MD06G1010300.v1.1

Transport and Golgi organization 2 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0002621
Physical Location & Seq
Forward (+)
1210398 .. 1211868
1471 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1010300.v1.1.491

Sequence Viewer

Length: 831 bp
ATGTGTATAGCAGTGTTCCTTTGGCAAGCCCACCCTCTTTACCCTCTCCTTCTCCTGCAAAACAGAGATGAATATCACAACAGGCCTACAAAACCAGTCGGATGGTGGGAAGGTTGCGAGATACTAGGCGGGCGAGATGAGGTTGCAGGAGGGACATGGTTGGCCTGTTCAAGAGGAGGGAGACTCGCTTTTCTTACAAATGTACTCGAGCTGGACACCGACCCGGAGGCAAAGAGCCGCGGAGACCTACCTGTGCTCTTCTTAAAGAGCACCAAGACTCCAAAGGAATTTGCACAAGAATTGGCCAAGGAGGCGCATCGGTATAACGGGTTTAACTTGGTTTTGGCAGACATTCCTTCCAAAACCATGATTTACCTCTCCAACAGGCCAAAAGGAGAAGCGATTCTTGTTCAAGAAGTTTCTCCAGGGATTCATGTGCTATCAAATGCAAAGCTCGACTCACCCTGGCACAAGGTTGCTCAGCGCTTGCGGTTAAATTTCGAGGAAGAGATTAAGAAATACGGTGAAGGTGAAATGCCCGTGAAGGAAATGATTCAAAAGCTAATGAGGGACGGAGTTAAAGCTGATAAGAGAGAATTACCTCATATATGTGAACTTGACTGGGAGTTCAATCTAAGCTCCATATTTGTTGAAGTTGACACGCCACTGGGACGCTATGGCACCAGGAGCAGCGCTGCAGTGACAGCAAGGCAAAACGGTGAGCTGAGTTTTTATGAGAACTATCTTGACAATGATCACACATGGAATGAACATACTGTGAACTATCAAATTCAGAAGCTGAGTTGGTTGAAGGAGATATGGAATCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TANGO2

Protein Analysis

277

Amino Acids

31.69

Weight (kDa)

5.95

Isoelectric Point (pI)

34.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TANGO2 PF05742 1 - 250 8.6e-73 Transport and Golgi organisation 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 680
AccII CGCG 1 cut(s) 240
AciI CCGC 4 cut(s) 129, 238, 240, 490
AcoI YGGCCR 1 cut(s) 303
AcsI RAATTY 3 cut(s) 287, 496, 789
AfaI GTAC 1 cut(s) 204
AfeI AGCGCT 2 cut(s) 485, 694
AgsI TTSAA 6 cut(s) 171, 413, 557, 631, 653, 811
AjnI CCWGG 3 cut(s) 424, 464, 683
AluBI AGCT 7 cut(s) 211, 454, 562, 584, 639, 724, 799
AluI AGCT 7 cut(s) 211, 454, 562, 584, 639, 724, 799
Alw21I GWGCWC 2 cut(s) 258, 272
Alw26I GTCTC 2 cut(s) 175, 237
AlwNI CAGNNNCTG 1 cut(s) 799
Ama87I CYCGRG 1 cut(s) 206
Aor51HI AGCGCT 2 cut(s) 485, 694
AoxI GGCC 4 cut(s) 83, 162, 303, 386
ApeKI GCWGC 2 cut(s) 690, 695
ApoI RAATTY 3 cut(s) 287, 496, 789
Asp700I GAANNNNTTC 2 cut(s) 402, 552
AspLEI GCGC 3 cut(s) 316, 486, 695
AsuC2I CCSGG 1 cut(s) 224
AsuHPI GGTGA 4 cut(s) 453, 536, 542, 731
AvaI CYCGRG 1 cut(s) 206
BalI TGGCCA 1 cut(s) 305
BanI GGYRCC 1 cut(s) 680
Bbv12I GWGCWC 2 cut(s) 258, 272
BbvI GCAGC 2 cut(s) 682, 702
BccI CCATC 1 cut(s) 96
BciT130I CCWGG 3 cut(s) 426, 466, 685
BclI TGATCA 1 cut(s) 754
BcnI CCSGG 1 cut(s) 224
BcoDI GTCTC 2 cut(s) 175, 237
BfaI CTAG 1 cut(s) 125
BfmI CTRYAG 1 cut(s) 696
BfoI RGCGCY 2 cut(s) 487, 696
BglI GCCNNNNNGGC 1 cut(s) 311
BisI GCNGC 3 cut(s) 238, 691, 696
BlpI GCTNAGC 1 cut(s) 480
BlsI GCNGC 3 cut(s) 239, 692, 697
Bme1390I CCNGG 4 cut(s) 224, 426, 466, 685
BmeT110I CYCGRG 1 cut(s) 206
BmiI GGNNCC 1 cut(s) 682
BmrFI CCNGG 4 cut(s) 224, 426, 466, 685
BmrI ACTGGG 2 cut(s) 631, 677
BmsI GCATC 1 cut(s) 325
BmuI ACTGGG 2 cut(s) 631, 677
BplI GAGNNNNNCTC 2 cut(s) 168, 200
BpmI CTGGAG 1 cut(s) 408
Bpu1102I GCTNAGC 1 cut(s) 480
BpuMI CCSGG 1 cut(s) 224
BsaBI GATNNNNATC 1 cut(s) 72
BsaI GGTCTC 1 cut(s) 237
BsaJI CCNNGG 4 cut(s) 238, 306, 425, 464
BsaXI ACNNNNNCTCC 2 cut(s) 262, 292
Bse1I ACTGG 3 cut(s) 95, 626, 672
Bse8I GATNNNNATC 1 cut(s) 72
BseBI CCWGG 3 cut(s) 426, 466, 685
BseDI CCNNGG 4 cut(s) 238, 306, 425, 464
BseGI GGATG 1 cut(s) 107
BseJI GATNNNNATC 1 cut(s) 72
BseMII CTCAG 3 cut(s) 494, 716, 791
BseNI ACTGG 3 cut(s) 95, 626, 672
BseRI GAGGAG 1 cut(s) 189
BseXI GCAGC 2 cut(s) 682, 702
Bsh1236I CGCG 1 cut(s) 240
BshFI GGCC 4 cut(s) 85, 164, 305, 388
BshNI GGYRCC 1 cut(s) 680
BsiHKAI GWGCWC 2 cut(s) 258, 272
BsiHKCI CYCGRG 1 cut(s) 206
BsiSI CCGG 1 cut(s) 224
BslFI GGGAC 3 cut(s) 166, 584, 684
BsmAI GTCTC 2 cut(s) 175, 237
BsmFI GGGAC 3 cut(s) 166, 584, 684
BsnI GGCC 4 cut(s) 85, 164, 305, 388
Bso31I GGTCTC 1 cut(s) 237
BsoBI CYCGRG 1 cut(s) 206
Bsp1286I GDGCHC 2 cut(s) 258, 272
Bsp143I GATC 1 cut(s) 754
Bsp1720I GCTNAGC 1 cut(s) 480
BspACI CCGC 4 cut(s) 129, 238, 240, 490
BspANI GGCC 4 cut(s) 85, 164, 305, 388
BspCNI CTCAG 3 cut(s) 493, 717, 792
BspFNI CGCG 1 cut(s) 240
BspLI GGNNCC 1 cut(s) 682
BspMAI CTGCAG 1 cut(s) 700
BspQI GCTCTTC 1 cut(s) 263
BspT107I GGYRCC 1 cut(s) 680
BspTNI GGTCTC 1 cut(s) 237
BsrI ACTGG 3 cut(s) 95, 626, 672
BssECI CCNNGG 4 cut(s) 238, 306, 425, 464
BssMI GATC 1 cut(s) 754
BssT1I CCWWGG 1 cut(s) 306
Bst2UI CCWGG 3 cut(s) 426, 466, 685
Bst4CI ACNGT 3 cut(s) 524, 719, 778
Bst6I CTCTTC 2 cut(s) 263, 501
BstC8I GCNNGC 3 cut(s) 27, 131, 488
BstDEI CTNAG 4 cut(s) 480, 635, 725, 800
BstDSI CCRYGG 1 cut(s) 238
BstF5I GGATG 1 cut(s) 107
BstFNI CGCG 1 cut(s) 240
BstH2I RGCGCY 2 cut(s) 487, 696
BstHHI GCGC 3 cut(s) 316, 486, 695
BstKTI GATC 1 cut(s) 757
BstMAI GTCTC 2 cut(s) 175, 237
BstMBI GATC 1 cut(s) 754
BstMWI GCNNNNNNNGC 3 cut(s) 311, 687, 704
BstNI CCWGG 3 cut(s) 426, 466, 685
BstSCI CCNGG 4 cut(s) 222, 424, 464, 683
BstSFI CTRYAG 1 cut(s) 696
BstUI CGCG 1 cut(s) 240
BstV1I GCAGC 2 cut(s) 682, 702
BstXI CCANNNNNNTGG 1 cut(s) 102
BsuRI GGCC 4 cut(s) 85, 164, 305, 388
BtgI CCRYGG 1 cut(s) 238
BtsCI GGATG 1 cut(s) 107
BtsI GCAGTG 2 cut(s) 18, 705
BtsIMutI CAGTG 3 cut(s) 18, 665, 705
Cac8I GCNNGC 3 cut(s) 27, 131, 488
CaiI CAGNNNCTG 1 cut(s) 799
CfoI GCGC 3 cut(s) 316, 486, 695
Cfr42I CCGCGG 1 cut(s) 241
CseI GACGC 1 cut(s) 681
Csp6I GTAC 1 cut(s) 203
CviAII CATG 4 cut(s) 156, 367, 434, 762
CviQI GTAC 1 cut(s) 203
DdeI CTNAG 4 cut(s) 480, 635, 725, 800
DpnI GATC 1 cut(s) 756
DpnII GATC 1 cut(s) 754
EaeI YGGCCR 1 cut(s) 303
Eam1104I CTCTTC 2 cut(s) 263, 501
EarI CTCTTC 2 cut(s) 263, 501
Eco130I CCWWGG 1 cut(s) 306
Eco147I AGGCCT 1 cut(s) 85
Eco31I GGTCTC 1 cut(s) 237
Eco47III AGCGCT 2 cut(s) 485, 694
Eco88I CYCGRG 1 cut(s) 206
EcoRII CCWGG 3 cut(s) 424, 464, 683
EcoT14I CCWWGG 1 cut(s) 306
ErhI CCWWGG 1 cut(s) 306
FaeI CATG 4 cut(s) 159, 370, 437, 765
FalI AAGNNNNNCTT 2 cut(s) 390, 422
FaqI GGGAC 3 cut(s) 166, 584, 684
FatI CATG 4 cut(s) 155, 366, 433, 761
FauI CCCGC 1 cut(s) 122
FbaI TGATCA 1 cut(s) 754
Fnu4HI GCNGC 3 cut(s) 238, 691, 696
FokI GGATG 1 cut(s) 114
Fsp4HI GCNGC 3 cut(s) 238, 691, 696
FspBI CTAG 1 cut(s) 125
GlaI GCGC 3 cut(s) 315, 485, 694
GluI GCNGC 3 cut(s) 238, 691, 696
GsuI CTGGAG 1 cut(s) 408
HaeII RGCGCY 2 cut(s) 487, 696
HaeIII GGCC 4 cut(s) 85, 164, 305, 388
HapII CCGG 1 cut(s) 224
HgaI GACGC 1 cut(s) 681
HhaI GCGC 3 cut(s) 316, 486, 695
Hin1II CATG 4 cut(s) 159, 370, 437, 765
Hin6I GCGC 3 cut(s) 314, 484, 693
HinP1I GCGC 3 cut(s) 314, 484, 693
HincII GTYRAC 1 cut(s) 658
HindII GTYRAC 1 cut(s) 658
HinfI GANTC 7 cut(s) 183, 277, 403, 430, 458, 553, 823
HpaII CCGG 1 cut(s) 224
HphI GGTGA 4 cut(s) 453, 536, 542, 731
Hpy166II GTNNAC 3 cut(s) 614, 658, 781
Hpy188I TCNGA 2 cut(s) 101, 795
Hpy188III TCNNGA 3 cut(s) 171, 413, 746
Hpy8I GTNNAC 3 cut(s) 614, 658, 781
HpyAV CCTTC 6 cut(s) 59, 104, 366, 521, 538, 805
HpyCH4III ACNGT 3 cut(s) 524, 719, 778
HpyCH4V TGCA 5 cut(s) 58, 146, 293, 449, 698
HpyF10VI GCNNNNNNNGC 3 cut(s) 311, 687, 704
HpyF3I CTNAG 4 cut(s) 480, 635, 725, 800
Hsp92II CATG 4 cut(s) 159, 370, 437, 765
HspAI GCGC 3 cut(s) 314, 484, 693
Ksp22I TGATCA 1 cut(s) 754
KspI CCGCGG 1 cut(s) 241
Kzo9I GATC 1 cut(s) 754
LguI GCTCTTC 1 cut(s) 263
LmnI GCTCC 2 cut(s) 644, 687
Lsp1109I GCAGC 2 cut(s) 682, 702
LweI GCATC 1 cut(s) 325
MaeI CTAG 1 cut(s) 125
MaeIII GTNAC 1 cut(s) 700
MalI GATC 1 cut(s) 756
MboI GATC 1 cut(s) 754
MboII GAAGA 2 cut(s) 250, 518
MhlI GDGCHC 2 cut(s) 258, 272
MlsI TGGCCA 1 cut(s) 305
MluCI AATT 5 cut(s) 287, 299, 496, 596, 789
MluNI TGGCCA 1 cut(s) 305
MlyI GAGTC 3 cut(s) 177, 271, 452
MmeI TCCRAC 2 cut(s) 79, 405
Mox20I TGGCCA 1 cut(s) 305
MroXI GAANNNNTTC 2 cut(s) 402, 552
MscI TGGCCA 1 cut(s) 305
MseI TTAA 5 cut(s) 263, 333, 494, 513, 579
MslI CAYNNNNRTG 1 cut(s) 609
Msp20I TGGCCA 1 cut(s) 305
MspA1I CMGCKG 1 cut(s) 240
MspI CCGG 1 cut(s) 224
MspR9I CCNGG 4 cut(s) 224, 426, 466, 685
MvaI CCWGG 3 cut(s) 426, 466, 685
MvnI CGCG 1 cut(s) 240
MwoI GCNNNNNNNGC 3 cut(s) 311, 687, 704
NciI CCSGG 1 cut(s) 224
NdeII GATC 1 cut(s) 754
NlaIII CATG 4 cut(s) 159, 370, 437, 765
NlaIV GGNNCC 1 cut(s) 682
NmuCI GTSAC 1 cut(s) 700
PaeR7I CTCGAG 1 cut(s) 206
PceI AGGCCT 1 cut(s) 85
PciSI GCTCTTC 1 cut(s) 263
PdmI GAANNNNTTC 2 cut(s) 402, 552
PfeI GAWTC 4 cut(s) 403, 430, 553, 823
PkrI GCNGC 3 cut(s) 239, 692, 697
PleI GAGTC 3 cut(s) 177, 271, 452
PpsI GAGTC 3 cut(s) 177, 271, 452
Psp6I CCWGG 3 cut(s) 424, 464, 683
PspGI CCWGG 3 cut(s) 424, 464, 683
PspN4I GGNNCC 1 cut(s) 682
PspXI VCTCGAGB 1 cut(s) 206
PstI CTGCAG 1 cut(s) 700
PstNI CAGNNNCTG 1 cut(s) 799
RsaI GTAC 1 cut(s) 204
RsaNI GTAC 1 cut(s) 203
RseI CAYNNNNRTG 1 cut(s) 609
SacII CCGCGG 1 cut(s) 241
SapI GCTCTTC 1 cut(s) 263
SaqAI TTAA 5 cut(s) 263, 333, 494, 513, 579
SatI GCNGC 3 cut(s) 238, 691, 696
Sau3AI GATC 1 cut(s) 754
SchI GAGTC 3 cut(s) 177, 271, 452
ScrFI CCNGG 4 cut(s) 224, 426, 466, 685
SduI GDGCHC 2 cut(s) 258, 272
SfaNI GCATC 1 cut(s) 325
SfcI CTRYAG 1 cut(s) 696
Sfr274I CTCGAG 1 cut(s) 206
Sfr303I CCGCGG 1 cut(s) 241
SgrBI CCGCGG 1 cut(s) 241
SlaI CTCGAG 1 cut(s) 206
SmiMI CAYNNNNRTG 1 cut(s) 609
SmlI CTYRAG 1 cut(s) 206
SmoI CTYRAG 1 cut(s) 206
Sse9I AATT 5 cut(s) 287, 299, 496, 596, 789
SseBI AGGCCT 1 cut(s) 85
SsiI CCGC 4 cut(s) 129, 238, 240, 490
SspMI CTAG 1 cut(s) 125
StuI AGGCCT 1 cut(s) 85
StyD4I CCNGG 4 cut(s) 222, 424, 464, 683
StyI CCWWGG 1 cut(s) 306
TaaI ACNGT 3 cut(s) 524, 719, 778
TaqI TCGA 3 cut(s) 207, 456, 501
TasI AATT 5 cut(s) 287, 299, 496, 596, 789
TatI WGTACW 1 cut(s) 202
TauI GCSGC 1 cut(s) 240
TfiI GAWTC 4 cut(s) 403, 430, 553, 823
Tru1I TTAA 5 cut(s) 263, 333, 494, 513, 579
Tru9I TTAA 5 cut(s) 263, 333, 494, 513, 579
TscAI CASTG 3 cut(s) 18, 672, 705
TseFI GTSAC 1 cut(s) 700
TseI GCWGC 2 cut(s) 690, 695
Tsp45I GTSAC 1 cut(s) 700
TspDTI ATGAA 3 cut(s) 84, 422, 783
TspGWI ACGGA 1 cut(s) 588
TspRI CASTG 3 cut(s) 18, 672, 705
XapI RAATTY 3 cut(s) 287, 496, 789
XcmI CCANNNNNNNNNTGG 1 cut(s) 102
XhoI CTCGAG 1 cut(s) 206
XmnI GAANNNNTTC 2 cut(s) 402, 552
XspI CTAG 1 cut(s) 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.