Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0003898

Physical Location & Seq

Genomic Coordinates Reverse (-)

3498220 .. 3501216

Gene Structure 2997 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1038400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGCAATCAAAGATCAGTGCCTTCTTCAAACCCTCCTCCTCCTATTCTTCTTCTTCTTCACCCAAACCAGCAGCCCCACCTCCGATTGTTACCGGCGGAAACGACGACGAATTGACCGTCTGGGAAAAGACGCAGCACCAATACTGCAACACCTATAAGCGAAGAGCTCCAAACCCGCAAAGTGGAAGGGACAAAAGTTCAGTTCAATTGCCGGAGAAACCCATTTCGGATGATAATTCCAGGAAGCCGGAATCGACCACATTGGGAAGAACAGTGATCAAGAACAAGAAGAGAAGCTATGCTCAGTTCTATTTAGACTTTGGTCAGTCTGATTTCAATTTGCACACGTGCTCCACGTGCGGGGTCAAGTATACCGCCGGAGACGAAGGCGATGAGAAGGCTCACAAGGCATTTCACAAGGACTATACCAATGGAATTCCATTCAAGGGATGGTGCAATGAGAGGGTTGTTCATCTGCCTTCTGTTGAAGGAGGTCGGATTGTTTTGGTGTTAGATTCTGATCCTCCGGCGCAGAGAAACAAGGTCGGGGAAGTTGTGAAAAGGATGGAGACTGAGCTTGGAAATGGATGGATTTTGCACAAGTTGTGTAAGGTATATCTGTACATTTTGTCTCAAAGGGTTGCTGGATGTCTAGTTGCGGAACCAATAAAAGAAGCACACAAAGTGCCTTCATGTGCAGTCGATGGAAGTTCTGATGGTACTACTACGCATGAAGCTAAATTATCTACTCTCCAATTTGGGGATATCAGGTTTCAGAGGGAAGTCAGGAAAAAAGCCCATTTTGCACCCGAAGCATTGAATGAGAATCTCAATGGCGCTCTATTCTGCGAAAGGGAAGCAGTGCCTGCTGTCTGCGGCGTTAGAGCTATTTGGGTCACTCCATCTAACAGAAGAAAACACATAGCCACCCAGTTATTGGATACCCTGAGGAAAAGTTTCTGCATGGGATTTGTCCTCGAACGCTCTCAACTGGCATTCTCTCAACCAACATCGGCTGGAAAGGCATTGGCGTCCAATTATATTGGTGGTGGTGGATATTTTCTGGTGTACAAAACCAACCATATTGTCCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000070 GO:0000278 GO:0000280 GO:0000724 GO:0000725 GO:0000819 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0007135 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009553 GO:0009790 GO:0009791 GO:0009793 GO:0009908 GO:0009956 GO:0009987 GO:0010154 GO:0016043 GO:0016407 GO:0016740 GO:0016746 GO:0016747 GO:0022402 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0034085 GO:0034089 GO:0034641 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0045132 GO:0045144 GO:0046483 GO:0048229 GO:0048285 GO:0048316 GO:0048364 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048589 GO:0048608 GO:0048609 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051177 GO:0051276 GO:0051321 GO:0051716 GO:0060771 GO:0060772 GO:0061458 GO:0061983 GO:0070192 GO:0071704 GO:0071840 GO:0080186 GO:0090304 GO:0090567 GO:0098813 GO:0099402 GO:0140013 GO:0140014 GO:1901360 GO:1903046 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_13 zf-C2H2_3

Protein Analysis

365

Amino Acids

40.28

Weight (kDa)

9.21

Isoelectric Point (pI)

44.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_3	PF13878	102 - 140	2.8e-15	zinc-finger of acetyl-transferase ESCO
Acetyltransf_13	PF13880	288 - 357	2.4e-28	ESCO1/2 acetyl-transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003898)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31400 AT4G31400
fragaria_vesca	FvH4_6g20270
malus_domestica	MD10G1054000.v1.1 MD12G1039800.v1.1 MD14G1038400.v1.1
prunus_persica	Prupe.7G095100_v2.0.a1
pyrus_communis	pycom01g00980 pycom12g03380
rosa_chinensis	RchiOBHm_Chr1g0331051 RchiOBHm_Chr3g0475861
rosa_laevigata	RLG00000001160 RLG00000023805 RLG00000029757
rosa_multiflora	Rmu_sc0000539.1_g000091 Rmu_sc0000539.1_g000092 Rmu_sc0002515.1_g000002
rosa_roxburghii	Rroxscaffold_3G00226030 Rroxscaffold_4G00319510 Rroxscaffold_6G00405780
rosa_rugosa	Rorug01G0093800 Rorug03G0151800 Rorug07G0290800
rosa_samantha	Rh1AG113600 Rh1CG110400 Rh1DG119200 Rh3AG201800 Rh3BG232300 Rh3CG226900 Rh3DG227400 Rh7BG417600 Rh7CG466100
rosa_wichuraiana	Rw1G009260 Rw3G018370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	937
AccI	GTMKAC	1 cut(s)	371
AciI	CCGC	6 cut(s)	96, 176, 360, 375, 659, 876
AclWI	GGATC	1 cut(s)	515
AcsI	RAATTY	1 cut(s)	435
AcvI	CACGTG	2 cut(s)	348, 357
AcyI	GRCGYC	1 cut(s)	1031
AdeI	CACNNNGTG	1 cut(s)	685
AfaI	GTAC	3 cut(s)	623, 721, 1070
AfiI	CCNNNNNNNGG	5 cut(s)	182, 360, 446, 760, 937
AflIII	ACRYGT	1 cut(s)	345
AgsI	TTSAA	6 cut(s)	28, 206, 337, 445, 488, 820
AjnI	CCWGG	1 cut(s)	239
AluBI	AGCT	5 cut(s)	167, 297, 577, 737, 887
AluI	AGCT	5 cut(s)	167, 297, 577, 737, 887
Alw21I	GWGCWC	2 cut(s)	169, 353
Alw26I	GTCTC	3 cut(s)	375, 563, 636
AlwI	GGATC	1 cut(s)	515
AlwNI	CAGNNNCTG	1 cut(s)	866
ApeKI	GCWGC	2 cut(s)	71, 133
ApoI	RAATTY	1 cut(s)	435
ArsI	GACNNNNNNTTYG	2 cut(s)	102, 134
Asp700I	GAANNNNTTC	1 cut(s)	956
AspLEI	GCGC	2 cut(s)	532, 839
AsuHPI	GGTGA	1 cut(s)	51
AxyI	CCTNAGG	1 cut(s)	947
BanII	GRGCYC	1 cut(s)	169
BbrPI	CACGTG	2 cut(s)	348, 357
Bbv12I	GWGCWC	2 cut(s)	169, 353
BbvI	GCAGC	2 cut(s)	83, 145
BccI	CCATC	6 cut(s)	444, 559, 582, 698, 710, 910
BciT130I	CCWGG	1 cut(s)	241
BciVI	GTATCC	1 cut(s)	934
BclI	TGATCA	1 cut(s)	276
BcoDI	GTCTC	3 cut(s)	375, 563, 636
BfaI	CTAG	1 cut(s)	653
BfoI	RGCGCY	1 cut(s)	840
BfuI	GTATCC	1 cut(s)	934
BisI	GCNGC	3 cut(s)	72, 134, 877
BlsI	GCNGC	3 cut(s)	73, 135, 878
Bme1390I	CCNGG	1 cut(s)	241
BmiI	GGNNCC	1 cut(s)	663
BmrFI	CCNGG	1 cut(s)	241
BmrI	ACTGGG	1 cut(s)	925
BmuI	ACTGGG	1 cut(s)	925
BoxI	GACNNNNGTC	1 cut(s)	321
BsaAI	YACGTR	2 cut(s)	348, 357
BsaBI	GATNNNNATC	1 cut(s)	519
BsaHI	GRCGYC	1 cut(s)	1031
BsaXI	ACNNNNNCTCC	2 cut(s)	335, 365
Bsc4I	CCNNNNNNNGG	5 cut(s)	182, 360, 446, 760, 937
Bse118I	RCCGGY	1 cut(s)	92
Bse1I	ACTGG	2 cut(s)	931, 996
Bse21I	CCTNAGG	1 cut(s)	947
Bse3DI	GCAATG	1 cut(s)	463
Bse8I	GATNNNNATC	1 cut(s)	519
BseBI	CCWGG	1 cut(s)	241
BseGI	GGATG	5 cut(s)	235, 455, 570, 593, 653
BseJI	GATNNNNATC	1 cut(s)	519
BseLI	CCNNNNNNNGG	5 cut(s)	182, 360, 446, 760, 937
BseMI	GCAATG	1 cut(s)	463
BseMII	CTCAG	3 cut(s)	317, 564, 938
BseNI	ACTGG	2 cut(s)	931, 996
BseRI	GAGGAG	2 cut(s)	25, 28
BseXI	GCAGC	2 cut(s)	83, 145
BsgI	GTGCAG	1 cut(s)	717
BsiHKAI	GWGCWC	2 cut(s)	169, 353
BsiSI	CCGG	5 cut(s)	93, 212, 248, 378, 527
BslFI	GGGAC	2 cut(s)	203, 1073
BslI	CCNNNNNNNGG	5 cut(s)	182, 360, 446, 760, 937
BsmAI	GTCTC	3 cut(s)	375, 563, 636
BsmBI	CGTCTC	1 cut(s)	375
BsmFI	GGGAC	2 cut(s)	203, 1073
BsmI	GAATGC	1 cut(s)	995
Bsp1286I	GDGCHC	2 cut(s)	169, 353
Bsp1407I	TGTACA	2 cut(s)	621, 1068
Bsp143I	GATC	3 cut(s)	12, 276, 520
BspACI	CCGC	6 cut(s)	96, 176, 360, 375, 659, 876
BspCNI	CTCAG	3 cut(s)	316, 565, 939
BspLI	GGNNCC	1 cut(s)	663
BspPI	GGATC	1 cut(s)	515
BspQI	GCTCTTC	1 cut(s)	157
BsrDI	GCAATG	1 cut(s)	463
BsrFI	RCCGGY	1 cut(s)	92
BsrGI	TGTACA	2 cut(s)	621, 1068
BsrI	ACTGG	2 cut(s)	931, 996
BssAI	RCCGGY	1 cut(s)	92
BssMI	GATC	3 cut(s)	12, 276, 520
BssNAI	GTATAC	1 cut(s)	372
BssNI	GRCGYC	1 cut(s)	1031
Bst1107I	GTATAC	1 cut(s)	372
Bst2UI	CCWGG	1 cut(s)	241
Bst4CI	ACNGT	2 cut(s)	118, 274
Bst6I	CTCTTC	2 cut(s)	157, 284
BstACI	GRCGYC	1 cut(s)	1031
BstAPI	GCANNNNNTGC	1 cut(s)	866
BstAUI	TGTACA	2 cut(s)	621, 1068
BstBAI	YACGTR	2 cut(s)	348, 357
BstC8I	GCNNGC	1 cut(s)	867
BstDEI	CTNAG	3 cut(s)	303, 573, 947
BstF5I	GGATG	5 cut(s)	235, 455, 570, 593, 653
BstH2I	RGCGCY	1 cut(s)	840
BstHHI	GCGC	2 cut(s)	532, 839
BstKTI	GATC	3 cut(s)	15, 279, 523
BstMAI	GTCTC	3 cut(s)	375, 563, 636
BstMBI	GATC	3 cut(s)	12, 276, 520
BstMWI	GCNNNNNNNGC	6 cut(s)	357, 407, 803, 812, 866, 1022
BstNI	CCWGG	1 cut(s)	241
BstPAI	GACNNNNGTC	1 cut(s)	321
BstSCI	CCNGG	1 cut(s)	239
BstV1I	GCAGC	2 cut(s)	83, 145
BstZ17I	GTATAC	1 cut(s)	372
Bsu36I	CCTNAGG	1 cut(s)	947
BsuI	GTATCC	1 cut(s)	934
BtgZI	GCGATG	1 cut(s)	405
BtsCI	GGATG	5 cut(s)	235, 455, 570, 593, 653
BtsI	GCAGTG	1 cut(s)	867
BtsIMutI	CAGTG	3 cut(s)	22, 279, 867
Cac8I	GCNNGC	1 cut(s)	867
CaiI	CAGNNNCTG	1 cut(s)	866
CfoI	GCGC	2 cut(s)	532, 839
Cfr10I	RCCGGY	1 cut(s)	92
CseI	GACGC	2 cut(s)	139, 1020
Csp6I	GTAC	3 cut(s)	622, 720, 1069
CviAII	CATG	4 cut(s)	693, 731, 964, 1092
CviQI	GTAC	3 cut(s)	622, 720, 1069
DdeI	CTNAG	3 cut(s)	303, 573, 947
DpnI	GATC	3 cut(s)	14, 278, 522
DpnII	GATC	3 cut(s)	12, 276, 520
DraIII	CACNNNGTG	1 cut(s)	685
Eam1104I	CTCTTC	2 cut(s)	157, 284
EarI	CTCTTC	2 cut(s)	157, 284
EciI	GGCGGA	1 cut(s)	111
Ecl136II	GAGCTC	1 cut(s)	167
Eco24I	GRGCYC	1 cut(s)	169
Eco32I	GATATC	1 cut(s)	766
Eco53kI	GAGCTC	1 cut(s)	167
Eco72I	CACGTG	2 cut(s)	348, 357
Eco81I	CCTNAGG	1 cut(s)	947
EcoICRI	GAGCTC	1 cut(s)	167
EcoRI	GAATTC	1 cut(s)	435
EcoRII	CCWGG	1 cut(s)	239
EcoRV	GATATC	1 cut(s)	766
EcoT38I	GRGCYC	1 cut(s)	169
Esp3I	CGTCTC	1 cut(s)	375
FaeI	CATG	4 cut(s)	696, 734, 967, 1095
FaqI	GGGAC	2 cut(s)	203, 1073
FatI	CATG	4 cut(s)	692, 730, 963, 1091
FauI	CCCGC	2 cut(s)	183, 353
FbaI	TGATCA	1 cut(s)	276
FblI	GTMKAC	1 cut(s)	371
Fnu4HI	GCNGC	3 cut(s)	72, 134, 877
FokI	GGATG	5 cut(s)	242, 462, 577, 600, 660
FriOI	GRGCYC	1 cut(s)	169
Fsp4HI	GCNGC	3 cut(s)	72, 134, 877
FspBI	CTAG	1 cut(s)	653
GlaI	GCGC	2 cut(s)	531, 838
GluI	GCNGC	3 cut(s)	72, 134, 877
HaeII	RGCGCY	1 cut(s)	840
HapII	CCGG	5 cut(s)	93, 212, 248, 378, 527
HgaI	GACGC	2 cut(s)	139, 1020
HhaI	GCGC	2 cut(s)	532, 839
Hin1I	GRCGYC	1 cut(s)	1031
Hin1II	CATG	4 cut(s)	696, 734, 967, 1095
Hin6I	GCGC	2 cut(s)	530, 837
HinP1I	GCGC	2 cut(s)	530, 837
HinfI	GANTC	3 cut(s)	251, 515, 826
HpaII	CCGG	5 cut(s)	93, 212, 248, 378, 527
HphI	GGTGA	1 cut(s)	51
Hpy166II	GTNNAC	2 cut(s)	372, 1069
Hpy188I	TCNGA	7 cut(s)	84, 229, 331, 498, 520, 715, 777
Hpy188III	TCNNGA	2 cut(s)	280, 787
Hpy8I	GTNNAC	2 cut(s)	372, 1069
Hpy99I	CGWCG	2 cut(s)	107, 110
HpyAV	CCTTC	7 cut(s)	31, 180, 380, 391, 482, 489, 699
HpyCH4III	ACNGT	2 cut(s)	118, 274
HpyCH4IV	ACGT	2 cut(s)	347, 356
HpyCH4V	TGCA	8 cut(s)	4, 147, 343, 456, 598, 698, 806, 963
HpyF10VI	GCNNNNNNNGC	6 cut(s)	357, 407, 803, 812, 866, 1022
HpyF3I	CTNAG	3 cut(s)	303, 573, 947
HpySE526I	ACGT	2 cut(s)	347, 356
Hsp92I	GRCGYC	1 cut(s)	1031
Hsp92II	CATG	4 cut(s)	696, 734, 967, 1095
HspAI	GCGC	2 cut(s)	530, 837
Ksp22I	TGATCA	1 cut(s)	276
Kzo9I	GATC	3 cut(s)	12, 276, 520
LguI	GCTCTTC	1 cut(s)	157
LmnI	GCTCC	2 cut(s)	172, 356
Lsp1109I	GCAGC	2 cut(s)	83, 145
MaeI	CTAG	1 cut(s)	653
MaeII	ACGT	2 cut(s)	347, 356
MaeIII	GTNAC	2 cut(s)	88, 895
MalI	GATC	3 cut(s)	14, 278, 522
MboI	GATC	3 cut(s)	12, 276, 520
MboII	GAAGA	9 cut(s)	16, 39, 42, 45, 48, 174, 279, 301, 924
MfeI	CAATTG	1 cut(s)	206
MhlI	GDGCHC	2 cut(s)	169, 353
MluCI	AATT	8 cut(s)	110, 206, 235, 337, 435, 740, 755, 1036
MmeI	TCCRAC	1 cut(s)	476
MroXI	GAANNNNTTC	1 cut(s)	956
MspI	CCGG	5 cut(s)	93, 212, 248, 378, 527
MspR9I	CCNGG	1 cut(s)	241
MunI	CAATTG	1 cut(s)	206
Mva1269I	GAATGC	1 cut(s)	995
MvaI	CCWGG	1 cut(s)	241
MwoI	GCNNNNNNNGC	6 cut(s)	357, 407, 803, 812, 866, 1022
NdeII	GATC	3 cut(s)	12, 276, 520
NlaIII	CATG	4 cut(s)	696, 734, 967, 1095
NlaIV	GGNNCC	1 cut(s)	663
NmuCI	GTSAC	1 cut(s)	895
PciSI	GCTCTTC	1 cut(s)	157
PcsI	WCGNNNNNNNCGW	2 cut(s)	114, 353
PctI	GAATGC	1 cut(s)	995
PdmI	GAANNNNTTC	1 cut(s)	956
PfeI	GAWTC	3 cut(s)	251, 515, 826
PflMI	CCANNNNNTGG	1 cut(s)	937
PfoI	TCCNGGA	1 cut(s)	239
PkrI	GCNGC	3 cut(s)	73, 135, 878
PmaCI	CACGTG	2 cut(s)	348, 357
PmlI	CACGTG	2 cut(s)	348, 357
Ppu21I	YACGTR	2 cut(s)	348, 357
PshAI	GACNNNNGTC	1 cut(s)	321
Psp124BI	GAGCTC	1 cut(s)	169
Psp6I	CCWGG	1 cut(s)	239
PspCI	CACGTG	2 cut(s)	348, 357
PspGI	CCWGG	1 cut(s)	239
PspN4I	GGNNCC	1 cut(s)	663
PstNI	CAGNNNCTG	1 cut(s)	866
RsaI	GTAC	3 cut(s)	623, 721, 1070
RsaNI	GTAC	3 cut(s)	622, 720, 1069
SacI	GAGCTC	1 cut(s)	169
SapI	GCTCTTC	1 cut(s)	157
SatI	GCNGC	3 cut(s)	72, 134, 877
Sau3AI	GATC	3 cut(s)	12, 276, 520
ScrFI	CCNGG	1 cut(s)	241
SduI	GDGCHC	2 cut(s)	169, 353
Sse9I	AATT	8 cut(s)	110, 206, 235, 337, 435, 740, 755, 1036
SsiI	CCGC	6 cut(s)	96, 176, 360, 375, 659, 876
SspMI	CTAG	1 cut(s)	653
SstI	GAGCTC	1 cut(s)	169
StyD4I	CCNGG	1 cut(s)	239
TaaI	ACNGT	2 cut(s)	118, 274
TaiI	ACGT	2 cut(s)	350, 359
TaqI	TCGA	3 cut(s)	254, 702, 978
TasI	AATT	8 cut(s)	110, 206, 235, 337, 435, 740, 755, 1036
TatI	WGTACW	2 cut(s)	621, 1068
TauI	GCSGC	1 cut(s)	879
TfiI	GAWTC	3 cut(s)	251, 515, 826
TscAI	CASTG	3 cut(s)	22, 279, 867
TseFI	GTSAC	1 cut(s)	895
TseI	GCWGC	2 cut(s)	71, 133
Tsp45I	GTSAC	1 cut(s)	895
TspDTI	ATGAA	3 cut(s)	461, 681, 747
TspRI	CASTG	3 cut(s)	22, 279, 867
Van91I	CCANNNNNTGG	1 cut(s)	937
XapI	RAATTY	1 cut(s)	435
XcmI	CCANNNNNNNNNTGG	2 cut(s)	447, 934
XmiI	GTMKAC	1 cut(s)	371
XmnI	GAANNNNTTC	1 cut(s)	956
XspI	CTAG	1 cut(s)	653

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.