Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0003898

Physical Location & Seq

Genomic Coordinates Reverse (-)

22267186 .. 22269914

Gene Structure 2729 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG110400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGCAATCAAAGATCAGTGCCTTCTTCAAACCCTCTTCTTCTTCTTCTTCTGTTTCACCCAAACCAGCAGACCCACCTCCCATTTTCGACGACGACGGCCAGGAATTGAGCATCTGGGAAAAGAAGCAACACCAACAATTCTCCACCTACAAGCGAAGAGCTCCAAACCCACCAAGGGGTGGGAGTGAGTGTAGTTGGGATAACCAGTTGGCAAAGACACCCATTTCGGATGTCGACTCTCCCAAGCCTGAATCGACAGTATTGGGAAAGACAGTGACCAAGAACAAGAAGAGAAGCTATGCTCAGTACCATCTAGACTTGGGTCAGTCTGACTTTCTTCTGCACACTTGTTCCGCATGTGGCGTCATGTATGTGACTGGAGATGAAGAGGATGAGAAGGCTCACAAGGAATTTCACAATGACTATACCCGCGGAATACAATTCAAGGGTTGGTGCAATGAGAGGGTTGTTCATTCGCTTAAAGTGGGAGGAGGTCGGATTCTTTTGGTGTTGGATGGTGATCCTCCTGCTCAGAGGAACAAGGTTGAGAAAGTTGTGACAATGATGGAGACTGAGCTTGGCAGTGGGTGGATTCTGCCCAAGTTGTTTAAGGTGACTATCAATCACTCTTACTTGGTCCTATTAGAAACATGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000070 GO:0000278 GO:0000280 GO:0000724 GO:0000725 GO:0000819 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0007135 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009553 GO:0009790 GO:0009791 GO:0009793 GO:0009908 GO:0009956 GO:0009987 GO:0010154 GO:0016043 GO:0016407 GO:0016740 GO:0016746 GO:0016747 GO:0022402 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0034085 GO:0034089 GO:0034641 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0045132 GO:0045144 GO:0046483 GO:0048229 GO:0048285 GO:0048316 GO:0048364 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048589 GO:0048608 GO:0048609 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051177 GO:0051276 GO:0051321 GO:0051716 GO:0060771 GO:0060772 GO:0061458 GO:0061983 GO:0070192 GO:0071704 GO:0071840 GO:0080186 GO:0090304 GO:0090567 GO:0098813 GO:0099402 GO:0140013 GO:0140014 GO:1901360 GO:1903046 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_13 zf-C2H2_3

Protein Analysis

218

Amino Acids

24.43

Weight (kDa)

7.66

Isoelectric Point (pI)

49.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_3	PF13878	102 - 140	1.5e-15	zinc-finger of acetyl-transferase ESCO

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003898)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31400 AT4G31400
fragaria_vesca	FvH4_6g20270
malus_domestica	MD10G1054000.v1.1 MD12G1039800.v1.1 MD14G1038400.v1.1
prunus_persica	Prupe.7G095100_v2.0.a1
pyrus_communis	pycom01g00980 pycom12g03380
rosa_chinensis	RchiOBHm_Chr1g0331051 RchiOBHm_Chr3g0475861
rosa_laevigata	RLG00000001160 RLG00000023805 RLG00000029757
rosa_multiflora	Rmu_sc0000539.1_g000091 Rmu_sc0000539.1_g000092 Rmu_sc0002515.1_g000002
rosa_roxburghii	Rroxscaffold_3G00226030 Rroxscaffold_4G00319510 Rroxscaffold_6G00405780
rosa_rugosa	Rorug01G0093800 Rorug03G0151800 Rorug07G0290800
rosa_samantha	Rh1AG113600 Rh1CG110400 Rh1DG119200 Rh3AG201800 Rh3BG232300 Rh3CG226900 Rh3DG227400 Rh7BG417600 Rh7CG466100
rosa_wichuraiana	Rw1G009260 Rw3G018370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	179
AccI	GTMKAC	1 cut(s)	234
AccII	CGCG	1 cut(s)	432
AciI	CCGC	3 cut(s)	354, 430, 432
AclWI	GGATC	1 cut(s)	515
AcoI	YGGCCR	1 cut(s)	97
AcsI	RAATTY	1 cut(s)	410
AcyI	GRCGYC	1 cut(s)	363
AfaI	GTAC	1 cut(s)	308
AfiI	CCNNNNNNNGG	3 cut(s)	175, 176, 179
AgsI	TTSAA	2 cut(s)	28, 445
AjnI	CCWGG	1 cut(s)	99
AluBI	AGCT	3 cut(s)	161, 297, 577
AluI	AGCT	3 cut(s)	161, 297, 577
Alw21I	GWGCWC	1 cut(s)	163
Alw26I	GTCTC	1 cut(s)	563
AlwI	GGATC	1 cut(s)	515
AoxI	GGCC	1 cut(s)	97
ApoI	RAATTY	1 cut(s)	410
ArsI	GACNNNNNNTTYG	2 cut(s)	208, 240
AspS9I	GGNCC	1 cut(s)	637
AsuHPI	GGTGA	3 cut(s)	48, 530, 625
AvaII	GGWCC	1 cut(s)	637
BanII	GRGCYC	1 cut(s)	163
Bbv12I	GWGCWC	1 cut(s)	163
BccI	CCATC	3 cut(s)	318, 509, 559
BceAI	ACGGC	1 cut(s)	112
BciT130I	CCWGG	1 cut(s)	101
BcoDI	GTCTC	1 cut(s)	563
BfaI	CTAG	2 cut(s)	314, 655
Bme1390I	CCNGG	1 cut(s)	101
Bme18I	GGWCC	1 cut(s)	637
BmgT120I	GGNCC	1 cut(s)	637
BmrFI	CCNGG	1 cut(s)	101
BmsI	GCATC	1 cut(s)	120
BoxI	GACNNNNGTC	1 cut(s)	321
BpmI	CTGGAG	1 cut(s)	399
BsaBI	GATNNNNATC	1 cut(s)	519
BsaHI	GRCGYC	1 cut(s)	363
BsaJI	CCNNGG	2 cut(s)	173, 430
BsaXI	ACNNNNNCTCC	2 cut(s)	175, 205
Bsc4I	CCNNNNNNNGG	3 cut(s)	175, 176, 179
Bse1I	ACTGG	2 cut(s)	205, 382
Bse3DI	GCAATG	1 cut(s)	463
Bse8I	GATNNNNATC	1 cut(s)	519
BseBI	CCWGG	1 cut(s)	101
BseDI	CCNNGG	2 cut(s)	173, 430
BseGI	GGATG	3 cut(s)	235, 397, 520
BseJI	GATNNNNATC	1 cut(s)	519
BseLI	CCNNNNNNNGG	3 cut(s)	175, 176, 179
BseMI	GCAATG	1 cut(s)	463
BseMII	CTCAG	3 cut(s)	317, 545, 564
BseNI	ACTGG	2 cut(s)	205, 382
BseRI	GAGGAG	1 cut(s)	504
BsgI	GTGCAG	1 cut(s)	326
Bsh1236I	CGCG	1 cut(s)	432
BshFI	GGCC	1 cut(s)	99
BsiHKAI	GWGCWC	1 cut(s)	163
BslI	CCNNNNNNNGG	3 cut(s)	175, 176, 179
BsmAI	GTCTC	1 cut(s)	563
BsnI	GGCC	1 cut(s)	99
Bsp1286I	GDGCHC	1 cut(s)	163
Bsp143I	GATC	2 cut(s)	12, 520
BspACI	CCGC	3 cut(s)	354, 430, 432
BspANI	GGCC	1 cut(s)	99
BspCNI	CTCAG	3 cut(s)	316, 544, 565
BspFNI	CGCG	1 cut(s)	432
BspPI	GGATC	1 cut(s)	515
BspQI	GCTCTTC	1 cut(s)	151
BsrDI	GCAATG	1 cut(s)	463
BsrI	ACTGG	2 cut(s)	205, 382
BssECI	CCNNGG	2 cut(s)	173, 430
BssMI	GATC	2 cut(s)	12, 520
BssNI	GRCGYC	1 cut(s)	363
BssT1I	CCWWGG	1 cut(s)	173
Bst2UI	CCWGG	1 cut(s)	101
Bst4CI	ACNGT	2 cut(s)	259, 274
Bst6I	CTCTTC	4 cut(s)	40, 151, 284, 381
BstACI	GRCGYC	1 cut(s)	363
BstDEI	CTNAG	3 cut(s)	303, 531, 573
BstDSI	CCRYGG	1 cut(s)	430
BstF5I	GGATG	3 cut(s)	235, 397, 520
BstFNI	CGCG	1 cut(s)	432
BstKTI	GATC	2 cut(s)	15, 523
BstMAI	GTCTC	1 cut(s)	563
BstMBI	GATC	2 cut(s)	12, 520
BstNI	CCWGG	1 cut(s)	101
BstNSI	RCATGY	2 cut(s)	360, 654
BstPAI	GACNNNNGTC	1 cut(s)	321
BstSCI	CCNGG	1 cut(s)	99
BstUI	CGCG	1 cut(s)	432
BsuRI	GGCC	1 cut(s)	99
BtgI	CCRYGG	1 cut(s)	430
BtsCI	GGATG	3 cut(s)	235, 397, 520
BtsI	GCAGTG	1 cut(s)	589
BtsIMutI	CAGTG	3 cut(s)	22, 279, 589
Cfr13I	GGNCC	1 cut(s)	637
Cfr42I	CCGCGG	1 cut(s)	433
CseI	GACGC	1 cut(s)	352
Csp6I	GTAC	1 cut(s)	307
CviAII	CATG	3 cut(s)	357, 367, 651
CviJI	RGCY	6 cut(s)	99, 161, 247, 297, 401, 577
CviKI_1	RGCY	6 cut(s)	99, 161, 247, 297, 401, 577
CviQI	GTAC	1 cut(s)	307
DdeI	CTNAG	3 cut(s)	303, 531, 573
DpnI	GATC	2 cut(s)	14, 522
DpnII	GATC	2 cut(s)	12, 520
EaeI	YGGCCR	1 cut(s)	97
Eam1104I	CTCTTC	4 cut(s)	40, 151, 284, 381
EarI	CTCTTC	4 cut(s)	40, 151, 284, 381
Ecl136II	GAGCTC	1 cut(s)	161
Eco130I	CCWWGG	1 cut(s)	173
Eco24I	GRGCYC	1 cut(s)	163
Eco47I	GGWCC	1 cut(s)	637
Eco53kI	GAGCTC	1 cut(s)	161
EcoICRI	GAGCTC	1 cut(s)	161
EcoRII	CCWGG	1 cut(s)	99
EcoT14I	CCWWGG	1 cut(s)	173
EcoT38I	GRGCYC	1 cut(s)	163
ErhI	CCWWGG	1 cut(s)	173
FaeI	CATG	3 cut(s)	360, 370, 654
FaiI	YATR	6 cut(s)	300, 358, 368, 372, 426, 652
FatI	CATG	3 cut(s)	356, 366, 650
FauI	CCCGC	1 cut(s)	437
FblI	GTMKAC	1 cut(s)	234
FokI	GGATG	3 cut(s)	242, 404, 527
FriOI	GRGCYC	1 cut(s)	163
FspBI	CTAG	2 cut(s)	314, 655
GsuI	CTGGAG	1 cut(s)	399
HaeIII	GGCC	1 cut(s)	99
HgaI	GACGC	1 cut(s)	352
Hin1I	GRCGYC	1 cut(s)	363
Hin1II	CATG	3 cut(s)	360, 370, 654
HincII	GTYRAC	1 cut(s)	235
HindII	GTYRAC	1 cut(s)	235
HinfI	GANTC	4 cut(s)	236, 251, 499, 592
HphI	GGTGA	3 cut(s)	48, 530, 625
Hpy166II	GTNNAC	1 cut(s)	235
Hpy188I	TCNGA	4 cut(s)	229, 331, 498, 534
Hpy188III	TCNNGA	1 cut(s)	314
Hpy8I	GTNNAC	1 cut(s)	235
Hpy99I	CGWCG	3 cut(s)	92, 95, 98
HpyAV	CCTTC	2 cut(s)	31, 391
HpyCH4III	ACNGT	2 cut(s)	259, 274
HpyCH4V	TGCA	3 cut(s)	4, 343, 456
HpyF3I	CTNAG	3 cut(s)	303, 531, 573
Hsp92I	GRCGYC	1 cut(s)	363
Hsp92II	CATG	3 cut(s)	360, 370, 654
KspI	CCGCGG	1 cut(s)	433
Kzo9I	GATC	2 cut(s)	12, 520
LguI	GCTCTTC	1 cut(s)	151
LmnI	GCTCC	1 cut(s)	166
LpnPI	CCDG	8 cut(s)	78, 86, 100, 113, 218, 261, 363, 540
LweI	GCATC	1 cut(s)	120
MaeI	CTAG	2 cut(s)	314, 655
MaeIII	GTNAC	4 cut(s)	274, 373, 556, 613
MalI	GATC	2 cut(s)	14, 522
MboI	GATC	2 cut(s)	12, 520
MhlI	GDGCHC	1 cut(s)	163
MluCI	AATT	4 cut(s)	104, 137, 410, 440
MlyI	GAGTC	1 cut(s)	230
MmeI	TCCRAC	2 cut(s)	476, 492
MnlI	CCTC	8 cut(s)	43, 87, 382, 456, 482, 485, 528, 534
MseI	TTAA	2 cut(s)	480, 609
MslI	CAYNNNNRTG	1 cut(s)	371
MspA1I	CMGCKG	1 cut(s)	432
MspR9I	CCNGG	1 cut(s)	101
MvaI	CCWGG	1 cut(s)	101
MvnI	CGCG	1 cut(s)	432
NdeII	GATC	2 cut(s)	12, 520
NlaIII	CATG	3 cut(s)	360, 370, 654
NmuCI	GTSAC	4 cut(s)	274, 373, 556, 613
NspI	RCATGY	2 cut(s)	360, 654
PciSI	GCTCTTC	1 cut(s)	151
PfeI	GAWTC	3 cut(s)	251, 499, 592
PflMI	CCANNNNNTGG	1 cut(s)	179
PleI	GAGTC	1 cut(s)	230
PpsI	GAGTC	1 cut(s)	230
PshAI	GACNNNNGTC	1 cut(s)	321
Psp124BI	GAGCTC	1 cut(s)	163
Psp6I	CCWGG	1 cut(s)	99
PspGI	CCWGG	1 cut(s)	99
PspPI	GGNCC	1 cut(s)	637
RsaI	GTAC	1 cut(s)	308
RsaNI	GTAC	1 cut(s)	307
RseI	CAYNNNNRTG	1 cut(s)	371
SacI	GAGCTC	1 cut(s)	163
SacII	CCGCGG	1 cut(s)	433
SalI	GTCGAC	1 cut(s)	233
SapI	GCTCTTC	1 cut(s)	151
SaqAI	TTAA	2 cut(s)	480, 609
Sau3AI	GATC	2 cut(s)	12, 520
Sau96I	GGNCC	1 cut(s)	637
SchI	GAGTC	1 cut(s)	230
ScrFI	CCNGG	1 cut(s)	101
SduI	GDGCHC	1 cut(s)	163
SetI	ASST	8 cut(s)	79, 149, 163, 299, 496, 546, 579, 615
SfaNI	GCATC	1 cut(s)	120
Sfr303I	CCGCGG	1 cut(s)	433
SgrBI	CCGCGG	1 cut(s)	433
SinI	GGWCC	1 cut(s)	637
SmiMI	CAYNNNNRTG	1 cut(s)	371
Sse9I	AATT	4 cut(s)	104, 137, 410, 440
SsiI	CCGC	3 cut(s)	354, 430, 432
SspMI	CTAG	2 cut(s)	314, 655
SstI	GAGCTC	1 cut(s)	163
StyD4I	CCNGG	1 cut(s)	99
StyI	CCWWGG	1 cut(s)	173
TaaI	ACNGT	2 cut(s)	259, 274
TaqI	TCGA	3 cut(s)	87, 234, 254
TasI	AATT	4 cut(s)	104, 137, 410, 440
TfiI	GAWTC	3 cut(s)	251, 499, 592
Tru1I	TTAA	2 cut(s)	480, 609
Tru9I	TTAA	2 cut(s)	480, 609
TscAI	CASTG	3 cut(s)	22, 279, 589
TseFI	GTSAC	4 cut(s)	274, 373, 556, 613
Tsp45I	GTSAC	4 cut(s)	274, 373, 556, 613
TspDTI	ATGAA	2 cut(s)	399, 461
TspRI	CASTG	3 cut(s)	22, 279, 589
Van91I	CCANNNNNTGG	1 cut(s)	179
VpaK11BI	GGWCC	1 cut(s)	637
XapI	RAATTY	1 cut(s)	410
XbaI	TCTAGA	1 cut(s)	313
XceI	RCATGY	2 cut(s)	360, 654
XmiI	GTMKAC	1 cut(s)	234
XspI	CTAG	2 cut(s)	314, 655

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.