Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002515.1

Orthogroup ID

OG0003898

Physical Location & Seq

Genomic Coordinates Forward (+)

16447 .. 18611

Gene Structure 2165 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002515.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

atgcaatcaaagatcagtgccttgttcaaaccctcttcttcttcttcttctgtttcacccaaaccagcagacccacctcccattttcgacgacgacggccaggaattgagcatctgggaaaagaagcaacaccaacaattctccacctacaagcgaagagctccaaacccgccaaggggtgggagtgagtgtagttgggataaccagttggcaaagacacccatttcggatgtcgactctcccaagcctgaatcgacagtattgggaaagacagtgaccaagaacaagactcagtaccatctagacttgggtcagtctgactttcttctgcacacttgttccgcatgtggcgtcatgtatgtgactggagatgaagaggatgagaaggctcacaagggatttcacaatgactatacccgcggaatacaattcaagggttggtgcaatgagagggttgttcattcgcttaaagtgggaggagctcggattcttttggtcttggatggtgatcctcctgctcagaggaacaaggttgagaaagttgtgacaatgatggagactgagcttggcagtgggtggattctgcccaagttgtttaaggtgtatctgtttgttttgtccgcaagaattgtaggctgtctggttgccgaacctataacaaaagcacacaaagtcctatcttgtgcagttgatggaagctcaagtacggcaacaaagaaaacaaagttaactactctccagtttggggaaatcaaatttcacagggaagtcattagaaaagccccttctgctcctgaaccattgaatgagtgtttcactggtgctatcgtttgtgaaaaggaagcagtacccgctgtctgtggcattagagccatttgggtcactccagctaacagaagaaaacacatagccacccacttattggatgccctgaggaaaagtttctgcatgggatttgtccttgagcactctcagttggcattctctccactaacatcggctggaaacgcattggtatcaaattatattggcagtggacatttcttggtgtacaacacaaacaatgtggtctcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000070 GO:0000278 GO:0000280 GO:0000724 GO:0000725 GO:0000819 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0007135 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009553 GO:0009790 GO:0009791 GO:0009793 GO:0009908 GO:0009956 GO:0009987 GO:0010154 GO:0016043 GO:0016407 GO:0016740 GO:0016746 GO:0016747 GO:0022402 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0034085 GO:0034089 GO:0034641 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0045132 GO:0045144 GO:0046483 GO:0048229 GO:0048285 GO:0048316 GO:0048364 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048589 GO:0048608 GO:0048609 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051177 GO:0051276 GO:0051321 GO:0051716 GO:0060771 GO:0060772 GO:0061458 GO:0061983 GO:0070192 GO:0071704 GO:0071840 GO:0080186 GO:0090304 GO:0090567 GO:0098813 GO:0099402 GO:0140013 GO:0140014 GO:1901360 GO:1903046 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_13 zf-C2H2_3

Protein Analysis

358

Amino Acids

39.31

Weight (kDa)

8.89

Isoelectric Point (pI)

41.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003898)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31400 AT4G31400
fragaria_vesca	FvH4_6g20270
malus_domestica	MD10G1054000.v1.1 MD12G1039800.v1.1 MD14G1038400.v1.1
prunus_persica	Prupe.7G095100_v2.0.a1
pyrus_communis	pycom01g00980 pycom12g03380
rosa_chinensis	RchiOBHm_Chr1g0331051 RchiOBHm_Chr3g0475861
rosa_laevigata	RLG00000001160 RLG00000023805 RLG00000029757
rosa_multiflora	Rmu_sc0000539.1_g000091 Rmu_sc0000539.1_g000092 Rmu_sc0002515.1_g000002
rosa_roxburghii	Rroxscaffold_3G00226030 Rroxscaffold_4G00319510 Rroxscaffold_6G00405780
rosa_rugosa	Rorug01G0093800 Rorug03G0151800 Rorug07G0290800
rosa_samantha	Rh1AG113600 Rh1CG110400 Rh1DG119200 Rh3AG201800 Rh3BG232300 Rh3CG226900 Rh3DG227400 Rh7BG417600 Rh7CG466100
rosa_wichuraiana	Rw1G009260 Rw3G018370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	179, 922
AccI	GTMKAC	1 cut(s)	234
AccII	CGCG	1 cut(s)	420
AciI	CCGC	6 cut(s)	170, 342, 418, 420, 621, 852
AclWI	GGATC	1 cut(s)	503
AcoI	YGGCCR	1 cut(s)	97
AcsI	RAATTY	1 cut(s)	755
AcyI	GRCGYC	1 cut(s)	351
AfaI	GTAC	4 cut(s)	296, 706, 849, 1052
AfiI	CCNNNNNNNGG	5 cut(s)	175, 176, 179, 745, 922
AgsI	TTSAA	3 cut(s)	28, 433, 805
AjnI	CCWGG	1 cut(s)	99
AluBI	AGCT	5 cut(s)	161, 482, 565, 699, 890
AluI	AGCT	5 cut(s)	161, 482, 565, 699, 890
Alw21I	GWGCWC	3 cut(s)	163, 484, 969
Alw26I	GTCTC	1 cut(s)	551
AlwI	GGATC	1 cut(s)	503
AoxI	GGCC	1 cut(s)	97
ApoI	RAATTY	1 cut(s)	755
ArsI	GACNNNNNNTTYG	2 cut(s)	208, 240
Asp700I	GAANNNNTTC	1 cut(s)	941
AsuHPI	GGTGA	2 cut(s)	48, 518
AxyI	CCTNAGG	1 cut(s)	932
BanII	GRGCYC	2 cut(s)	163, 484
BarI	GAAGNNNNNNTAC	2 cut(s)	688, 720
Bbv12I	GWGCWC	3 cut(s)	163, 484, 969
BccI	CCATC	4 cut(s)	306, 497, 547, 686
BceAI	ACGGC	2 cut(s)	112, 723
BciT130I	CCWGG	1 cut(s)	101
BcoDI	GTCTC	1 cut(s)	551
BfaI	CTAG	1 cut(s)	302
Bme1390I	CCNGG	1 cut(s)	101
BmrFI	CCNGG	1 cut(s)	101
BmsI	GCATC	2 cut(s)	120, 916
BoxI	GACNNNNGTC	1 cut(s)	309
BpmI	CTGGAG	3 cut(s)	387, 722, 870
BpuEI	CTTGAG	2 cut(s)	685, 983
BsaBI	GATNNNNATC	1 cut(s)	507
BsaHI	GRCGYC	1 cut(s)	351
BsaJI	CCNNGG	2 cut(s)	173, 418
BsaXI	ACNNNNNCTCC	2 cut(s)	175, 205
Bsc4I	CCNNNNNNNGG	5 cut(s)	175, 176, 179, 745, 922
Bse1I	ACTGG	4 cut(s)	205, 370, 739, 823
Bse21I	CCTNAGG	1 cut(s)	932
Bse3DI	GCAATG	1 cut(s)	451
Bse8I	GATNNNNATC	1 cut(s)	507
BseBI	CCWGG	1 cut(s)	101
BseDI	CCNNGG	2 cut(s)	173, 418
BseGI	GGATG	4 cut(s)	235, 385, 508, 931
BseJI	GATNNNNATC	1 cut(s)	507
BseLI	CCNNNNNNNGG	5 cut(s)	175, 176, 179, 745, 922
BseMI	GCAATG	1 cut(s)	451
BseMII	CTCAG	5 cut(s)	305, 533, 552, 923, 986
BseNI	ACTGG	4 cut(s)	205, 370, 739, 823
BseRI	GAGGAG	1 cut(s)	492
BsgI	GTGCAG	2 cut(s)	314, 705
Bsh1236I	CGCG	1 cut(s)	420
BshFI	GGCC	1 cut(s)	99
BsiHKAI	GWGCWC	3 cut(s)	163, 484, 969
BslI	CCNNNNNNNGG	5 cut(s)	175, 176, 179, 745, 922
BsmAI	GTCTC	1 cut(s)	551
BsmI	GAATGC	1 cut(s)	980
BsnI	GGCC	1 cut(s)	99
Bsp1286I	GDGCHC	3 cut(s)	163, 484, 969
Bsp1407I	TGTACA	1 cut(s)	1050
Bsp143I	GATC	2 cut(s)	12, 508
BspACI	CCGC	6 cut(s)	170, 342, 418, 420, 621, 852
BspANI	GGCC	1 cut(s)	99
BspCNI	CTCAG	5 cut(s)	304, 532, 553, 924, 985
BspFNI	CGCG	1 cut(s)	420
BspPI	GGATC	1 cut(s)	503
BspQI	GCTCTTC	1 cut(s)	151
BsrDI	GCAATG	1 cut(s)	451
BsrGI	TGTACA	1 cut(s)	1050
BsrI	ACTGG	4 cut(s)	205, 370, 739, 823
BssECI	CCNNGG	2 cut(s)	173, 418
BssMI	GATC	2 cut(s)	12, 508
BssNI	GRCGYC	1 cut(s)	351
BssT1I	CCWWGG	1 cut(s)	173
Bst2UI	CCWGG	1 cut(s)	101
Bst4CI	ACNGT	2 cut(s)	259, 274
Bst6I	CTCTTC	3 cut(s)	40, 151, 369
BstACI	GRCGYC	1 cut(s)	351
BstAUI	TGTACA	1 cut(s)	1050
BstDEI	CTNAG	5 cut(s)	291, 519, 561, 932, 972
BstDSI	CCRYGG	1 cut(s)	418
BstF5I	GGATG	4 cut(s)	235, 385, 508, 931
BstFNI	CGCG	1 cut(s)	420
BstKTI	GATC	2 cut(s)	15, 511
BstMAI	GTCTC	1 cut(s)	551
BstMBI	GATC	2 cut(s)	12, 508
BstMWI	GCNNNNNNNGC	3 cut(s)	788, 851, 1007
BstNI	CCWGG	1 cut(s)	101
BstNSI	RCATGY	1 cut(s)	348
BstPAI	GACNNNNGTC	1 cut(s)	309
BstSCI	CCNGG	1 cut(s)	99
BstUI	CGCG	1 cut(s)	420
Bsu36I	CCTNAGG	1 cut(s)	932
BsuRI	GGCC	1 cut(s)	99
BtgI	CCRYGG	1 cut(s)	418
BtsCI	GGATG	4 cut(s)	235, 385, 508, 931
BtsI	GCAGTG	2 cut(s)	577, 1039
BtsIMutI	CAGTG	5 cut(s)	22, 279, 577, 816, 1039
Cfr42I	CCGCGG	1 cut(s)	421
CseI	GACGC	1 cut(s)	340
Csp6I	GTAC	4 cut(s)	295, 705, 848, 1051
CspCI	CAANNNNNGTGG	1 cut(s)	1047
CviAII	CATG	3 cut(s)	345, 355, 949
CviQI	GTAC	4 cut(s)	295, 705, 848, 1051
DdeI	CTNAG	5 cut(s)	291, 519, 561, 932, 972
DpnI	GATC	2 cut(s)	14, 510
DpnII	GATC	2 cut(s)	12, 508
EaeI	YGGCCR	1 cut(s)	97
Eam1104I	CTCTTC	3 cut(s)	40, 151, 369
EarI	CTCTTC	3 cut(s)	40, 151, 369
Ecl136II	GAGCTC	2 cut(s)	161, 482
Eco130I	CCWWGG	1 cut(s)	173
Eco24I	GRGCYC	2 cut(s)	163, 484
Eco53kI	GAGCTC	2 cut(s)	161, 482
Eco81I	CCTNAGG	1 cut(s)	932
EcoICRI	GAGCTC	2 cut(s)	161, 482
EcoRII	CCWGG	1 cut(s)	99
EcoT14I	CCWWGG	1 cut(s)	173
EcoT38I	GRGCYC	2 cut(s)	163, 484
ErhI	CCWWGG	1 cut(s)	173
FaeI	CATG	3 cut(s)	348, 358, 952
FaiI	YATR	9 cut(s)	346, 356, 360, 414, 656, 908, 950, 1026, 1075
FatI	CATG	3 cut(s)	344, 354, 948
FauI	CCCGC	3 cut(s)	177, 425, 859
FblI	GTMKAC	1 cut(s)	234
FokI	GGATG	4 cut(s)	242, 392, 515, 938
FriOI	GRGCYC	2 cut(s)	163, 484
FspBI	CTAG	1 cut(s)	302
GsuI	CTGGAG	3 cut(s)	387, 722, 870
HaeIII	GGCC	1 cut(s)	99
HgaI	GACGC	1 cut(s)	340
Hin1I	GRCGYC	1 cut(s)	351
Hin1II	CATG	3 cut(s)	348, 358, 952
HincII	GTYRAC	2 cut(s)	235, 729
HindII	GTYRAC	2 cut(s)	235, 729
HinfI	GANTC	5 cut(s)	236, 251, 289, 487, 580
HpaI	GTTAAC	1 cut(s)	729
HphI	GGTGA	2 cut(s)	48, 518
Hpy166II	GTNNAC	4 cut(s)	235, 729, 1037, 1051
Hpy188I	TCNGA	4 cut(s)	229, 319, 486, 522
Hpy188III	TCNNGA	2 cut(s)	302, 794
Hpy8I	GTNNAC	4 cut(s)	235, 729, 1037, 1051
Hpy99I	CGWCG	3 cut(s)	92, 95, 98
HpyAV	CCTTC	2 cut(s)	379, 795
HpyCH4III	ACNGT	2 cut(s)	259, 274
HpyCH4V	TGCA	5 cut(s)	4, 331, 444, 686, 948
HpyF10VI	GCNNNNNNNGC	3 cut(s)	788, 851, 1007
HpyF3I	CTNAG	5 cut(s)	291, 519, 561, 932, 972
Hsp92I	GRCGYC	1 cut(s)	351
Hsp92II	CATG	3 cut(s)	348, 358, 952
KspAI	GTTAAC	1 cut(s)	729
KspI	CCGCGG	1 cut(s)	421
Kzo9I	GATC	2 cut(s)	12, 508
LguI	GCTCTTC	1 cut(s)	151
LmnI	GCTCC	3 cut(s)	166, 479, 796
LweI	GCATC	2 cut(s)	120, 916
MaeI	CTAG	1 cut(s)	302
MaeIII	GTNAC	4 cut(s)	274, 361, 544, 880
MalI	GATC	2 cut(s)	14, 510
MboI	GATC	2 cut(s)	12, 508
MboII	GAAGA	9 cut(s)	27, 30, 33, 36, 39, 168, 317, 386, 909
MhlI	GDGCHC	3 cut(s)	163, 484, 969
MluCI	AATT	6 cut(s)	104, 137, 428, 627, 755, 1021
MlyI	GAGTC	2 cut(s)	230, 283
MnlI	CCTC	8 cut(s)	43, 87, 370, 444, 470, 516, 522, 927
MroXI	GAANNNNTTC	1 cut(s)	941
MseI	TTAA	3 cut(s)	468, 597, 728
MslI	CAYNNNNRTG	1 cut(s)	359
MspA1I	CMGCKG	2 cut(s)	420, 854
MspR9I	CCNGG	1 cut(s)	101
Mva1269I	GAATGC	1 cut(s)	980
MvaI	CCWGG	1 cut(s)	101
MvnI	CGCG	1 cut(s)	420
MwoI	GCNNNNNNNGC	3 cut(s)	788, 851, 1007
NdeII	GATC	2 cut(s)	12, 508
NlaIII	CATG	3 cut(s)	348, 358, 952
NmuCI	GTSAC	4 cut(s)	274, 361, 544, 880
NspI	RCATGY	1 cut(s)	348
PciSI	GCTCTTC	1 cut(s)	151
PctI	GAATGC	1 cut(s)	980
PdmI	GAANNNNTTC	1 cut(s)	941
PfeI	GAWTC	3 cut(s)	251, 487, 580
PflMI	CCANNNNNTGG	2 cut(s)	179, 922
PleI	GAGTC	2 cut(s)	230, 283
PpsI	GAGTC	2 cut(s)	230, 283
PshAI	GACNNNNGTC	1 cut(s)	309
Psp124BI	GAGCTC	2 cut(s)	163, 484
Psp6I	CCWGG	1 cut(s)	99
PspGI	CCWGG	1 cut(s)	99
RsaI	GTAC	4 cut(s)	296, 706, 849, 1052
RsaNI	GTAC	4 cut(s)	295, 705, 848, 1051
RseI	CAYNNNNRTG	1 cut(s)	359
SacI	GAGCTC	2 cut(s)	163, 484
SacII	CCGCGG	1 cut(s)	421
SalI	GTCGAC	1 cut(s)	233
SapI	GCTCTTC	1 cut(s)	151
SaqAI	TTAA	3 cut(s)	468, 597, 728
Sau3AI	GATC	2 cut(s)	12, 508
SchI	GAGTC	2 cut(s)	230, 283
ScrFI	CCNGG	1 cut(s)	101
SduI	GDGCHC	3 cut(s)	163, 484, 969
SfaNI	GCATC	2 cut(s)	120, 916
Sfr303I	CCGCGG	1 cut(s)	421
SgrBI	CCGCGG	1 cut(s)	421
SmiMI	CAYNNNNRTG	1 cut(s)	359
SmlI	CTYRAG	2 cut(s)	700, 962
SmoI	CTYRAG	2 cut(s)	700, 962
Sse9I	AATT	6 cut(s)	104, 137, 428, 627, 755, 1021
SsiI	CCGC	6 cut(s)	170, 342, 418, 420, 621, 852
SspMI	CTAG	1 cut(s)	302
SstI	GAGCTC	2 cut(s)	163, 484
StyD4I	CCNGG	1 cut(s)	99
StyI	CCWWGG	1 cut(s)	173
TaaI	ACNGT	2 cut(s)	259, 274
TaqI	TCGA	3 cut(s)	87, 234, 254
TasI	AATT	6 cut(s)	104, 137, 428, 627, 755, 1021
TatI	WGTACW	1 cut(s)	1050
TfiI	GAWTC	3 cut(s)	251, 487, 580
Tru1I	TTAA	3 cut(s)	468, 597, 728
Tru9I	TTAA	3 cut(s)	468, 597, 728
TscAI	CASTG	5 cut(s)	22, 279, 577, 823, 1039
TseFI	GTSAC	4 cut(s)	274, 361, 544, 880
Tsp45I	GTSAC	4 cut(s)	274, 361, 544, 880
TspDTI	ATGAA	2 cut(s)	387, 449
TspRI	CASTG	5 cut(s)	22, 279, 577, 823, 1039
Van91I	CCANNNNNTGG	2 cut(s)	179, 922
XapI	RAATTY	1 cut(s)	755
XbaI	TCTAGA	1 cut(s)	301
XceI	RCATGY	1 cut(s)	348
XcmI	CCANNNNNNNNNTGG	1 cut(s)	919
XmiI	GTMKAC	1 cut(s)	234
XmnI	GAANNNNTTC	1 cut(s)	941
XspI	CTAG	1 cut(s)	302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.