom12g03380
rosa_chinensis	RchiOBHm_Chr1g0331051 RchiOBHm_Chr3g0475861
rosa_laevigata	RLG00000001160 RLG00000023805 RLG00000029757
rosa_multiflora	Rmu_sc0000539.1_g000091 Rmu_sc0000539.1_g000092 Rmu_sc0002515.1_g000002
rosa_roxburghii	Rroxscaffold_3G00226030 Rroxscaffold_4G00319510 Rroxscaffold_6G00405780
rosa_rugosa	Rorug01G0093800 Rorug03G0151800 Rorug07G0290800
rosa_samantha	Rh1AG113600 Rh1CG110400 Rh1DG119200 Rh3AG201800 Rh3BG232300 Rh3CG226900 Rh3DG227400 Rh7BG417600 Rh7CG466100
rosa_wichuraiana	Rw1G009260 Rw3G018370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	337, 571
AccI	GTMKAC	1 cut(s)	113
AciI	CCGC	1 cut(s)	573
AcsI	RAATTY	3 cut(s)	223, 491, 506
AfaI	GTAC	7 cut(s)	153, 255, 273, 433, 457, 484, 561
AfiI	CCNNNNNNNGG	1 cut(s)	495
AgsI	TTSAA	6 cut(s)	181, 318, 349, 517, 677, 775
AjnI	CCWGG	1 cut(s)	157
AluBI	AGCT	4 cut(s)	47, 146, 280, 602
AluI	AGCT	4 cut(s)	47, 146, 280, 602
Alw26I	GTCTC	1 cut(s)	375
AlwNI	CAGNNNCTG	4 cut(s)	275, 299, 563, 634
ApeKI	GCWGC	2 cut(s)	47, 302
ApoI	RAATTY	3 cut(s)	223, 491, 506
AseI	ATTAAT	1 cut(s)	72
Asp700I	GAANNNNTTC	2 cut(s)	135, 653
AspLEI	GCGC	1 cut(s)	220
AxyI	CCTNAGG	1 cut(s)	644
BarI	GAAGNNNNNNTAC	2 cut(s)	135, 167
BbsI	GAAGAC	1 cut(s)	331
BbvI	GCAGC	2 cut(s)	34, 289
BccI	CCATC	2 cut(s)	86, 446
BciT130I	CCWGG	1 cut(s)	159
BcoDI	GTCTC	1 cut(s)	375
BfaI	CTAG	2 cut(s)	140, 758
BfmI	CTRYAG	1 cut(s)	281
BfuAI	ACCTGC	2 cut(s)	337, 571
BisI	GCNGC	2 cut(s)	48, 303
BlsI	GCNGC	2 cut(s)	49, 304
BmcAI	AGTACT	1 cut(s)	484
Bme1390I	CCNGG	1 cut(s)	159
BmrFI	CCNGG	1 cut(s)	159
BmrI	ACTGGG	1 cut(s)	679
BmsI	GCATC	4 cut(s)	364, 532, 628, 737
BmuI	ACTGGG	1 cut(s)	679
BpiI	GAAGAC	1 cut(s)	331
BpmI	CTGGAG	1 cut(s)	582
Bpu10I	CCTNAGC	1 cut(s)	276
Bsc4I	CCNNNNNNNGG	1 cut(s)	495
Bse1I	ACTGG	5 cut(s)	134, 269, 293, 639, 685
Bse21I	CCTNAGG	1 cut(s)	644
BseBI	CCWGG	1 cut(s)	159
BseGI	GGATG	1 cut(s)	643
BseLI	CCNNNNNNNGG	1 cut(s)	495
BseMII	CTCAG	5 cut(s)	192, 267, 386, 635, 641
BseNI	ACTGG	5 cut(s)	134, 269, 293, 639, 685
BseXI	GCAGC	2 cut(s)	34, 289
BslFI	GGGAC	1 cut(s)	512
BslI	CCNNNNNNNGG	1 cut(s)	495
BsmAI	GTCTC	1 cut(s)	375
BsmFI	GGGAC	1 cut(s)	512
BspACI	CCGC	1 cut(s)	573
BspCNI	CTCAG	5 cut(s)	193, 268, 385, 636, 640
BspMI	ACCTGC	2 cut(s)	337, 571
BsrI	ACTGG	5 cut(s)	134, 269, 293, 639, 685
Bst2UI	CCWGG	1 cut(s)	159
Bst4CI	ACNGT	1 cut(s)	436
BstAPI	GCANNNNNTGC	1 cut(s)	563
BstC8I	GCNNGC	1 cut(s)	52
BstDEI	CTNAG	5 cut(s)	201, 276, 372, 627, 644
BstF5I	GGATG	1 cut(s)	643
BstHHI	GCGC	1 cut(s)	220
BstMAI	GTCTC	1 cut(s)	375
BstMWI	GCNNNNNNNGC	2 cut(s)	563, 719
BstNI	CCWGG	1 cut(s)	159
BstSCI	CCNGG	1 cut(s)	157
BstSFI	CTRYAG	1 cut(s)	281
BstV1I	GCAGC	2 cut(s)	34, 289
BstV2I	GAAGAC	1 cut(s)	331
Bsu36I	CCTNAGG	1 cut(s)	644
BtsCI	GGATG	1 cut(s)	643
BveI	ACCTGC	2 cut(s)	337, 571
Cac8I	GCNNGC	1 cut(s)	52
CaiI	CAGNNNCTG	4 cut(s)	275, 299, 563, 634
CfoI	GCGC	1 cut(s)	220
CsiI	ACCWGGT	1 cut(s)	157
Csp6I	GTAC	7 cut(s)	152, 254, 272, 432, 456, 483, 560
CviAII	CATG	5 cut(s)	197, 429, 440, 661, 752
CviJI	RGCY	9 cut(s)	47, 146, 259, 280, 387, 584, 602, 623, 744
CviKI_1	RGCY	9 cut(s)	47, 146, 259, 280, 387, 584, 602, 623, 744
CviQI	GTAC	7 cut(s)	152, 254, 272, 432, 456, 483, 560
DdeI	CTNAG	5 cut(s)	201, 276, 372, 627, 644
Eco81I	CCTNAGG	1 cut(s)	644
EcoRII	CCWGG	1 cut(s)	157
EcoT22I	ATGCAT	1 cut(s)	724
FaeI	CATG	5 cut(s)	200, 432, 443, 664, 755
FaqI	GGGAC	1 cut(s)	512
FatI	CATG	5 cut(s)	196, 428, 439, 660, 751
FblI	GTMKAC	1 cut(s)	113
Fnu4HI	GCNGC	2 cut(s)	48, 303
FokI	GGATG	1 cut(s)	650
Fsp4HI	GCNGC	2 cut(s)	48, 303
FspBI	CTAG	2 cut(s)	140, 758
GlaI	GCGC	1 cut(s)	219
GluI	GCNGC	2 cut(s)	48, 303
GsuI	CTGGAG	1 cut(s)	582
HhaI	GCGC	1 cut(s)	220
Hin1II	CATG	5 cut(s)	200, 432, 443, 664, 755
Hin6I	GCGC	1 cut(s)	218
HinP1I	GCGC	1 cut(s)	218
Hpy166II	GTNNAC	2 cut(s)	114, 763
Hpy188I	TCNGA	5 cut(s)	375, 451, 490, 700, 733
Hpy188III	TCNNGA	1 cut(s)	140
Hpy8I	GTNNAC	2 cut(s)	114, 763
HpyAV	CCTTC	2 cut(s)	343, 781
HpyCH4III	ACNGT	1 cut(s)	436
HpyCH4V	TGCA	7 cut(s)	119, 230, 305, 355, 398, 660, 722
HpyF10VI	GCNNNNNNNGC	2 cut(s)	563, 719
HpyF3I	CTNAG	5 cut(s)	201, 276, 372, 627, 644
Hsp92II	CATG	5 cut(s)	200, 432, 443, 664, 755
HspAI	GCGC	1 cut(s)	218
LmnI	GCTCC	2 cut(s)	95, 686
Lsp1109I	GCAGC	2 cut(s)	34, 289
LweI	GCATC	4 cut(s)	364, 532, 628, 737
MabI	ACCWGGT	1 cut(s)	157
MaeI	CTAG	2 cut(s)	140, 758
MaeIII	GTNAC	5 cut(s)	65, 161, 592, 630, 746
MboII	GAAGA	3 cut(s)	140, 336, 621
MluCI	AATT	3 cut(s)	223, 491, 506
MmeI	TCCRAC	1 cut(s)	15
MnlI	CCTC	5 cut(s)	160, 208, 369, 547, 639
Mph1103I	ATGCAT	1 cut(s)	724
MroXI	GAANNNNTTC	2 cut(s)	135, 653
MseI	TTAA	2 cut(s)	72, 243
MslI	CAYNNNNRTG	1 cut(s)	528
MspR9I	CCNGG	1 cut(s)	159
MvaI	CCWGG	1 cut(s)	159
MwoI	GCNNNNNNNGC	2 cut(s)	563, 719
NlaIII	CATG	5 cut(s)	200, 432, 443, 664, 755
NmuCI	GTSAC	3 cut(s)	65, 592, 746
NsiI	ATGCAT	1 cut(s)	724
PdmI	GAANNNNTTC	2 cut(s)	135, 653
PkrI	GCNGC	2 cut(s)	49, 304
PshBI	ATTAAT	1 cut(s)	72
Psp6I	CCWGG	1 cut(s)	157
PspGI	CCWGG	1 cut(s)	157
PsrI	GAACNNNNNNTAC	2 cut(s)	255, 287
PstNI	CAGNNNCTG	4 cut(s)	275, 299, 563, 634
RsaI	GTAC	7 cut(s)	153, 255, 273, 433, 457, 484, 561
RsaNI	GTAC	7 cut(s)	152, 254, 272, 432, 456, 483, 560
RseI	CAYNNNNRTG	1 cut(s)	528
SaqAI	TTAA	2 cut(s)	72, 243
SatI	GCNGC	2 cut(s)	48, 303
ScaI	AGTACT	1 cut(s)	484
ScrFI	CCNGG	1 cut(s)	159
SexAI	ACCWGGT	1 cut(s)	157
SfaNI	GCATC	4 cut(s)	364, 532, 628, 737
SfcI	CTRYAG	1 cut(s)	281
SmiMI	CAYNNNNRTG	1 cut(s)	528
Sse9I	AATT	3 cut(s)	223, 491, 506
SsiI	CCGC	1 cut(s)	573
SspMI	CTAG	2 cut(s)	140, 758
StyD4I	CCNGG	1 cut(s)	157
TaaI	ACNGT	1 cut(s)	436
TasI	AATT	3 cut(s)	223, 491, 506
TatI	WGTACW	2 cut(s)	253, 482
Tru1I	TTAA	2 cut(s)	72, 243
Tru9I	TTAA	2 cut(s)	72, 243
TseFI	GTSAC	3 cut(s)	65, 592, 746
TseI	GCWGC	2 cut(s)	47, 302
Tsp45I	GTSAC	3 cut(s)	65, 592, 746
TspDTI	ATGAA	3 cut(s)	17, 141, 428
VspI	ATTAAT	1 cut(s)	72
XapI	RAATTY	3 cut(s)	223, 491, 506
XbaI	TCTAGA	1 cut(s)	139
XcmI	CCANNNNNNNNNTGG	1 cut(s)	631
XmiI	GTMKAC	1 cut(s)	113
XmnI	GAANNNNTTC	2 cut(s)	135, 653
XspI	CTAG	2 cut(s)	140, 758
ZrmI	AGTACT	1 cut(s)	484
Zsp2I	ATGCAT	1 cut(s)	724

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.