Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0002621

Physical Location & Seq

Genomic Coordinates Reverse (-)

46294362 .. 46299890

Gene Structure 5529 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG366900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGGAGAAGAAGAAGAGTAGAGTACTGATAATCAGAGCAACAGGAAATCTGGGTCACCATTTAGCCAATGCCAGCCTCCATTTCTCTCACCCCACTTTCGCTCTCGTCCGACCCGACACCTTCTCCGACCCCCACAAGTCCCAAAACCTTCGAGCCCTCTCCGATGCCGGCGTCACACTCCTCCAAGGTTCGCTGGAAGACGAAGAGAACCTTGTTGGAGTAGTGAAGCAAGTTGATGTTGTGATTTGTGCTGTTCAGGTCAAACAGGGCAAAAACAGTCCGATGGAATTTGCGGAGGAAGTTGTTAAGGAGGCAGATAAATACAATGGGTTTAACCTGATATTGGCTGATCTTTGTTCTAAGACCATGCTTTATGTAACCAACAGACCAAAGGAGGAAAAAAAGTTTATCACTGAGGTTTCACCGGGGATTCATGTATTGACAAATGATGCAATGCTTGATTCTCCTTGGCCTAAGTCTCAACGACTTAGCAATAGTTTCAAAGAGATGCTCAACAAGTATGGAAATGATGAAGTTTCGTTAAAGGAAATGGCTCTACGACTAATGACAGACGAGACCAGAGACGACAAAAGCCTGCTACCTTGCATTTATTCTCCAGAAGTAGAATACGAACTAAGTTCCATATATATTGAATATGCCCCTGCATTGGGGTATTGTGGTACTAGAAGCACTGAAGCAGTGTCTATCAATACAATTGGGGAAGTCACCTTTTATGAGAGATTTATAGCTGGGGATTGGCATGAAAGGACCGAGACCTTCCAGATTGAAGAGGAGAGAATTATATGGAAGTATCTGTGCCCTATTGCTTCATTTGATTTGGATCGTCAAGTATCGAATAAGTTATTGTTTCCTTGGAATTTAAGCCACAGCCTTATTAAAGGAAGCAAAATTCATAAGACATATAAAGCTGGCTTTTGGGAATCGATTAAATCTGGGAGAGAAGGATTGGAGGGTGATGAGCTAAGAAGGAATTCTGATGTCATGGAGATCCTAAAGAAGACAAGTTTCCAAAGGTTATTGGCTCTAGCGCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TANGO2

Protein Analysis

351

Amino Acids

39.95

Weight (kDa)

6.05

Isoelectric Point (pI)

38.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NmrA	PF05368	4 - 88	5.8e-18	NmrA-like family
NAD_binding_10	PF13460	13 - 109	2e-07	NAD(P)H-binding
TANGO2	PF05742	88 - 248	1.3e-29	Transport and Golgi organisation 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002621)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38260
fragaria_vesca	FvH4_2g16710 FvH4_2g16710 FvH4_2g16710 FvH4_5g25460 FvH4_5g25460
malus_domestica	MD05G1135200.v1.1 MD06G1010300.v1.1
prunus_persica	Prupe.8G179100_v2.0.a1
pyrus_communis	pycom05g13180
rosa_chinensis	RchiOBHm_Chr6g0280841 RchiOBHm_Chr7g0215641
rosa_laevigata	RLG00000002635 RLG00000002636 RLG00000013026
rosa_multiflora	Rmu_co8074068.1_g000001 Rmu_sc0000898.1_g000036 Rmu_sc0007602.1_g000001 Rmu_sc0023262.1_g000006 Rmu_ssc0000024.1_g000008
rosa_roxburghii	Rroxscaffold_3G00243960 Rroxscaffold_7G00187580
rosa_rugosa	Rorug06G0134900 Rorug06G0135000 Rorug07G0155800 Rorug07G0155800
rosa_samantha	Rh3CG366900 Rh6AG248300 Rh6BG249800 Rh6BG249900 Rh6CG251000 Rh6DG242600 Rh7AG292500 Rh7BG284800 Rh7CG312400 Rh7DG295700
rosa_wichuraiana	Rw0G020460 Rw4G008690 Rw6G021460 Rw7G024890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	1051
AciI	CCGC	1 cut(s)	293
AclWI	GGATC	2 cut(s)	849, 1003
AcsI	RAATTY	4 cut(s)	287, 877, 909, 991
AcuI	CTGAAG	1 cut(s)	714
AcyI	GRCGYC	1 cut(s)	171
AfaI	GTAC	2 cut(s)	24, 682
AfiI	CCNNNNNNNGG	3 cut(s)	343, 667, 668
AgsI	TTSAA	3 cut(s)	502, 653, 788
AluBI	AGCT	3 cut(s)	749, 929, 982
AluI	AGCT	3 cut(s)	749, 929, 982
Alw26I	GTCTC	4 cut(s)	483, 569, 576, 767
AlwI	GGATC	2 cut(s)	849, 1003
AoxI	GGCC	1 cut(s)	470
ApoI	RAATTY	4 cut(s)	287, 877, 909, 991
Asp700I	GAANNNNTTC	1 cut(s)	991
AspLEI	GCGC	1 cut(s)	1051
AspS9I	GGNCC	1 cut(s)	768
AsuC2I	CCSGG	1 cut(s)	426
AsuHPI	GGTGA	5 cut(s)	47, 80, 414, 718, 986
AvaII	GGWCC	1 cut(s)	768
BaeGI	GKGCMC	1 cut(s)	821
BanII	GRGCYC	1 cut(s)	157
BbsI	GAAGAC	2 cut(s)	204, 1025
BccI	CCATC	1 cut(s)	277
BcnI	CCSGG	1 cut(s)	426
BcoDI	GTCTC	4 cut(s)	483, 569, 576, 767
BfaI	CTAG	2 cut(s)	684, 1046
BmcAI	AGTACT	1 cut(s)	24
Bme1390I	CCNGG	1 cut(s)	426
Bme18I	GGWCC	1 cut(s)	768
BmgT120I	GGNCC	1 cut(s)	768
BmrFI	CCNGG	1 cut(s)	426
BmsI	GCATC	3 cut(s)	154, 439, 498
BpiI	GAAGAC	2 cut(s)	204, 1025
BpmI	CTGGAG	1 cut(s)	600
BpuMI	CCSGG	1 cut(s)	426
Bsa29I	ATCGAT	1 cut(s)	944
BsaBI	GATNNNNATC	1 cut(s)	840
BsaHI	GRCGYC	1 cut(s)	171
BsaI	GGTCTC	2 cut(s)	569, 767
BsaJI	CCNNGG	4 cut(s)	184, 425, 467, 872
BsaXI	ACNNNNNCTCC	2 cut(s)	107, 137
Bsc4I	CCNNNNNNNGG	3 cut(s)	343, 667, 668
Bse118I	RCCGGY	1 cut(s)	167
Bse3DI	GCAATG	1 cut(s)	459
Bse8I	GATNNNNATC	1 cut(s)	840
BseCI	ATCGAT	1 cut(s)	944
BseDI	CCNNGG	4 cut(s)	184, 425, 467, 872
BseJI	GATNNNNATC	1 cut(s)	840
BseLI	CCNNNNNNNGG	3 cut(s)	343, 667, 668
BseMI	GCAATG	1 cut(s)	459
BseMII	CTCAG	1 cut(s)	405
BseRI	GAGGAG	2 cut(s)	170, 806
BseSI	GKGCMC	1 cut(s)	821
BseYI	CCCAGC	1 cut(s)	749
Bsh1236I	CGCG	1 cut(s)	1051
BshFI	GGCC	1 cut(s)	472
BshVI	ATCGAT	1 cut(s)	944
BsiSI	CCGG	2 cut(s)	168, 425
BslFI	GGGAC	1 cut(s)	124
BslI	CCNNNNNNNGG	3 cut(s)	343, 667, 668
BsmAI	GTCTC	4 cut(s)	483, 569, 576, 767
BsmBI	CGTCTC	1 cut(s)	576
BsmFI	GGGAC	1 cut(s)	124
BsnI	GGCC	1 cut(s)	472
Bso31I	GGTCTC	2 cut(s)	569, 767
Bsp1286I	GDGCHC	2 cut(s)	157, 821
Bsp143I	GATC	3 cut(s)	349, 841, 1008
BspACI	CCGC	1 cut(s)	293
BspANI	GGCC	1 cut(s)	472
BspCNI	CTCAG	1 cut(s)	406
BspDI	ATCGAT	1 cut(s)	944
BspFNI	CGCG	1 cut(s)	1051
BspPI	GGATC	2 cut(s)	849, 1003
BspTNI	GGTCTC	2 cut(s)	569, 767
BsrDI	GCAATG	1 cut(s)	459
BsrFI	RCCGGY	1 cut(s)	167
BssAI	RCCGGY	1 cut(s)	167
BssECI	CCNNGG	4 cut(s)	184, 425, 467, 872
BssMI	GATC	3 cut(s)	349, 841, 1008
BssNI	GRCGYC	1 cut(s)	171
BssT1I	CCWWGG	3 cut(s)	184, 467, 872
Bst4CI	ACNGT	1 cut(s)	278
Bst6I	CTCTTC	3 cut(s)	8, 198, 783
BstACI	GRCGYC	1 cut(s)	171
BstC8I	GCNNGC	4 cut(s)	73, 169, 596, 931
BstDEI	CTNAG	6 cut(s)	360, 414, 474, 488, 635, 983
BstEII	GGTNACC	1 cut(s)	53
BstFNI	CGCG	1 cut(s)	1051
BstHHI	GCGC	1 cut(s)	1051
BstKTI	GATC	3 cut(s)	352, 844, 1011
BstMAI	GTCTC	4 cut(s)	483, 569, 576, 767
BstMBI	GATC	3 cut(s)	349, 841, 1008
BstPI	GGTNACC	1 cut(s)	53
BstSCI	CCNGG	1 cut(s)	424
BstSLI	GKGCMC	1 cut(s)	821
BstUI	CGCG	1 cut(s)	1051
BstV2I	GAAGAC	2 cut(s)	204, 1025
BstX2I	RGATCY	1 cut(s)	1008
BstYI	RGATCY	1 cut(s)	1008
Bsu15I	ATCGAT	1 cut(s)	944
BsuRI	GGCC	1 cut(s)	472
BsuTUI	ATCGAT	1 cut(s)	944
BtsI	GCAGTG	1 cut(s)	705
BtsIMutI	CAGTG	3 cut(s)	411, 690, 705
Cac8I	GCNNGC	4 cut(s)	73, 169, 596, 931
CfoI	GCGC	1 cut(s)	1051
Cfr10I	RCCGGY	1 cut(s)	167
Cfr13I	GGNCC	1 cut(s)	768
ClaI	ATCGAT	1 cut(s)	944
CseI	GACGC	1 cut(s)	160
Csp6I	GTAC	2 cut(s)	23, 681
CviAII	CATG	4 cut(s)	367, 434, 761, 1003
CviQI	GTAC	2 cut(s)	23, 681
DdeI	CTNAG	6 cut(s)	360, 414, 474, 488, 635, 983
DpnI	GATC	3 cut(s)	351, 843, 1010
DpnII	GATC	3 cut(s)	349, 841, 1008
Eam1104I	CTCTTC	3 cut(s)	8, 198, 783
EarI	CTCTTC	3 cut(s)	8, 198, 783
Eco130I	CCWWGG	3 cut(s)	184, 467, 872
Eco24I	GRGCYC	1 cut(s)	157
Eco31I	GGTCTC	2 cut(s)	569, 767
Eco47I	GGWCC	1 cut(s)	768
Eco57I	CTGAAG	1 cut(s)	714
Eco91I	GGTNACC	1 cut(s)	53
EcoO65I	GGTNACC	1 cut(s)	53
EcoRI	GAATTC	1 cut(s)	991
EcoT14I	CCWWGG	3 cut(s)	184, 467, 872
EcoT38I	GRGCYC	1 cut(s)	157
ErhI	CCWWGG	3 cut(s)	184, 467, 872
Esp3I	CGTCTC	1 cut(s)	576
FaeI	CATG	4 cut(s)	370, 437, 764, 1006
FalI	AAGNNNNNCTT	2 cut(s)	195, 227
FaqI	GGGAC	1 cut(s)	124
FatI	CATG	4 cut(s)	366, 433, 760, 1002
FriOI	GRGCYC	1 cut(s)	157
FspBI	CTAG	2 cut(s)	684, 1046
GlaI	GCGC	1 cut(s)	1050
GsaI	CCCAGC	1 cut(s)	753
GsuI	CTGGAG	1 cut(s)	600
HaeIII	GGCC	1 cut(s)	472
HapII	CCGG	2 cut(s)	168, 425
HgaI	GACGC	1 cut(s)	160
HhaI	GCGC	1 cut(s)	1051
Hin1I	GRCGYC	1 cut(s)	171
Hin1II	CATG	4 cut(s)	370, 437, 764, 1006
Hin6I	GCGC	1 cut(s)	1049
HinP1I	GCGC	1 cut(s)	1049
HinfI	GANTC	3 cut(s)	430, 461, 941
HpaII	CCGG	2 cut(s)	168, 425
HphI	GGTGA	5 cut(s)	47, 80, 414, 718, 986
Hpy188I	TCNGA	6 cut(s)	35, 110, 127, 163, 282, 997
Hpy188III	TCNNGA	2 cut(s)	617, 781
HpyAV	CCTTC	5 cut(s)	130, 158, 787, 956, 981
HpyCH4III	ACNGT	1 cut(s)	278
HpyCH4V	TGCA	3 cut(s)	452, 606, 665
HpyF3I	CTNAG	6 cut(s)	360, 414, 474, 488, 635, 983
Hsp92I	GRCGYC	1 cut(s)	171
Hsp92II	CATG	4 cut(s)	370, 437, 764, 1006
HspAI	GCGC	1 cut(s)	1049
KroI	GCCGGC	1 cut(s)	167
KroNI	GCCGGC	1 cut(s)	169
Kzo9I	GATC	3 cut(s)	349, 841, 1008
LweI	GCATC	3 cut(s)	154, 439, 498
MaeI	CTAG	2 cut(s)	684, 1046
MaeIII	GTNAC	4 cut(s)	53, 172, 376, 724
MalI	GATC	3 cut(s)	351, 843, 1010
MboI	GATC	3 cut(s)	349, 841, 1008
MboII	GAAGA	7 cut(s)	19, 22, 25, 209, 215, 800, 1030
MfeI	CAATTG	1 cut(s)	714
MflI	RGATCY	1 cut(s)	1008
MhlI	GDGCHC	2 cut(s)	157, 821
MluCI	AATT	6 cut(s)	287, 714, 798, 877, 909, 991
MmeI	TCCRAC	3 cut(s)	133, 150, 196
MnlI	CCTC	9 cut(s)	86, 167, 191, 289, 304, 388, 409, 784, 964
MroNI	GCCGGC	1 cut(s)	167
MroXI	GAANNNNTTC	1 cut(s)	991
MseI	TTAA	6 cut(s)	306, 333, 542, 881, 897, 948
MspI	CCGG	2 cut(s)	168, 425
MspR9I	CCNGG	1 cut(s)	426
MunI	CAATTG	1 cut(s)	714
MvnI	CGCG	1 cut(s)	1051
NaeI	GCCGGC	1 cut(s)	169
NciI	CCSGG	1 cut(s)	426
NdeII	GATC	3 cut(s)	349, 841, 1008
NgoMIV	GCCGGC	1 cut(s)	167
NlaIII	CATG	4 cut(s)	370, 437, 764, 1006
NmuCI	GTSAC	3 cut(s)	53, 172, 724
PcsI	WCGNNNNNNNCGW	1 cut(s)	111
PdiI	GCCGGC	1 cut(s)	169
PdmI	GAANNNNTTC	1 cut(s)	991
PfeI	GAWTC	3 cut(s)	430, 461, 941
PspEI	GGTNACC	1 cut(s)	53
PspFI	CCCAGC	1 cut(s)	749
PspPI	GGNCC	1 cut(s)	768
PsuI	RGATCY	1 cut(s)	1008
RsaI	GTAC	2 cut(s)	24, 682
RsaNI	GTAC	2 cut(s)	23, 681
SaqAI	TTAA	6 cut(s)	306, 333, 542, 881, 897, 948
Sau3AI	GATC	3 cut(s)	349, 841, 1008
Sau96I	GGNCC	1 cut(s)	768
ScaI	AGTACT	1 cut(s)	24
ScrFI	CCNGG	1 cut(s)	426
SduI	GDGCHC	2 cut(s)	157, 821
SfaNI	GCATC	3 cut(s)	154, 439, 498
SinI	GGWCC	1 cut(s)	768
Sse9I	AATT	6 cut(s)	287, 714, 798, 877, 909, 991
SsiI	CCGC	1 cut(s)	293
SspMI	CTAG	2 cut(s)	684, 1046
StyD4I	CCNGG	1 cut(s)	424
StyI	CCWWGG	3 cut(s)	184, 467, 872
TaaI	ACNGT	1 cut(s)	278
TaqI	TCGA	3 cut(s)	151, 854, 944
TaqII	GACCGA	1 cut(s)	785
TasI	AATT	6 cut(s)	287, 714, 798, 877, 909, 991
TatI	WGTACW	1 cut(s)	22
TfiI	GAWTC	3 cut(s)	430, 461, 941
Tru1I	TTAA	6 cut(s)	306, 333, 542, 881, 897, 948
Tru9I	TTAA	6 cut(s)	306, 333, 542, 881, 897, 948
TscAI	CASTG	3 cut(s)	418, 697, 705
TseFI	GTSAC	3 cut(s)	53, 172, 724
Tsp45I	GTSAC	3 cut(s)	53, 172, 724
TspDTI	ATGAA	5 cut(s)	422, 546, 777, 819, 902
TspRI	CASTG	3 cut(s)	418, 697, 705
VpaK11BI	GGWCC	1 cut(s)	768
XapI	RAATTY	4 cut(s)	287, 877, 909, 991
XmnI	GAANNNNTTC	1 cut(s)	991
XspI	CTAG	2 cut(s)	684, 1046
ZrmI	AGTACT	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.