FvH4_2g16710

Transport and Golgi organisation 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0002621
Physical Location & Seq
Forward (+)
14574282 .. 14578479
4198 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g16710.t3

Sequence Viewer

Length: 810 bp
ATGTGTATAGCGGCGTTCGTGTGGCAGTGTCACCCACGCTACCCTTTCCTCCTCCTGCTCAACCGAGACGAATATTTCAACCGGGGAACGGCTCCGTTGGCTTGGTGGGATGACAACAACAGGATTTTGGGTGGAAGAGATGCGGTGGAAGGTGGGACATGGATGGCTTGTTCCAAGGATGGTAAAGTGGCGCTTCTCACTAATGTCAGAGAGCTCAAGAGACTTGAGAAATGCAAGAGCAGAGGACATCTCCCATCTCGTTTCTTATCGGGAAAAAAGAGTCCGATGGAGTTCGCAGAGGAAGTTGTTGAGGAGGCAGATCAGTACAACGGTTTTAATCTGATATTGGCTGATCTTCGTTCTAAGACCATGCTTTATGTAACCAACAGACCAAAGGAAGAAAAAAAGTTTGTCACTGAGGTTTCACCGGGGATTCATGTATTGACAAATGATGCAATGCTTGATTCTCCTTGGCCTAAGTCTCAACGACTTGGCAATAGTTTCAAAGAGGTGCTAAACAAGTACGGAGATGATGAAGTTTCGTTAAAGGAAATGGCTGTACAACTAATGACAGACACGACTAGAGATGACAGAAGCCTGCTACCTTGCATTTATTCTCCAGAAGTAGAATATGAACTAAGTTCCATATTTATTGCTTATGCCCGTGAATTGGGTTGTTATGGTACTAGAAGCACTGATGCTGTGTCTGTCAATACAACTGGGGAAGTCACCTTTTATGAGAGATACATAGCTGGGGATTGGTATGAAAGGACCGAGACCTTCCTGATGAATGAGACGGAAAATGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TANGO2

Protein Analysis

270

Amino Acids

30.9

Weight (kDa)

5.1

Isoelectric Point (pI)

35.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TANGO2 PF05742 1 - 250 4.7e-75 Transport and Golgi organisation 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 11, 143
AfaI GTAC 4 cut(s) 326, 524, 561, 685
AfiI CCNNNNNNNGG 2 cut(s) 88, 670
AgsI TTSAA 2 cut(s) 79, 505
AloI GAACNNNNNNTCC 2 cut(s) 154, 186
AluBI AGCT 2 cut(s) 214, 752
AluI AGCT 2 cut(s) 214, 752
Alw21I GWGCWC 1 cut(s) 216
Alw26I GTCTC 5 cut(s) 60, 214, 486, 770, 788
AoxI GGCC 1 cut(s) 473
AspLEI GCGC 1 cut(s) 193
AspS9I GGNCC 1 cut(s) 771
AsuC2I CCSGG 2 cut(s) 83, 429
AsuHPI GGTGA 3 cut(s) 23, 417, 721
AvaII GGWCC 1 cut(s) 771
BanII GRGCYC 1 cut(s) 216
Bbv12I GWGCWC 1 cut(s) 216
BccI CCATC 4 cut(s) 157, 173, 262, 280
BceAI ACGGC 1 cut(s) 105
BcnI CCSGG 2 cut(s) 83, 429
BcoDI GTCTC 5 cut(s) 60, 214, 486, 770, 788
BfaI CTAG 2 cut(s) 582, 687
BfoI RGCGCY 1 cut(s) 194
BisI GCNGC 1 cut(s) 12
BlsI GCNGC 1 cut(s) 13
Bme1390I CCNGG 2 cut(s) 83, 429
Bme18I GGWCC 1 cut(s) 771
BmgT120I GGNCC 1 cut(s) 771
BmiI GGNNCC 1 cut(s) 93
BmrFI CCNGG 2 cut(s) 83, 429
BmrI ACTGGG 1 cut(s) 729
BmsI GCATC 3 cut(s) 130, 442, 688
BmuI ACTGGG 1 cut(s) 729
BplI GAGNNNNNCTC 2 cut(s) 234, 266
BpmI CTGGAG 1 cut(s) 603
BpuEI CTTGAG 2 cut(s) 200, 245
BpuMI CCSGG 2 cut(s) 83, 429
BsaI GGTCTC 1 cut(s) 770
BsaJI CCNNGG 4 cut(s) 82, 174, 428, 470
Bsc4I CCNNNNNNNGG 2 cut(s) 88, 670
Bse1I ACTGG 1 cut(s) 724
Bse3DI GCAATG 1 cut(s) 462
BseDI CCNNGG 4 cut(s) 82, 174, 428, 470
BseGI GGATG 3 cut(s) 115, 168, 184
BseLI CCNNNNNNNGG 2 cut(s) 88, 670
BseMI GCAATG 1 cut(s) 462
BseMII CTCAG 1 cut(s) 408
BseNI ACTGG 1 cut(s) 724
BseRI GAGGAG 2 cut(s) 41, 326
BseYI CCCAGC 1 cut(s) 752
BshFI GGCC 1 cut(s) 475
BsiHKAI GWGCWC 1 cut(s) 216
BsiSI CCGG 2 cut(s) 82, 428
BslFI GGGAC 1 cut(s) 169
BslI CCNNNNNNNGG 2 cut(s) 88, 670
BsmAI GTCTC 5 cut(s) 60, 214, 486, 770, 788
BsmBI CGTCTC 2 cut(s) 60, 788
BsmFI GGGAC 1 cut(s) 169
BsnI GGCC 1 cut(s) 475
Bso31I GGTCTC 1 cut(s) 770
Bsp1286I GDGCHC 1 cut(s) 216
Bsp1407I TGTACA 1 cut(s) 559
Bsp143I GATC 2 cut(s) 319, 352
BspACI CCGC 2 cut(s) 11, 143
BspANI GGCC 1 cut(s) 475
BspCNI CTCAG 1 cut(s) 409
BspLI GGNNCC 1 cut(s) 93
BspTNI GGTCTC 1 cut(s) 770
BsrDI GCAATG 1 cut(s) 462
BsrGI TGTACA 1 cut(s) 559
BsrI ACTGG 1 cut(s) 724
BssECI CCNNGG 4 cut(s) 82, 174, 428, 470
BssMI GATC 2 cut(s) 319, 352
BssT1I CCWWGG 2 cut(s) 174, 470
Bst4CI ACNGT 1 cut(s) 332
Bst6I CTCTTC 1 cut(s) 130
BstAUI TGTACA 1 cut(s) 559
BstC8I GCNNGC 1 cut(s) 599
BstDEI CTNAG 4 cut(s) 363, 417, 477, 638
BstF5I GGATG 3 cut(s) 115, 168, 184
BstH2I RGCGCY 1 cut(s) 194
BstHHI GCGC 1 cut(s) 193
BstKTI GATC 2 cut(s) 322, 355
BstMAI GTCTC 5 cut(s) 60, 214, 486, 770, 788
BstMBI GATC 2 cut(s) 319, 352
BstMWI GCNNNNNNNGC 1 cut(s) 98
BstSCI CCNGG 2 cut(s) 81, 427
BsuRI GGCC 1 cut(s) 475
BtsCI GGATG 3 cut(s) 115, 168, 184
BtsI GCAGTG 1 cut(s) 32
BtsIMutI CAGTG 3 cut(s) 32, 414, 693
Cac8I GCNNGC 1 cut(s) 599
CfoI GCGC 1 cut(s) 193
Cfr13I GGNCC 1 cut(s) 771
Csp6I GTAC 4 cut(s) 325, 523, 560, 684
CviAII CATG 3 cut(s) 159, 370, 437
CviJI RGCY 9 cut(s) 92, 101, 167, 214, 350, 475, 557, 597, 752
CviKI_1 RGCY 9 cut(s) 92, 101, 167, 214, 350, 475, 557, 597, 752
CviQI GTAC 4 cut(s) 325, 523, 560, 684
DdeI CTNAG 4 cut(s) 363, 417, 477, 638
DpnI GATC 2 cut(s) 321, 354
DpnII GATC 2 cut(s) 319, 352
Eam1104I CTCTTC 1 cut(s) 130
EarI CTCTTC 1 cut(s) 130
Ecl136II GAGCTC 1 cut(s) 214
Eco130I CCWWGG 2 cut(s) 174, 470
Eco24I GRGCYC 1 cut(s) 216
Eco31I GGTCTC 1 cut(s) 770
Eco47I GGWCC 1 cut(s) 771
Eco53kI GAGCTC 1 cut(s) 214
EcoICRI GAGCTC 1 cut(s) 214
EcoT14I CCWWGG 2 cut(s) 174, 470
EcoT38I GRGCYC 1 cut(s) 216
ErhI CCWWGG 2 cut(s) 174, 470
Esp3I CGTCTC 2 cut(s) 60, 788
FaeI CATG 3 cut(s) 162, 373, 440
FalI AAGNNNNNCTT 2 cut(s) 177, 209
FaqI GGGAC 1 cut(s) 169
FatI CATG 3 cut(s) 158, 369, 436
Fnu4HI GCNGC 1 cut(s) 12
FokI GGATG 3 cut(s) 122, 175, 191
FriOI GRGCYC 1 cut(s) 216
Fsp4HI GCNGC 1 cut(s) 12
FspBI CTAG 2 cut(s) 582, 687
GlaI GCGC 1 cut(s) 192
GluI GCNGC 1 cut(s) 12
GsaI CCCAGC 1 cut(s) 756
GsuI CTGGAG 1 cut(s) 603
HaeII RGCGCY 1 cut(s) 194
HaeIII GGCC 1 cut(s) 475
HapII CCGG 2 cut(s) 82, 428
HhaI GCGC 1 cut(s) 193
Hin1II CATG 3 cut(s) 162, 373, 440
Hin6I GCGC 1 cut(s) 191
HinP1I GCGC 1 cut(s) 191
HinfI GANTC 3 cut(s) 280, 433, 464
HpaII CCGG 2 cut(s) 82, 428
HphI GGTGA 3 cut(s) 23, 417, 721
Hpy188I TCNGA 3 cut(s) 209, 285, 342
Hpy188III TCNNGA 4 cut(s) 217, 270, 620, 784
HpyAV CCTTC 2 cut(s) 143, 790
HpyCH4III ACNGT 1 cut(s) 332
HpyCH4V TGCA 3 cut(s) 234, 455, 609
HpyF10VI GCNNNNNNNGC 1 cut(s) 98
HpyF3I CTNAG 4 cut(s) 363, 417, 477, 638
Hsp92II CATG 3 cut(s) 162, 373, 440
HspAI GCGC 1 cut(s) 191
Kzo9I GATC 2 cut(s) 319, 352
LmnI GCTCC 1 cut(s) 97
LpnPI CCDG 9 cut(s) 68, 95, 106, 441, 611, 633, 705, 738, 797
LweI GCATC 3 cut(s) 130, 442, 688
MaeI CTAG 2 cut(s) 582, 687
MaeIII GTNAC 4 cut(s) 29, 379, 412, 727
MalI GATC 2 cut(s) 321, 354
MboI GATC 2 cut(s) 319, 352
MboII GAAGA 3 cut(s) 147, 347, 410
MhlI GDGCHC 1 cut(s) 216
MluCI AATT 1 cut(s) 668
MlyI GAGTC 1 cut(s) 289
MnlI CCTC 8 cut(s) 59, 62, 236, 292, 304, 307, 412, 502
MseI TTAA 2 cut(s) 336, 545
MspI CCGG 2 cut(s) 82, 428
MspR9I CCNGG 2 cut(s) 83, 429
MwoI GCNNNNNNNGC 1 cut(s) 98
NciI CCSGG 2 cut(s) 83, 429
NdeII GATC 2 cut(s) 319, 352
NlaIII CATG 3 cut(s) 162, 373, 440
NlaIV GGNNCC 1 cut(s) 93
NmuCI GTSAC 3 cut(s) 29, 412, 727
PfeI GAWTC 2 cut(s) 433, 464
PkrI GCNGC 1 cut(s) 13
PleI GAGTC 1 cut(s) 288
PpsI GAGTC 1 cut(s) 288
Psp124BI GAGCTC 1 cut(s) 216
PspFI CCCAGC 1 cut(s) 752
PspN4I GGNNCC 1 cut(s) 93
PspPI GGNCC 1 cut(s) 771
RsaI GTAC 4 cut(s) 326, 524, 561, 685
RsaNI GTAC 4 cut(s) 325, 523, 560, 684
SacI GAGCTC 1 cut(s) 216
SaqAI TTAA 2 cut(s) 336, 545
SatI GCNGC 1 cut(s) 12
Sau3AI GATC 2 cut(s) 319, 352
Sau96I GGNCC 1 cut(s) 771
SchI GAGTC 1 cut(s) 289
ScrFI CCNGG 2 cut(s) 83, 429
SduI GDGCHC 1 cut(s) 216
SetI ASST 8 cut(s) 154, 216, 423, 513, 607, 734, 754, 782
SfaNI GCATC 3 cut(s) 130, 442, 688
SinI GGWCC 1 cut(s) 771
SmlI CTYRAG 2 cut(s) 215, 224
SmoI CTYRAG 2 cut(s) 215, 224
Sse9I AATT 1 cut(s) 668
SsiI CCGC 2 cut(s) 11, 143
SspI AATATT 1 cut(s) 74
SspMI CTAG 2 cut(s) 582, 687
SstI GAGCTC 1 cut(s) 216
StyD4I CCNGG 2 cut(s) 81, 427
StyI CCWWGG 2 cut(s) 174, 470
TaaI ACNGT 1 cut(s) 332
TaqII GACCGA 1 cut(s) 788
TasI AATT 1 cut(s) 668
TatI WGTACW 2 cut(s) 324, 559
TauI GCSGC 1 cut(s) 14
TfiI GAWTC 2 cut(s) 433, 464
Tru1I TTAA 2 cut(s) 336, 545
Tru9I TTAA 2 cut(s) 336, 545
TscAI CASTG 3 cut(s) 32, 421, 700
TseFI GTSAC 3 cut(s) 29, 412, 727
Tsp45I GTSAC 3 cut(s) 29, 412, 727
TspDTI ATGAA 5 cut(s) 425, 549, 648, 780, 803
TspGWI ACGGA 2 cut(s) 84, 540
TspRI CASTG 3 cut(s) 32, 421, 700
VpaK11BI GGWCC 1 cut(s) 771
XspI CTAG 2 cut(s) 582, 687
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.