Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0003898

Physical Location & Seq

Genomic Coordinates Reverse (-)

961389 .. 963775

Gene Structure 2387 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g00980.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGCAATCAAAGATCAGTGCCTTCTTCAAACCCTCCTCTTCTTCTTCCTCGTCACCCAACCCAGCAGCCGCACCTCCGCTTCTTTCCAACGAAAACGACGACGAATTGACCGTCTGGGAGAATACGCAGCACCAGTACTGTAACACCTACAAGCGAAGAGCTCCAAACCTGCAAAGTCGTGGAAGGGACAAAAATCCAGTGAACCAATTGCCGGAGAAACCCTTTTCTGATGGTAATTCCGGGAAGCCGGAATCGACCACATTGGGAAGAACAGTGATCAAGAACAAGAAGAGAAGCTATGCTCAGTTGTTTCTGGACTTTGGCCAGTCTGATTTAAATCTGCACACGTGCTCCACGTGCGGGGTCAAGTATACTGCCGGAGACGAAGACGATGAGAAGGCTCACAGGGCATTTCACAAGGACTATACCAATGGAATTCCATTCAAGGCATGGTGCAATGAGAGGGTTGTTCATTTGCCTTCTGTGGAGGGAGGTCGGATTGTTTTGGTGTTAGATTCTGATCCTCCAGCGCAGAGAAACAAGGTTGGGGAAGTTGTGAAGAGAATGGAGAGTGAGCTTGGAAATGGATGGATTTTGCACAAGTTGTGTAAGGTATATCTGTTCATTTTGTCCCAAAGGGTTGCTGGCTGTCTAGTTGTGGAACCAATTAAAGAGGCATACAAAGTTCCTTCATGTGCAACTGATGGAAGTTCTGATGGTACTACTACACATGAAGCAAAATCATCTACTCTCCAATTTGGGGATATCAGGTTTCAGAGGGAAGTCATGAGAAAAGCCCCTTCTGTTCCCGAAACGTTGAATGAGAATCTCAACGGTGCTATCTTCTGCGAAAGGGAAGCAGTGGCTGCTGTTTGCGGCGTTAGAGCCATTTGGGTCACTCCATCTAACAGAAGAAAACACATAGCCACCCAGTTATTAGATGCCCTGAGGAAAAGTTTCTGCATGGGATTTGTCCTCGAACGTTCTCAACTGGCATTCTCTCAACCAACATCAGCTGGAAGGGCATTGGCATCCAATTATACTGGTGGTGGTGGATATTTTCTGGTGTACAAAACCAACCATATTGTCCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000070 GO:0000278 GO:0000280 GO:0000724 GO:0000725 GO:0000819 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0007135 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009553 GO:0009790 GO:0009791 GO:0009793 GO:0009908 GO:0009956 GO:0009987 GO:0010154 GO:0016043 GO:0016407 GO:0016740 GO:0016746 GO:0016747 GO:0022402 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0034085 GO:0034089 GO:0034641 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0045132 GO:0045144 GO:0046483 GO:0048229 GO:0048285 GO:0048316 GO:0048364 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048589 GO:0048608 GO:0048609 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051177 GO:0051276 GO:0051321 GO:0051716 GO:0060771 GO:0060772 GO:0061458 GO:0061983 GO:0070192 GO:0071704 GO:0071840 GO:0080186 GO:0090304 GO:0090567 GO:0098813 GO:0099402 GO:0140013 GO:0140014 GO:1901360 GO:1903046 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_13 zf-C2H2_3

Protein Analysis

365

Amino Acids

40.25

Weight (kDa)

8.99

Isoelectric Point (pI)

45.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003898)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31400 AT4G31400
fragaria_vesca	FvH4_6g20270
malus_domestica	MD10G1054000.v1.1 MD12G1039800.v1.1 MD14G1038400.v1.1
prunus_persica	Prupe.7G095100_v2.0.a1
pyrus_communis	pycom01g00980 pycom12g03380
rosa_chinensis	RchiOBHm_Chr1g0331051 RchiOBHm_Chr3g0475861
rosa_laevigata	RLG00000001160 RLG00000023805 RLG00000029757
rosa_multiflora	Rmu_sc0000539.1_g000091 Rmu_sc0000539.1_g000092 Rmu_sc0002515.1_g000002
rosa_roxburghii	Rroxscaffold_3G00226030 Rroxscaffold_4G00319510 Rroxscaffold_6G00405780
rosa_rugosa	Rorug01G0093800 Rorug03G0151800 Rorug07G0290800
rosa_samantha	Rh1AG113600 Rh1CG110400 Rh1DG119200 Rh3AG201800 Rh3BG232300 Rh3CG226900 Rh3DG227400 Rh7BG417600 Rh7CG466100
rosa_wichuraiana	Rw1G009260 Rw3G018370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	177
AccI	GTMKAC	1 cut(s)	371
AciI	CCGC	4 cut(s)	69, 77, 360, 876
AclI	AACGTT	2 cut(s)	815, 982
AclWI	GGATC	1 cut(s)	515
AcoI	YGGCCR	1 cut(s)	322
AcsI	RAATTY	1 cut(s)	435
AcvI	CACGTG	2 cut(s)	348, 357
AfaI	GTAC	3 cut(s)	137, 721, 1070
AfiI	CCNNNNNNNGG	3 cut(s)	211, 360, 760
AflIII	ACRYGT	1 cut(s)	345
AgsI	TTSAA	3 cut(s)	28, 445, 820
AluBI	AGCT	4 cut(s)	161, 297, 577, 1016
AluI	AGCT	4 cut(s)	161, 297, 577, 1016
Alw21I	GWGCWC	2 cut(s)	163, 353
Alw26I	GTCTC	1 cut(s)	375
AlwI	GGATC	1 cut(s)	515
AlwNI	CAGNNNCTG	1 cut(s)	866
AoxI	GGCC	1 cut(s)	322
ApeKI	GCWGC	3 cut(s)	65, 127, 866
ApoI	RAATTY	1 cut(s)	435
ArsI	GACNNNNNNTTYG	2 cut(s)	96, 128
Asp700I	GAANNNNTTC	1 cut(s)	956
AspLEI	GCGC	1 cut(s)	532
AsuC2I	CCSGG	1 cut(s)	241
AsuHPI	GGTGA	1 cut(s)	45
AxyI	CCTNAGG	1 cut(s)	947
BalI	TGGCCA	1 cut(s)	324
BanII	GRGCYC	1 cut(s)	163
BbrPI	CACGTG	2 cut(s)	348, 357
BbsI	GAAGAC	1 cut(s)	393
Bbv12I	GWGCWC	2 cut(s)	163, 353
BbvI	GCAGC	3 cut(s)	77, 139, 853
BccI	CCATC	5 cut(s)	224, 582, 698, 710, 910
BclI	TGATCA	1 cut(s)	276
BcnI	CCSGG	1 cut(s)	241
BcoDI	GTCTC	1 cut(s)	375
BfaI	CTAG	1 cut(s)	653
BfuAI	ACCTGC	1 cut(s)	177
BisI	GCNGC	5 cut(s)	66, 69, 128, 867, 877
BlsI	GCNGC	5 cut(s)	67, 70, 129, 868, 878
BmcAI	AGTACT	1 cut(s)	137
Bme1390I	CCNGG	1 cut(s)	241
BmiI	GGNNCC	1 cut(s)	663
BmrFI	CCNGG	1 cut(s)	241
BmrI	ACTGGG	1 cut(s)	925
BmsI	GCATC	2 cut(s)	931, 1040
BmuI	ACTGGG	1 cut(s)	925
BpiI	GAAGAC	1 cut(s)	393
BpmI	CTGGAG	1 cut(s)	510
BpuMI	CCSGG	1 cut(s)	241
BsaAI	YACGTR	2 cut(s)	348, 357
BsaBI	GATNNNNATC	2 cut(s)	336, 519
BsaXI	ACNNNNNCTCC	2 cut(s)	335, 365
Bsc4I	CCNNNNNNNGG	3 cut(s)	211, 360, 760
Bse1I	ACTGG	6 cut(s)	133, 197, 325, 931, 996, 1048
Bse21I	CCTNAGG	1 cut(s)	947
Bse3DI	GCAATG	1 cut(s)	463
Bse8I	GATNNNNATC	2 cut(s)	336, 519
BseGI	GGATG	2 cut(s)	593, 1031
BseJI	GATNNNNATC	2 cut(s)	336, 519
BseLI	CCNNNNNNNGG	3 cut(s)	211, 360, 760
BseMI	GCAATG	1 cut(s)	463
BseMII	CTCAG	2 cut(s)	317, 938
BseNI	ACTGG	6 cut(s)	133, 197, 325, 931, 996, 1048
BseRI	GAGGAG	1 cut(s)	25
BseXI	GCAGC	3 cut(s)	77, 139, 853
BseYI	CCCAGC	1 cut(s)	61
BsgI	GTGCAG	1 cut(s)	326
BshFI	GGCC	1 cut(s)	324
BsiHKAI	GWGCWC	2 cut(s)	163, 353
BsiSI	CCGG	4 cut(s)	212, 240, 248, 378
BslFI	GGGAC	3 cut(s)	200, 616, 1073
BslI	CCNNNNNNNGG	3 cut(s)	211, 360, 760
BsmAI	GTCTC	1 cut(s)	375
BsmBI	CGTCTC	1 cut(s)	375
BsmFI	GGGAC	3 cut(s)	200, 616, 1073
BsmI	GAATGC	1 cut(s)	995
BsnI	GGCC	1 cut(s)	324
Bsp1286I	GDGCHC	2 cut(s)	163, 353
Bsp1407I	TGTACA	1 cut(s)	1068
Bsp143I	GATC	3 cut(s)	12, 276, 520
BspACI	CCGC	4 cut(s)	69, 77, 360, 876
BspANI	GGCC	1 cut(s)	324
BspCNI	CTCAG	2 cut(s)	316, 939
BspHI	TCATGA	1 cut(s)	786
BspLI	GGNNCC	1 cut(s)	663
BspMI	ACCTGC	1 cut(s)	177
BspPI	GGATC	1 cut(s)	515
BspQI	GCTCTTC	1 cut(s)	151
BsrDI	GCAATG	1 cut(s)	463
BsrGI	TGTACA	1 cut(s)	1068
BsrI	ACTGG	6 cut(s)	133, 197, 325, 931, 996, 1048
BssMI	GATC	3 cut(s)	12, 276, 520
BssNAI	GTATAC	1 cut(s)	372
Bst1107I	GTATAC	1 cut(s)	372
Bst4CI	ACNGT	4 cut(s)	112, 140, 274, 836
Bst6I	CTCTTC	4 cut(s)	43, 151, 284, 554
BstAPI	GCANNNNNTGC	1 cut(s)	866
BstAUI	TGTACA	1 cut(s)	1068
BstBAI	YACGTR	2 cut(s)	348, 357
BstC8I	GCNNGC	1 cut(s)	646
BstDEI	CTNAG	2 cut(s)	303, 947
BstF5I	GGATG	2 cut(s)	593, 1031
BstHHI	GCGC	1 cut(s)	532
BstKTI	GATC	3 cut(s)	15, 279, 523
BstMAI	GTCTC	1 cut(s)	375
BstMBI	GATC	3 cut(s)	12, 276, 520
BstMWI	GCNNNNNNNGC	4 cut(s)	357, 407, 866, 1022
BstSCI	CCNGG	1 cut(s)	239
BstV1I	GCAGC	3 cut(s)	77, 139, 853
BstV2I	GAAGAC	1 cut(s)	393
BstZ17I	GTATAC	1 cut(s)	372
Bsu36I	CCTNAGG	1 cut(s)	947
BsuRI	GGCC	1 cut(s)	324
BtsCI	GGATG	2 cut(s)	593, 1031
BtsI	GCAGTG	1 cut(s)	867
BtsIMutI	CAGTG	4 cut(s)	22, 204, 279, 867
BveI	ACCTGC	1 cut(s)	177
Cac8I	GCNNGC	1 cut(s)	646
CaiI	CAGNNNCTG	1 cut(s)	866
CciI	TCATGA	1 cut(s)	786
CfoI	GCGC	1 cut(s)	532
Csp6I	GTAC	3 cut(s)	136, 720, 1069
CviAII	CATG	5 cut(s)	450, 693, 731, 787, 964
CviQI	GTAC	3 cut(s)	136, 720, 1069
DdeI	CTNAG	2 cut(s)	303, 947
DpnI	GATC	3 cut(s)	14, 278, 522
DpnII	GATC	3 cut(s)	12, 276, 520
DraI	TTTAAA	1 cut(s)	336
EaeI	YGGCCR	1 cut(s)	322
Eam1104I	CTCTTC	4 cut(s)	43, 151, 284, 554
EarI	CTCTTC	4 cut(s)	43, 151, 284, 554
Ecl136II	GAGCTC	1 cut(s)	161
Eco24I	GRGCYC	1 cut(s)	163
Eco32I	GATATC	1 cut(s)	766
Eco53kI	GAGCTC	1 cut(s)	161
Eco72I	CACGTG	2 cut(s)	348, 357
Eco81I	CCTNAGG	1 cut(s)	947
EcoICRI	GAGCTC	1 cut(s)	161
EcoRI	GAATTC	1 cut(s)	435
EcoRV	GATATC	1 cut(s)	766
EcoT38I	GRGCYC	1 cut(s)	163
Esp3I	CGTCTC	1 cut(s)	375
FaeI	CATG	5 cut(s)	453, 696, 734, 790, 967
FaqI	GGGAC	3 cut(s)	200, 616, 1073
FatI	CATG	5 cut(s)	449, 692, 730, 786, 963
FauI	CCCGC	1 cut(s)	353
FbaI	TGATCA	1 cut(s)	276
FblI	GTMKAC	1 cut(s)	371
Fnu4HI	GCNGC	5 cut(s)	66, 69, 128, 867, 877
FokI	GGATG	2 cut(s)	600, 1018
FriOI	GRGCYC	1 cut(s)	163
Fsp4HI	GCNGC	5 cut(s)	66, 69, 128, 867, 877
FspBI	CTAG	1 cut(s)	653
GlaI	GCGC	1 cut(s)	531
GluI	GCNGC	5 cut(s)	66, 69, 128, 867, 877
GsaI	CCCAGC	1 cut(s)	65
GsuI	CTGGAG	1 cut(s)	510
HaeIII	GGCC	1 cut(s)	324
HapII	CCGG	4 cut(s)	212, 240, 248, 378
HhaI	GCGC	1 cut(s)	532
Hin1II	CATG	5 cut(s)	453, 696, 734, 790, 967
Hin6I	GCGC	1 cut(s)	530
HinP1I	GCGC	1 cut(s)	530
HinfI	GANTC	3 cut(s)	251, 515, 826
HpaII	CCGG	4 cut(s)	212, 240, 248, 378
HphI	GGTGA	1 cut(s)	45
Hpy166II	GTNNAC	3 cut(s)	202, 372, 1069
Hpy188I	TCNGA	6 cut(s)	229, 331, 498, 520, 715, 777
Hpy188III	TCNNGA	4 cut(s)	280, 314, 787, 809
Hpy8I	GTNNAC	3 cut(s)	202, 372, 1069
Hpy99I	CGWCG	2 cut(s)	101, 104
HpyAV	CCTTC	7 cut(s)	31, 177, 391, 489, 699, 810, 1014
HpyCH4III	ACNGT	4 cut(s)	112, 140, 274, 836
HpyCH4IV	ACGT	4 cut(s)	347, 356, 815, 982
HpyCH4V	TGCA	7 cut(s)	4, 172, 343, 456, 598, 698, 963
HpyF10VI	GCNNNNNNNGC	4 cut(s)	357, 407, 866, 1022
HpyF3I	CTNAG	2 cut(s)	303, 947
HpySE526I	ACGT	4 cut(s)	347, 356, 815, 982
Hsp92II	CATG	5 cut(s)	453, 696, 734, 790, 967
HspAI	GCGC	1 cut(s)	530
Ksp22I	TGATCA	1 cut(s)	276
Kzo9I	GATC	3 cut(s)	12, 276, 520
LguI	GCTCTTC	1 cut(s)	151
LmnI	GCTCC	2 cut(s)	166, 356
Lsp1109I	GCAGC	3 cut(s)	77, 139, 853
LweI	GCATC	2 cut(s)	931, 1040
MaeI	CTAG	1 cut(s)	653
MaeII	ACGT	4 cut(s)	347, 356, 815, 982
MaeIII	GTNAC	3 cut(s)	51, 140, 895
MalI	GATC	3 cut(s)	14, 278, 522
MboI	GATC	3 cut(s)	12, 276, 520
MfeI	CAATTG	1 cut(s)	206
MhlI	GDGCHC	2 cut(s)	163, 353
MlsI	TGGCCA	1 cut(s)	324
MluCI	AATT	7 cut(s)	104, 206, 235, 435, 666, 755, 1036
MluNI	TGGCCA	1 cut(s)	324
MmeI	TCCRAC	2 cut(s)	111, 476
Mox20I	TGGCCA	1 cut(s)	324
MroXI	GAANNNNTTC	1 cut(s)	956
MscI	TGGCCA	1 cut(s)	324
MseI	TTAA	2 cut(s)	335, 669
Msp20I	TGGCCA	1 cut(s)	324
MspA1I	CMGCKG	1 cut(s)	1016
MspI	CCGG	4 cut(s)	212, 240, 248, 378
MspR9I	CCNGG	1 cut(s)	241
MunI	CAATTG	1 cut(s)	206
Mva1269I	GAATGC	1 cut(s)	995
MwoI	GCNNNNNNNGC	4 cut(s)	357, 407, 866, 1022
NciI	CCSGG	1 cut(s)	241
NdeII	GATC	3 cut(s)	12, 276, 520
NlaIII	CATG	5 cut(s)	453, 696, 734, 790, 967
NlaIV	GGNNCC	1 cut(s)	663
NmuCI	GTSAC	2 cut(s)	51, 895
PagI	TCATGA	1 cut(s)	786
PciSI	GCTCTTC	1 cut(s)	151
PcsI	WCGNNNNNNNCGW	3 cut(s)	96, 108, 353
PctI	GAATGC	1 cut(s)	995
PdmI	GAANNNNTTC	1 cut(s)	956
PfeI	GAWTC	3 cut(s)	251, 515, 826
PfoI	TCCNGGA	1 cut(s)	239
PkrI	GCNGC	5 cut(s)	67, 70, 129, 868, 878
PmaCI	CACGTG	2 cut(s)	348, 357
PmlI	CACGTG	2 cut(s)	348, 357
Ppu21I	YACGTR	2 cut(s)	348, 357
Psp124BI	GAGCTC	1 cut(s)	163
Psp1406I	AACGTT	2 cut(s)	815, 982
PspCI	CACGTG	2 cut(s)	348, 357
PspFI	CCCAGC	1 cut(s)	61
PspN4I	GGNNCC	1 cut(s)	663
PstNI	CAGNNNCTG	1 cut(s)	866
PvuII	CAGCTG	1 cut(s)	1016
RsaI	GTAC	3 cut(s)	137, 721, 1070
RsaNI	GTAC	3 cut(s)	136, 720, 1069
SacI	GAGCTC	1 cut(s)	163
SapI	GCTCTTC	1 cut(s)	151
SaqAI	TTAA	2 cut(s)	335, 669
SatI	GCNGC	5 cut(s)	66, 69, 128, 867, 877
Sau3AI	GATC	3 cut(s)	12, 276, 520
ScaI	AGTACT	1 cut(s)	137
ScrFI	CCNGG	1 cut(s)	241
SduI	GDGCHC	2 cut(s)	163, 353
SfaNI	GCATC	2 cut(s)	931, 1040
SmiI	ATTTAAAT	1 cut(s)	336
Sse9I	AATT	7 cut(s)	104, 206, 235, 435, 666, 755, 1036
SsiI	CCGC	4 cut(s)	69, 77, 360, 876
SspMI	CTAG	1 cut(s)	653
SstI	GAGCTC	1 cut(s)	163
StyD4I	CCNGG	1 cut(s)	239
SwaI	ATTTAAAT	1 cut(s)	336
TaaI	ACNGT	4 cut(s)	112, 140, 274, 836
TaiI	ACGT	4 cut(s)	350, 359, 818, 985
TaqI	TCGA	2 cut(s)	254, 978
TasI	AATT	7 cut(s)	104, 206, 235, 435, 666, 755, 1036
TatI	WGTACW	2 cut(s)	135, 1068
TauI	GCSGC	2 cut(s)	71, 879
TfiI	GAWTC	3 cut(s)	251, 515, 826
Tru1I	TTAA	2 cut(s)	335, 669
Tru9I	TTAA	2 cut(s)	335, 669
TscAI	CASTG	4 cut(s)	22, 204, 279, 867
TseFI	GTSAC	2 cut(s)	51, 895
TseI	GCWGC	3 cut(s)	65, 127, 866
Tsp45I	GTSAC	2 cut(s)	51, 895
TspDTI	ATGAA	4 cut(s)	461, 613, 681, 747
TspRI	CASTG	4 cut(s)	22, 204, 279, 867
XapI	RAATTY	1 cut(s)	435
XcmI	CCANNNNNNNNNTGG	2 cut(s)	447, 641
XmiI	GTMKAC	1 cut(s)	371
XmnI	GAANNNNTTC	1 cut(s)	956
XspI	CTAG	1 cut(s)	653
ZrmI	AGTACT	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.