Rh6DG242600

Transport and Golgi organisation 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0002621
Physical Location & Seq
Forward (+)
42993622 .. 42995549
1928 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG242600.1

Sequence Viewer

Length: 807 bp
ATGTGTATAGCAGCGTTCGTGTGGCAGTCTCACCCACGCTACCCCTTCCTCCTCCTCCTCAACAGGGACGAATATTTCAACCGGGAAACGGCGGCTTTGCAATGGTGGGACGACACCCTCGGGATATTGGGCGGAAGAGATGCGGTGGAAGGTGGGACATGGCTGGCTTGTTCCAAGGATGGCAAGGTGGCTTTTCTCACTAATGTCAGAGAGCTCAACAGACTTGTGCAATGCAAGAGCAGAGGAGAACTCCCATCTCGTTTCTTGTCGGGCAAAAAGAGTCCGATGGAATTTGCAGAGGAAGTTGTTGAGGAGGCAGATAAGTACAATGGGTTTAACCTGATATTGGCTGATCTTCGTTCTAAGACCATGCTTTATGTAACCAACAGACCAAAGGAGGAAAAAAAGTTTATCACTGAGGTTTCACCGGGGATTCATGTATTGACAAATGATGCAATGCTTGATTCTCCTTGGCCTAAGTCTCAACGACTTGGCAATAGTTTCAAAGAGATGCTCAACAAGTATGGAGATGATGAAGTTTCGTTAAAGGAAATGGCTCTACGACTAATGACAGACGAGACCAGAGACGACAAAAGCCTGCTACCTTGCATTTATTCTCCAGAAGTAGAATACGAACTAAGTTCCATATATATTGAATATGCCCCTGCATTGGGGTATTATGGTACTAGAAGCACTGAAGCAGTGTCTGTCAATACAAATGGGGAAGTCACCTTTTATGAGAGATTTATAGCTGGGGATTGGCATGAAAGGACCGAGACCTTCCAGATTGAAGAGGGGAGTAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TANGO2

Protein Analysis

268

Amino Acids

30.74

Weight (kDa)

4.96

Isoelectric Point (pI)

40.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TANGO2 PF05742 1 - 249 2e-74 Transport and Golgi organisation 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 92, 132, 143
AcsI RAATTY 1 cut(s) 290
AcuI CTGAAG 1 cut(s) 717
AfaI GTAC 2 cut(s) 326, 685
AfiI CCNNNNNNNGG 5 cut(s) 64, 88, 346, 670, 671
AgsI TTSAA 4 cut(s) 79, 505, 656, 791
AluBI AGCT 2 cut(s) 214, 752
AluI AGCT 2 cut(s) 214, 752
Alw21I GWGCWC 1 cut(s) 216
Alw26I GTCTC 5 cut(s) 33, 486, 572, 579, 770
AlwNI CAGNNNCTG 1 cut(s) 707
Ama87I CYCGRG 1 cut(s) 119
AoxI GGCC 1 cut(s) 473
ApeKI GCWGC 1 cut(s) 11
ApoI RAATTY 1 cut(s) 290
AspS9I GGNCC 1 cut(s) 771
AsuC2I CCSGG 2 cut(s) 83, 429
AsuHPI GGTGA 3 cut(s) 23, 417, 721
AvaI CYCGRG 1 cut(s) 119
AvaII GGWCC 1 cut(s) 771
BanII GRGCYC 1 cut(s) 216
Bbv12I GWGCWC 1 cut(s) 216
BbvI GCAGC 1 cut(s) 23
BccI CCATC 3 cut(s) 173, 262, 280
BceAI ACGGC 1 cut(s) 105
BcnI CCSGG 2 cut(s) 83, 429
BcoDI GTCTC 5 cut(s) 33, 486, 572, 579, 770
BfaI CTAG 1 cut(s) 687
BisI GCNGC 2 cut(s) 12, 93
BlsI GCNGC 2 cut(s) 13, 94
Bme1390I CCNGG 2 cut(s) 83, 429
Bme18I GGWCC 1 cut(s) 771
BmeT110I CYCGRG 1 cut(s) 119
BmgT120I GGNCC 1 cut(s) 771
BmrFI CCNGG 2 cut(s) 83, 429
BmsI GCATC 3 cut(s) 130, 442, 501
BplI GAGNNNNNCTC 2 cut(s) 234, 266
BpmI CTGGAG 1 cut(s) 603
BpuMI CCSGG 2 cut(s) 83, 429
BsaI GGTCTC 2 cut(s) 572, 770
BsaJI CCNNGG 4 cut(s) 118, 174, 428, 470
Bsc4I CCNNNNNNNGG 5 cut(s) 64, 88, 346, 670, 671
Bse3DI GCAATG 3 cut(s) 107, 236, 462
BseDI CCNNGG 4 cut(s) 118, 174, 428, 470
BseGI GGATG 1 cut(s) 184
BseLI CCNNNNNNNGG 5 cut(s) 64, 88, 346, 670, 671
BseMI GCAATG 3 cut(s) 107, 236, 462
BseMII CTCAG 1 cut(s) 408
BseRI GAGGAG 5 cut(s) 41, 44, 47, 258, 326
BseXI GCAGC 1 cut(s) 23
BseYI CCCAGC 1 cut(s) 752
BshFI GGCC 1 cut(s) 475
BsiHKAI GWGCWC 1 cut(s) 216
BsiHKCI CYCGRG 1 cut(s) 119
BsiSI CCGG 2 cut(s) 82, 428
BslFI GGGAC 3 cut(s) 80, 122, 169
BslI CCNNNNNNNGG 5 cut(s) 64, 88, 346, 670, 671
BsmAI GTCTC 5 cut(s) 33, 486, 572, 579, 770
BsmBI CGTCTC 1 cut(s) 579
BsmFI GGGAC 3 cut(s) 80, 122, 169
BsnI GGCC 1 cut(s) 475
Bso31I GGTCTC 2 cut(s) 572, 770
BsoBI CYCGRG 1 cut(s) 119
Bsp1286I GDGCHC 1 cut(s) 216
Bsp143I GATC 1 cut(s) 352
BspACI CCGC 3 cut(s) 92, 132, 143
BspANI GGCC 1 cut(s) 475
BspCNI CTCAG 1 cut(s) 409
BspTNI GGTCTC 2 cut(s) 572, 770
BsrDI GCAATG 3 cut(s) 107, 236, 462
BssECI CCNNGG 4 cut(s) 118, 174, 428, 470
BssMI GATC 1 cut(s) 352
BssT1I CCWWGG 2 cut(s) 174, 470
Bst6I CTCTTC 2 cut(s) 130, 786
BstC8I GCNNGC 2 cut(s) 165, 599
BstDEI CTNAG 4 cut(s) 363, 417, 477, 638
BstF5I GGATG 1 cut(s) 184
BstKTI GATC 1 cut(s) 355
BstMAI GTCTC 5 cut(s) 33, 486, 572, 579, 770
BstMBI GATC 1 cut(s) 352
BstSCI CCNGG 2 cut(s) 81, 427
BstV1I GCAGC 1 cut(s) 23
BsuRI GGCC 1 cut(s) 475
BtsCI GGATG 1 cut(s) 184
BtsI GCAGTG 1 cut(s) 708
BtsIMutI CAGTG 3 cut(s) 414, 693, 708
Cac8I GCNNGC 2 cut(s) 165, 599
CaiI CAGNNNCTG 1 cut(s) 707
Cfr13I GGNCC 1 cut(s) 771
Csp6I GTAC 2 cut(s) 325, 684
CviAII CATG 4 cut(s) 159, 370, 437, 764
CviQI GTAC 2 cut(s) 325, 684
DdeI CTNAG 4 cut(s) 363, 417, 477, 638
DpnI GATC 1 cut(s) 354
DpnII GATC 1 cut(s) 352
Eam1104I CTCTTC 2 cut(s) 130, 786
EarI CTCTTC 2 cut(s) 130, 786
EciI GGCGGA 1 cut(s) 147
Ecl136II GAGCTC 1 cut(s) 214
Eco130I CCWWGG 2 cut(s) 174, 470
Eco24I GRGCYC 1 cut(s) 216
Eco31I GGTCTC 2 cut(s) 572, 770
Eco47I GGWCC 1 cut(s) 771
Eco53kI GAGCTC 1 cut(s) 214
Eco57I CTGAAG 1 cut(s) 717
Eco88I CYCGRG 1 cut(s) 119
EcoICRI GAGCTC 1 cut(s) 214
EcoT14I CCWWGG 2 cut(s) 174, 470
EcoT38I GRGCYC 1 cut(s) 216
ErhI CCWWGG 2 cut(s) 174, 470
Esp3I CGTCTC 1 cut(s) 579
FaeI CATG 4 cut(s) 162, 373, 440, 767
FaqI GGGAC 3 cut(s) 80, 122, 169
FatI CATG 4 cut(s) 158, 369, 436, 763
Fnu4HI GCNGC 2 cut(s) 12, 93
FokI GGATG 1 cut(s) 191
FriOI GRGCYC 1 cut(s) 216
Fsp4HI GCNGC 2 cut(s) 12, 93
FspBI CTAG 1 cut(s) 687
GluI GCNGC 2 cut(s) 12, 93
GsaI CCCAGC 1 cut(s) 756
GsuI CTGGAG 1 cut(s) 603
HaeIII GGCC 1 cut(s) 475
HapII CCGG 2 cut(s) 82, 428
Hin1II CATG 4 cut(s) 162, 373, 440, 767
HinfI GANTC 3 cut(s) 280, 433, 464
HpaII CCGG 2 cut(s) 82, 428
HphI GGTGA 3 cut(s) 23, 417, 721
Hpy188I TCNGA 2 cut(s) 209, 285
Hpy188III TCNNGA 3 cut(s) 121, 620, 784
HpyAV CCTTC 3 cut(s) 55, 143, 790
HpyCH4V TGCA 7 cut(s) 100, 229, 234, 296, 455, 609, 668
HpyF3I CTNAG 4 cut(s) 363, 417, 477, 638
Hsp92II CATG 4 cut(s) 162, 373, 440, 767
Kzo9I GATC 1 cut(s) 352
Lsp1109I GCAGC 1 cut(s) 23
LweI GCATC 3 cut(s) 130, 442, 501
MaeI CTAG 1 cut(s) 687
MaeIII GTNAC 2 cut(s) 379, 727
MalI GATC 1 cut(s) 354
MboI GATC 1 cut(s) 352
MboII GAAGA 3 cut(s) 147, 347, 803
MhlI GDGCHC 1 cut(s) 216
MluCI AATT 1 cut(s) 290
MlyI GAGTC 1 cut(s) 289
MseI TTAA 2 cut(s) 336, 545
MspI CCGG 2 cut(s) 82, 428
MspR9I CCNGG 2 cut(s) 83, 429
NciI CCSGG 2 cut(s) 83, 429
NdeII GATC 1 cut(s) 352
NlaIII CATG 4 cut(s) 162, 373, 440, 767
NmuCI GTSAC 1 cut(s) 727
PfeI GAWTC 2 cut(s) 433, 464
PkrI GCNGC 2 cut(s) 13, 94
PleI GAGTC 1 cut(s) 288
PpsI GAGTC 1 cut(s) 288
Psp124BI GAGCTC 1 cut(s) 216
PspFI CCCAGC 1 cut(s) 752
PspPI GGNCC 1 cut(s) 771
PstNI CAGNNNCTG 1 cut(s) 707
RsaI GTAC 2 cut(s) 326, 685
RsaNI GTAC 2 cut(s) 325, 684
SacI GAGCTC 1 cut(s) 216
SaqAI TTAA 2 cut(s) 336, 545
SatI GCNGC 2 cut(s) 12, 93
Sau3AI GATC 1 cut(s) 352
Sau96I GGNCC 1 cut(s) 771
SchI GAGTC 1 cut(s) 289
ScrFI CCNGG 2 cut(s) 83, 429
SduI GDGCHC 1 cut(s) 216
SetI ASST 9 cut(s) 154, 189, 216, 342, 423, 607, 734, 754, 782
SfaNI GCATC 3 cut(s) 130, 442, 501
SinI GGWCC 1 cut(s) 771
Sse9I AATT 1 cut(s) 290
SsiI CCGC 3 cut(s) 92, 132, 143
SspI AATATT 1 cut(s) 74
SspMI CTAG 1 cut(s) 687
SstI GAGCTC 1 cut(s) 216
StyD4I CCNGG 2 cut(s) 81, 427
StyI CCWWGG 2 cut(s) 174, 470
TaqII GACCGA 1 cut(s) 788
TasI AATT 1 cut(s) 290
TatI WGTACW 1 cut(s) 324
TauI GCSGC 1 cut(s) 95
TfiI GAWTC 2 cut(s) 433, 464
Tru1I TTAA 2 cut(s) 336, 545
Tru9I TTAA 2 cut(s) 336, 545
TscAI CASTG 3 cut(s) 421, 700, 708
TseFI GTSAC 1 cut(s) 727
TseI GCWGC 1 cut(s) 11
Tsp45I GTSAC 1 cut(s) 727
TspDTI ATGAA 3 cut(s) 425, 549, 780
TspRI CASTG 3 cut(s) 421, 700, 708
VpaK11BI GGWCC 1 cut(s) 771
XapI RAATTY 1 cut(s) 290
XspI CTAG 1 cut(s) 687
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.