AT4G38260

Transport and Golgi organisation 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0002621
Physical Location & Seq
Reverse (-)
17936921 .. 17938270
1350 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G38260.1

Sequence Viewer

Length: 828 bp
ATGTGCATAGCAGTATTTCTGTGGCAATCGCATCCGCTGTACCCTTTTCTTCTATTTCTCAACAGAGATGAAGATCACAACAGGGCGACAGAGGCGCTGCGTTGGTGGGAAGACGGAGAGACGGTGGGAGGAAGAGACCTTGTTGGCGGCGGGACGTGGCTGGGCTGCACGAGGCATGGCCGTCTGGCTTTCCTCACCAATTTCAAGGAAGCCTCCTCCTTCCCTGCTGCTAAATCCCGTGGAGATCTGCCTCTTCGTTACTTGCAGAGCGAAAAGAGTCCGGCCGAGTTTGCCGAGGAGATCCAAGACGAAATTTCACTCTACAATGGCTTTAACCTGGTTGTCGCTCATGTCTTGTCCAAATCCATGATTTACATTACCAACCGACCACCCCACGGTGACAAGCTCGTGACGCAAGTCTCTCCCGGGATCCATGTCCTTTCCAACGCCAACCTCGACTCCCCTTGGCCCAAGTGTCTGAGGCTGAGGGAGGGTTTCCAACAGCTTCTGGCTGAGAACGGGAGCGGTGAATTCCCGGTGAAGACCATGGTGGAGGAGGTGATGACCAATACTGTCAAGGACGAAGAAACCGAGCTACCTCACGTTTTCACACCAGAGACGGAATACCATCTCAGCTCCATCTTCGTCGACATGCAGAGACCAACTGGGCGTTATGGGACCAGAAGCATCTCTGCGATCATCGTCAAGTCCCATGGAGATGGTGGTGGTGATGGTGAGATTTGCTTCTACGAGAGGCATCTTGAAGAAGGCGATTCATGGAAGGAACACACTCAACAGTTTGTAATAATACAAAACCAAAGCATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TANGO2

Protein Analysis

275

Amino Acids

31.09

Weight (kDa)

5.29

Isoelectric Point (pI)

47.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TANGO2 PF05742 1 - 255 3.5e-72 Transport and Golgi organisation 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 525
AccI GTMKAC 1 cut(s) 648
AciI CCGC 4 cut(s) 35, 147, 150, 525
AclWI GGATC 3 cut(s) 295, 424, 437
AcoI YGGCCR 2 cut(s) 178, 282
AcsI RAATTY 2 cut(s) 312, 530
AfaI GTAC 1 cut(s) 41
AfiI CCNNNNNNNGG 1 cut(s) 395
AgsI TTSAA 2 cut(s) 205, 764
AjiI CACGTC 1 cut(s) 156
AjnI CCWGG 1 cut(s) 336
AluBI AGCT 4 cut(s) 406, 505, 595, 636
AluI AGCT 4 cut(s) 406, 505, 595, 636
Alw26I GTCTC 5 cut(s) 113, 129, 424, 611, 652
AlwI GGATC 3 cut(s) 295, 424, 437
AlwNI CAGNNNCTG 1 cut(s) 508
Ama87I CYCGRG 1 cut(s) 425
AoxI GGCC 3 cut(s) 178, 282, 467
ApeKI GCWGC 3 cut(s) 97, 165, 227
ApoI RAATTY 2 cut(s) 312, 530
AspLEI GCGC 1 cut(s) 97
AspS9I GGNCC 2 cut(s) 468, 678
AsuC2I CCSGG 3 cut(s) 426, 427, 536
AsuHPI GGTGA 7 cut(s) 187, 410, 539, 550, 571, 740, 746
AvaI CYCGRG 1 cut(s) 425
AvaII GGWCC 1 cut(s) 678
BamHI GGATCC 1 cut(s) 429
BauI CACGAG 2 cut(s) 169, 407
BbsI GAAGAC 2 cut(s) 117, 548
BbvCI CCTCAGC 1 cut(s) 485
BbvI GCAGC 3 cut(s) 84, 152, 214
BccI CCATC 4 cut(s) 636, 647, 713, 725
BceAI ACGGC 1 cut(s) 165
BciT130I CCWGG 1 cut(s) 338
BcnI CCSGG 3 cut(s) 426, 427, 536
BcoDI GTCTC 5 cut(s) 113, 129, 424, 611, 652
BfoI RGCGCY 1 cut(s) 98
BglII AGATCT 1 cut(s) 244
BisI GCNGC 4 cut(s) 98, 148, 166, 228
BlsI GCNGC 4 cut(s) 99, 149, 167, 229
Bme1390I CCNGG 4 cut(s) 338, 426, 427, 536
Bme18I GGWCC 1 cut(s) 678
BmeT110I CYCGRG 1 cut(s) 425
BmgBI CACGTC 1 cut(s) 156
BmgT120I GGNCC 2 cut(s) 468, 678
BmiI GGNNCC 2 cut(s) 431, 679
BmrFI CCNGG 4 cut(s) 338, 426, 427, 536
BmrI ACTGGG 1 cut(s) 675
BmsI GCATC 3 cut(s) 40, 696, 766
BmuI ACTGGG 1 cut(s) 675
BoxI GACNNNNGTC 1 cut(s) 416
BpiI GAAGAC 2 cut(s) 117, 548
Bpu10I CCTNAGC 1 cut(s) 485
BpuMI CCSGG 3 cut(s) 426, 427, 536
BsaBI GATNNNNATC 1 cut(s) 72
BsaI GGTCTC 2 cut(s) 129, 652
BsaJI CCNNGG 7 cut(s) 238, 294, 394, 425, 464, 546, 712
BsaXI ACNNNNNCTCC 4 cut(s) 108, 138, 443, 473
Bsc4I CCNNNNNNNGG 1 cut(s) 395
Bse1I ACTGG 1 cut(s) 670
Bse8I GATNNNNATC 1 cut(s) 72
BseBI CCWGG 1 cut(s) 338
BseDI CCNNGG 7 cut(s) 238, 294, 394, 425, 464, 546, 712
BseGI GGATG 1 cut(s) 31
BseJI GATNNNNATC 1 cut(s) 72
BseLI CCNNNNNNNGG 1 cut(s) 395
BseMII CTCAG 4 cut(s) 470, 476, 504, 646
BseNI ACTGG 1 cut(s) 670
BseRI GAGGAG 3 cut(s) 205, 311, 569
BseX3I CGGCCG 1 cut(s) 282
BseXI GCAGC 3 cut(s) 84, 152, 214
BseYI CCCAGC 1 cut(s) 160
BsgI GTGCAG 1 cut(s) 151
Bsh1285I CGRYCG 1 cut(s) 285
BshFI GGCC 3 cut(s) 180, 284, 469
BsiEI CGRYCG 1 cut(s) 285
BsiHKCI CYCGRG 1 cut(s) 425
BsiSI CCGG 3 cut(s) 281, 426, 536
BslFI GGGAC 3 cut(s) 166, 691, 694
BslI CCNNNNNNNGG 1 cut(s) 395
BsmAI GTCTC 5 cut(s) 113, 129, 424, 611, 652
BsmBI CGTCTC 2 cut(s) 113, 611
BsmFI GGGAC 3 cut(s) 166, 691, 694
BsnI GGCC 3 cut(s) 180, 284, 469
Bso31I GGTCTC 2 cut(s) 129, 652
BsoBI CYCGRG 1 cut(s) 425
Bsp143I GATC 5 cut(s) 73, 244, 300, 429, 696
Bsp19I CCATGG 2 cut(s) 546, 712
BspACI CCGC 4 cut(s) 35, 147, 150, 525
BspANI GGCC 3 cut(s) 180, 284, 469
BspCNI CTCAG 4 cut(s) 471, 477, 505, 645
BspLI GGNNCC 2 cut(s) 431, 679
BspPI GGATC 3 cut(s) 295, 424, 437
BspTNI GGTCTC 2 cut(s) 129, 652
BsrBI CCGCTC 1 cut(s) 525
BsrI ACTGG 1 cut(s) 670
BssECI CCNNGG 7 cut(s) 238, 294, 394, 425, 464, 546, 712
BssMI GATC 5 cut(s) 73, 244, 300, 429, 696
BssSI CACGAG 2 cut(s) 169, 407
BssT1I CCWWGG 3 cut(s) 464, 546, 712
Bst2BI CACGAG 2 cut(s) 169, 407
Bst2UI CCWGG 1 cut(s) 338
Bst4CI ACNGT 4 cut(s) 124, 398, 574, 798
Bst6I CTCTTC 2 cut(s) 127, 258
BstDEI CTNAG 4 cut(s) 479, 485, 513, 632
BstDSI CCRYGG 4 cut(s) 238, 394, 546, 712
BstF5I GGATG 1 cut(s) 31
BstH2I RGCGCY 1 cut(s) 98
BstHHI GCGC 1 cut(s) 97
BstKTI GATC 5 cut(s) 76, 247, 303, 432, 699
BstMAI GTCTC 5 cut(s) 113, 129, 424, 611, 652
BstMBI GATC 5 cut(s) 73, 244, 300, 429, 696
BstMCI CGRYCG 1 cut(s) 285
BstMWI GCNNNNNNNGC 3 cut(s) 92, 290, 412
BstNI CCWGG 1 cut(s) 338
BstNSI RCATGY 1 cut(s) 655
BstPAI GACNNNNGTC 1 cut(s) 416
BstSCI CCNGG 4 cut(s) 336, 424, 425, 534
BstV1I GCAGC 3 cut(s) 84, 152, 214
BstV2I GAAGAC 2 cut(s) 117, 548
BstX2I RGATCY 3 cut(s) 244, 300, 429
BstXI CCANNNNNNTGG 1 cut(s) 719
BstYI RGATCY 3 cut(s) 244, 300, 429
BstZI CGGCCG 1 cut(s) 282
BsuRI GGCC 3 cut(s) 180, 284, 469
BtgI CCRYGG 4 cut(s) 238, 394, 546, 712
BtrI CACGTC 1 cut(s) 156
BtsCI GGATG 1 cut(s) 31
CaiI CAGNNNCTG 1 cut(s) 508
CfoI GCGC 1 cut(s) 97
Cfr13I GGNCC 2 cut(s) 468, 678
Cfr9I CCCGGG 1 cut(s) 425
CseI GACGC 1 cut(s) 421
CsiI ACCWGGT 1 cut(s) 336
Csp6I GTAC 1 cut(s) 40
CviAII CATG 8 cut(s) 176, 350, 367, 434, 547, 652, 713, 777
CviQI GTAC 1 cut(s) 40
DdeI CTNAG 4 cut(s) 479, 485, 513, 632
DpnI GATC 5 cut(s) 75, 246, 302, 431, 698
DpnII GATC 5 cut(s) 73, 244, 300, 429, 696
EaeI YGGCCR 2 cut(s) 178, 282
EagI CGGCCG 1 cut(s) 282
Eam1104I CTCTTC 2 cut(s) 127, 258
EarI CTCTTC 2 cut(s) 127, 258
EclXI CGGCCG 1 cut(s) 282
Eco130I CCWWGG 3 cut(s) 464, 546, 712
Eco31I GGTCTC 2 cut(s) 129, 652
Eco47I GGWCC 1 cut(s) 678
Eco52I CGGCCG 1 cut(s) 282
Eco88I CYCGRG 1 cut(s) 425
EcoRI GAATTC 1 cut(s) 530
EcoRII CCWGG 1 cut(s) 336
EcoT14I CCWWGG 3 cut(s) 464, 546, 712
ErhI CCWWGG 3 cut(s) 464, 546, 712
Esp3I CGTCTC 2 cut(s) 113, 611
FaeI CATG 8 cut(s) 179, 353, 370, 437, 550, 655, 716, 780
FaqI GGGAC 3 cut(s) 166, 691, 694
FatI CATG 8 cut(s) 175, 349, 366, 433, 546, 651, 712, 776
FauI CCCGC 1 cut(s) 143
FblI GTMKAC 1 cut(s) 648
Fnu4HI GCNGC 4 cut(s) 98, 148, 166, 228
FokI GGATG 1 cut(s) 18
Fsp4HI GCNGC 4 cut(s) 98, 148, 166, 228
GlaI GCGC 1 cut(s) 96
GluI GCNGC 4 cut(s) 98, 148, 166, 228
GsaI CCCAGC 1 cut(s) 164
HaeII RGCGCY 1 cut(s) 98
HaeIII GGCC 3 cut(s) 180, 284, 469
HapII CCGG 3 cut(s) 281, 426, 536
HgaI GACGC 1 cut(s) 421
HhaI GCGC 1 cut(s) 97
Hin1II CATG 8 cut(s) 179, 353, 370, 437, 550, 655, 716, 780
Hin6I GCGC 1 cut(s) 95
HinP1I GCGC 1 cut(s) 95
HincII GTYRAC 1 cut(s) 649
HindII GTYRAC 1 cut(s) 649
HinfI GANTC 3 cut(s) 277, 458, 773
HpaII CCGG 3 cut(s) 281, 426, 536
HphI GGTGA 7 cut(s) 187, 410, 539, 550, 571, 740, 746
Hpy166II GTNNAC 1 cut(s) 649
Hpy188I TCNGA 1 cut(s) 480
Hpy188III TCNNGA 2 cut(s) 409, 761
Hpy8I GTNNAC 1 cut(s) 649
Hpy99I CGWCG 1 cut(s) 650
HpyAV CCTTC 3 cut(s) 229, 761, 775
HpyCH4III ACNGT 4 cut(s) 124, 398, 574, 798
HpyCH4IV ACGT 2 cut(s) 155, 603
HpyCH4V TGCA 4 cut(s) 6, 168, 265, 655
HpyF10VI GCNNNNNNNGC 3 cut(s) 92, 290, 412
HpyF3I CTNAG 4 cut(s) 479, 485, 513, 632
HpySE526I ACGT 2 cut(s) 155, 603
Hsp92II CATG 8 cut(s) 179, 353, 370, 437, 550, 655, 716, 780
HspAI GCGC 1 cut(s) 95
Kzo9I GATC 5 cut(s) 73, 244, 300, 429, 696
LmnI GCTCC 2 cut(s) 522, 641
Lsp1109I GCAGC 3 cut(s) 84, 152, 214
LweI GCATC 3 cut(s) 40, 696, 766
MabI ACCWGGT 1 cut(s) 336
MaeII ACGT 2 cut(s) 155, 603
MaeIII GTNAC 3 cut(s) 257, 398, 409
MalI GATC 5 cut(s) 75, 246, 302, 431, 698
MbiI CCGCTC 1 cut(s) 525
MboI GATC 5 cut(s) 73, 244, 300, 429, 696
MboII GAAGA 9 cut(s) 41, 83, 122, 144, 245, 553, 596, 634, 776
MflI RGATCY 3 cut(s) 244, 300, 429
MluCI AATT 3 cut(s) 199, 312, 530
MlyI GAGTC 2 cut(s) 286, 452
MmeI TCCRAC 2 cut(s) 468, 523
MseI TTAA 1 cut(s) 333
MslI CAYNNNNRTG 1 cut(s) 717
MspA1I CMGCKG 1 cut(s) 37
MspI CCGG 3 cut(s) 281, 426, 536
MspR9I CCNGG 4 cut(s) 338, 426, 427, 536
MvaI CCWGG 1 cut(s) 338
MwoI GCNNNNNNNGC 3 cut(s) 92, 290, 412
NciI CCSGG 3 cut(s) 426, 427, 536
NcoI CCATGG 2 cut(s) 546, 712
NdeII GATC 5 cut(s) 73, 244, 300, 429, 696
NlaIII CATG 8 cut(s) 179, 353, 370, 437, 550, 655, 716, 780
NlaIV GGNNCC 2 cut(s) 431, 679
NmeAIII GCCGAG 2 cut(s) 310, 319
NmuCI GTSAC 2 cut(s) 398, 409
NspI RCATGY 1 cut(s) 655
PcsI WCGNNNNNNNCGW 2 cut(s) 453, 588
PfeI GAWTC 1 cut(s) 773
PkrI GCNGC 4 cut(s) 99, 149, 167, 229
PleI GAGTC 2 cut(s) 285, 452
PpsI GAGTC 2 cut(s) 285, 452
PshAI GACNNNNGTC 1 cut(s) 416
Psp6I CCWGG 1 cut(s) 336
PspFI CCCAGC 1 cut(s) 160
PspGI CCWGG 1 cut(s) 336
PspN4I GGNNCC 2 cut(s) 431, 679
PspPI GGNCC 2 cut(s) 468, 678
PstNI CAGNNNCTG 1 cut(s) 508
PsuI RGATCY 3 cut(s) 244, 300, 429
RsaI GTAC 1 cut(s) 41
RsaNI GTAC 1 cut(s) 40
RseI CAYNNNNRTG 1 cut(s) 717
SalI GTCGAC 1 cut(s) 647
SaqAI TTAA 1 cut(s) 333
SatI GCNGC 4 cut(s) 98, 148, 166, 228
Sau3AI GATC 5 cut(s) 73, 244, 300, 429, 696
Sau96I GGNCC 2 cut(s) 468, 678
SchI GAGTC 2 cut(s) 286, 452
ScrFI CCNGG 4 cut(s) 338, 426, 427, 536
SexAI ACCWGGT 1 cut(s) 336
SfaNI GCATC 3 cut(s) 40, 696, 766
SinI GGWCC 1 cut(s) 678
SmaI CCCGGG 1 cut(s) 427
SmiMI CAYNNNNRTG 1 cut(s) 717
Sse9I AATT 3 cut(s) 199, 312, 530
SsiI CCGC 4 cut(s) 35, 147, 150, 525
StyD4I CCNGG 4 cut(s) 336, 424, 425, 534
StyI CCWWGG 3 cut(s) 464, 546, 712
TaaI ACNGT 4 cut(s) 124, 398, 574, 798
TaiI ACGT 2 cut(s) 158, 606
TaqI TCGA 2 cut(s) 456, 648
TasI AATT 3 cut(s) 199, 312, 530
TauI GCSGC 1 cut(s) 150
TfiI GAWTC 1 cut(s) 773
Tru1I TTAA 1 cut(s) 333
Tru9I TTAA 1 cut(s) 333
TseFI GTSAC 2 cut(s) 398, 409
TseI GCWGC 3 cut(s) 97, 165, 227
Tsp45I GTSAC 2 cut(s) 398, 409
TspDTI ATGAA 2 cut(s) 84, 765
TspGWI ACGGA 2 cut(s) 129, 635
TspMI CCCGGG 1 cut(s) 425
VpaK11BI GGWCC 1 cut(s) 678
XapI RAATTY 2 cut(s) 312, 530
XceI RCATGY 1 cut(s) 655
XcmI CCANNNNNNNNNTGG 1 cut(s) 719
XmaI CCCGGG 1 cut(s) 425
XmiI GTMKAC 1 cut(s) 648
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.