Rmu_sc0007602.1_g000001

Transport and Golgi organization 2 homolog

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007602.1
Physical Location & Seq
Reverse (-)
5720 .. 9600
3881 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007602.1_g000001.1.cds

Sequence Viewer

Length: 1497 bp
atgtccagaagtatacctaagattaggattttgctcttggagccctctcttagaggtgtgactataattggattccagaatatgctctgttcccacagatctcgaattatagttcttcacaaggatgttgtcatgcctttcagcgacattcacagctccaataagctcatgaaaccttgtgatccattctgtggtaacatccattcgatagttcttagcaaccatcaatgcagagacggggaaggttggtgcagggtagttgcggaggcgtgcggggctgctgcagggcttgtgcaagggctgtgcggagggtgtgcagggcctgtcggcaggtgtgtgcggggctgtcggcaggtgtgtgcgaggctgtcgacaggggcaggcactcgtctcggcaggtctcggcagatgcaggcacaaggctcgacaagagcaggcactcatctcggcaggtctcggcagatgcaggcacaaggctcggcaggggcaggcactcgtctcggcagctctcggcaattgctcggcagggctcgcaggggcaggcacaagactcggcaggtctcggcagttccttggcagagctcgcaggggcaggcacaaggcaagggccggtccgatttttccgacagccggttcaggggttttcaggccggttccggtggttccgccgccggttctgggctccttgggaatagggcaggcaaagcagtgttcatatggcaagaccacccattgtaccctctccttctcttgcaaaacagagatgaataccacaacaggcctacgaagccggtaggatggtgggaaggttgtgagatattaggcgggagagatgaggttgcaggagggacatggctggcttgttcaagaggagggagagttgctttgcttacaaacgtgctcgagcttcatacctcaccggaggcaaagagccggggagacgtgcctgtgcttttcttagagagcttgaagagtccaaaagaatttgcacaagagttggttaaagaggctcaccagtataatgggtttaacctgttattggcagatcttcaatccaaaaccatggtttacctctccaacagaccaaagggggagcctattctcattcaagaggtttctccaggcattcatgtgctttccaatgcaaagcttgactcaccctggcacaaggctcagcgcttgcggctaaattttcagaaagagcttatcaagtatggagaaggtgaaataccagtgaaggaactgatccaaaaactaatgaaggacaaagttaaagctgataaaagcaaattacctcgtatatgtgaactggactgggagtataaactgagctccatatttgttgaagctgacactccactgggacgctacggcaccaggagcagtgctgcagtgtcagtaagacaaaatgggagcctgagtttttatgagagctatcttgataatggcatttggaaggaaaggactgtgaattaccaaattcagaagctgaaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

498

Amino Acids

54.82

Weight (kDa)

9.86

Isoelectric Point (pI)

40.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 321, 343
Acc36I ACCTGC 5 cut(s) 321, 343, 387, 441, 547
AccB1I GGYRCC 1 cut(s) 1373
AccB7I CCANNNNNTGG 1 cut(s) 191
AccI GTMKAC 2 cut(s) 13, 371
AciI CCGC 8 cut(s) 263, 273, 306, 340, 666, 669, 825, 1183
AclWI GGATC 2 cut(s) 176, 1240
AcsI RAATTY 3 cut(s) 983, 1189, 1479
AfaI GTAC 1 cut(s) 737
AfeI AGCGCT 1 cut(s) 1178
AfiI CCNNNNNNNGG 5 cut(s) 191, 630, 637, 678, 1039
AgsI TTSAA 5 cut(s) 867, 970, 1052, 1109, 1346
AjiI CACGTC 1 cut(s) 943
AjnI CCWGG 3 cut(s) 1120, 1160, 1376
Alw21I GWGCWC 3 cut(s) 584, 903, 1334
Alw26I GTCTC 7 cut(s) 228, 395, 405, 459, 503, 565, 933
AlwI GGATC 2 cut(s) 176, 1240
AlwNI CAGNNNCTG 2 cut(s) 323, 1489
Ama87I CYCGRG 1 cut(s) 902
Aor51HI AGCGCT 1 cut(s) 1178
AoxI GGCC 4 cut(s) 320, 607, 648, 779
ApeKI GCWGC 4 cut(s) 278, 281, 504, 1388
ApoI RAATTY 3 cut(s) 983, 1189, 1479
AspLEI GCGC 1 cut(s) 1179
AspS9I GGNCC 3 cut(s) 320, 607, 612
AsuC2I CCSGG 1 cut(s) 935
AsuHPI GGTGA 4 cut(s) 909, 1004, 1149, 1235
AvaI CYCGRG 1 cut(s) 902
AvaII GGWCC 1 cut(s) 612
BanI GGYRCC 1 cut(s) 1373
BanII GRGCYC 5 cut(s) 45, 532, 584, 684, 1334
BarI GAAGNNNNNNTAC 2 cut(s) 1212, 1244
Bbv12I GWGCWC 3 cut(s) 584, 903, 1334
BbvI GCAGC 4 cut(s) 265, 268, 516, 1375
BccI CCATC 2 cut(s) 231, 792
BceAI ACGGC 1 cut(s) 1387
BciT130I CCWGG 3 cut(s) 1122, 1162, 1378
BcnI CCSGG 1 cut(s) 935
BcoDI GTCTC 7 cut(s) 228, 395, 405, 459, 503, 565, 933
BfmI CTRYAG 2 cut(s) 282, 1389
BfoI RGCGCY 1 cut(s) 1180
BfuAI ACCTGC 5 cut(s) 321, 343, 387, 441, 547
BglII AGATCT 2 cut(s) 98, 1045
BisI GCNGC 6 cut(s) 279, 282, 505, 669, 1184, 1389
BlpI GCTNAGC 1 cut(s) 1173
BlsI GCNGC 6 cut(s) 280, 283, 506, 670, 1185, 1390
Bme1390I CCNGG 4 cut(s) 935, 1122, 1162, 1378
Bme18I GGWCC 1 cut(s) 612
BmeT110I CYCGRG 1 cut(s) 902
BmgBI CACGTC 1 cut(s) 943
BmgT120I GGNCC 3 cut(s) 320, 607, 612
BmiI GGNNCC 7 cut(s) 42, 655, 664, 683, 1095, 1375, 1415
BmrFI CCNGG 4 cut(s) 935, 1122, 1162, 1378
BmrI ACTGGG 2 cut(s) 1324, 1370
BmsI GCATC 2 cut(s) 399, 453
BmuI ACTGGG 2 cut(s) 1324, 1370
BpmI CTGGAG 1 cut(s) 1104
Bpu1102I GCTNAGC 1 cut(s) 1173
BpuMI CCSGG 1 cut(s) 935
BsaI GGTCTC 3 cut(s) 405, 459, 565
BsaJI CCNNGG 5 cut(s) 572, 685, 934, 1062, 1160
BsaWI WCCGGW 2 cut(s) 656, 919
BsaXI ACNNNNNCTCC 4 cut(s) 864, 894, 1405, 1435
Bsc4I CCNNNNNNNGG 5 cut(s) 191, 630, 637, 678, 1039
Bse118I RCCGGY 5 cut(s) 609, 630, 650, 671, 790
Bse1I ACTGG 5 cut(s) 1015, 1232, 1314, 1319, 1365
BseBI CCWGG 3 cut(s) 1122, 1162, 1378
BseDI CCNNGG 5 cut(s) 572, 685, 934, 1062, 1160
BseGI GGATG 3 cut(s) 130, 198, 803
BseLI CCNNNNNNNGG 5 cut(s) 191, 630, 637, 678, 1039
BseMII CTCAG 3 cut(s) 1187, 1319, 1409
BseNI ACTGG 5 cut(s) 1015, 1232, 1314, 1319, 1365
BseRI GAGGAG 1 cut(s) 885
BseXI GCAGC 4 cut(s) 265, 268, 516, 1375
BsgI GTGCAG 2 cut(s) 271, 336
BshFI GGCC 4 cut(s) 322, 609, 650, 781
BshNI GGYRCC 1 cut(s) 1373
BsiHKAI GWGCWC 3 cut(s) 584, 903, 1334
BsiHKCI CYCGRG 1 cut(s) 902
BsiSI CCGG 8 cut(s) 610, 631, 651, 657, 672, 791, 920, 934
BslFI GGGAC 2 cut(s) 862, 1377
BslI CCNNNNNNNGG 5 cut(s) 191, 630, 637, 678, 1039
BsmAI GTCTC 7 cut(s) 228, 395, 405, 459, 503, 565, 933
BsmBI CGTCTC 4 cut(s) 228, 395, 503, 933
BsmFI GGGAC 2 cut(s) 862, 1377
BsmI GAATGC 1 cut(s) 1125
BsnI GGCC 4 cut(s) 322, 609, 650, 781
Bso31I GGTCTC 3 cut(s) 405, 459, 565
BsoBI CYCGRG 1 cut(s) 902
Bsp1286I GDGCHC 6 cut(s) 45, 532, 584, 684, 903, 1334
Bsp143I GATC 4 cut(s) 98, 181, 1045, 1245
Bsp1720I GCTNAGC 1 cut(s) 1173
Bsp19I CCATGG 1 cut(s) 1062
BspACI CCGC 8 cut(s) 263, 273, 306, 340, 666, 669, 825, 1183
BspANI GGCC 4 cut(s) 322, 609, 650, 781
BspCNI CTCAG 3 cut(s) 1186, 1320, 1410
BspHI TCATGA 1 cut(s) 168
BspLI GGNNCC 7 cut(s) 42, 655, 664, 683, 1095, 1375, 1415
BspMAI CTGCAG 2 cut(s) 286, 1393
BspMI ACCTGC 5 cut(s) 321, 343, 387, 441, 547
BspPI GGATC 2 cut(s) 176, 1240
BspT107I GGYRCC 1 cut(s) 1373
BspTNI GGTCTC 3 cut(s) 405, 459, 565
BsrFI RCCGGY 5 cut(s) 609, 630, 650, 671, 790
BsrI ACTGG 5 cut(s) 1015, 1232, 1314, 1319, 1365
BssAI RCCGGY 5 cut(s) 609, 630, 650, 671, 790
BssECI CCNNGG 5 cut(s) 572, 685, 934, 1062, 1160
BssMI GATC 4 cut(s) 98, 181, 1045, 1245
BssNAI GTATAC 1 cut(s) 14
BssT1I CCWWGG 3 cut(s) 572, 685, 1062
Bst1107I GTATAC 1 cut(s) 14
Bst2UI CCWGG 3 cut(s) 1122, 1162, 1378
Bst4CI ACNGT 1 cut(s) 1468
Bst6I CTCTTC 1 cut(s) 965
BstDEI CTNAG 7 cut(s) 18, 50, 215, 958, 1173, 1328, 1418
BstDSI CCRYGG 1 cut(s) 1062
BstF5I GGATG 3 cut(s) 130, 198, 803
BstH2I RGCGCY 1 cut(s) 1180
BstHHI GCGC 1 cut(s) 1179
BstKTI GATC 4 cut(s) 101, 184, 1048, 1248
BstMAI GTCTC 7 cut(s) 228, 395, 405, 459, 503, 565, 933
BstMBI GATC 4 cut(s) 98, 181, 1045, 1245
BstMWI GCNNNNNNNGC 8 cut(s) 40, 275, 531, 583, 704, 787, 1183, 1380
BstNI CCWGG 3 cut(s) 1122, 1162, 1378
BstSCI CCNGG 4 cut(s) 933, 1120, 1160, 1376
BstSFI CTRYAG 2 cut(s) 282, 1389
BstV1I GCAGC 4 cut(s) 265, 268, 516, 1375
BstX2I RGATCY 2 cut(s) 98, 1045
BstXI CCANNNNNNTGG 2 cut(s) 1022, 1063
BstYI RGATCY 2 cut(s) 98, 1045
BstZ17I GTATAC 1 cut(s) 14
BsuRI GGCC 4 cut(s) 322, 609, 650, 781
BtgI CCRYGG 1 cut(s) 1062
BtrI CACGTC 1 cut(s) 943
BtsCI GGATG 3 cut(s) 130, 198, 803
BtsI GCAGTG 3 cut(s) 714, 1390, 1398
BtsIMutI CAGTG 5 cut(s) 714, 1239, 1358, 1390, 1398
BveI ACCTGC 5 cut(s) 321, 343, 387, 441, 547
CaiI CAGNNNCTG 2 cut(s) 323, 1489
CciI TCATGA 1 cut(s) 168
CfoI GCGC 1 cut(s) 1179
Cfr10I RCCGGY 5 cut(s) 609, 630, 650, 671, 790
Cfr13I GGNCC 3 cut(s) 320, 607, 612
CpoI CGGWCCG 1 cut(s) 612
CseI GACGC 1 cut(s) 1374
Csp6I GTAC 1 cut(s) 736
CspI CGGWCCG 1 cut(s) 612
CviAII CATG 5 cut(s) 133, 169, 852, 1063, 1130
CviQI GTAC 1 cut(s) 736
DdeI CTNAG 7 cut(s) 18, 50, 215, 958, 1173, 1328, 1418
DpnI GATC 4 cut(s) 100, 183, 1047, 1247
DpnII GATC 4 cut(s) 98, 181, 1045, 1245
Eam1104I CTCTTC 1 cut(s) 965
EarI CTCTTC 1 cut(s) 965
EciI GGCGGA 1 cut(s) 655
Ecl136II GAGCTC 2 cut(s) 582, 1332
Eco130I CCWWGG 3 cut(s) 572, 685, 1062
Eco147I AGGCCT 1 cut(s) 781
Eco24I GRGCYC 5 cut(s) 45, 532, 584, 684, 1334
Eco31I GGTCTC 3 cut(s) 405, 459, 565
Eco47I GGWCC 1 cut(s) 612
Eco47III AGCGCT 1 cut(s) 1178
Eco53kI GAGCTC 2 cut(s) 582, 1332
Eco88I CYCGRG 1 cut(s) 902
EcoICRI GAGCTC 2 cut(s) 582, 1332
EcoO109I RGGNCCY 1 cut(s) 320
EcoRII CCWGG 3 cut(s) 1120, 1160, 1376
EcoT14I CCWWGG 3 cut(s) 572, 685, 1062
EcoT38I GRGCYC 5 cut(s) 45, 532, 584, 684, 1334
ErhI CCWWGG 3 cut(s) 572, 685, 1062
Esp3I CGTCTC 4 cut(s) 228, 395, 503, 933
FaeI CATG 5 cut(s) 136, 172, 855, 1066, 1133
FaqI GGGAC 2 cut(s) 862, 1377
FatI CATG 5 cut(s) 132, 168, 851, 1062, 1129
FauI CCCGC 3 cut(s) 266, 333, 818
FauNDI CATATG 1 cut(s) 716
FblI GTMKAC 2 cut(s) 13, 371
Fnu4HI GCNGC 6 cut(s) 279, 282, 505, 669, 1184, 1389
FokI GGATG 3 cut(s) 137, 185, 810
FriOI GRGCYC 5 cut(s) 45, 532, 584, 684, 1334
Fsp4HI GCNGC 6 cut(s) 279, 282, 505, 669, 1184, 1389
GlaI GCGC 1 cut(s) 1178
GluI GCNGC 6 cut(s) 279, 282, 505, 669, 1184, 1389
GsuI CTGGAG 1 cut(s) 1104
HaeII RGCGCY 1 cut(s) 1180
HaeIII GGCC 4 cut(s) 322, 609, 650, 781
HapII CCGG 8 cut(s) 610, 631, 651, 657, 672, 791, 920, 934
HgaI GACGC 1 cut(s) 1374
HhaI GCGC 1 cut(s) 1179
Hin1II CATG 5 cut(s) 136, 172, 855, 1066, 1133
Hin6I GCGC 1 cut(s) 1177
HinP1I GCGC 1 cut(s) 1177
HincII GTYRAC 1 cut(s) 372
HindII GTYRAC 1 cut(s) 372
HindIII AAGCTT 1 cut(s) 1148
HinfI GANTC 4 cut(s) 72, 550, 973, 1154
HpaII CCGG 8 cut(s) 610, 631, 651, 657, 672, 791, 920, 934
HphI GGTGA 4 cut(s) 909, 1004, 1149, 1235
Hpy166II GTNNAC 4 cut(s) 14, 372, 1069, 1307
Hpy188I TCNGA 4 cut(s) 616, 625, 1197, 1485
Hpy188III TCNNGA 7 cut(s) 6, 76, 102, 169, 867, 1109, 1439
Hpy8I GTNNAC 4 cut(s) 14, 372, 1069, 1307
HpyAV CCTTC 7 cut(s) 236, 755, 800, 1214, 1231, 1255, 1450
HpyCH4III ACNGT 1 cut(s) 1468
HpyCH4IV ACGT 2 cut(s) 897, 942
HpyF10VI GCNNNNNNNGC 8 cut(s) 40, 275, 531, 583, 704, 787, 1183, 1380
HpyF3I CTNAG 7 cut(s) 18, 50, 215, 958, 1173, 1328, 1418
HpySE526I ACGT 2 cut(s) 897, 942
Hsp92II CATG 5 cut(s) 136, 172, 855, 1066, 1133
HspAI GCGC 1 cut(s) 1177
Kzo9I GATC 4 cut(s) 98, 181, 1045, 1245
LmnI GCTCC 7 cut(s) 40, 161, 687, 1093, 1337, 1380, 1413
Lsp1109I GCAGC 4 cut(s) 265, 268, 516, 1375
LweI GCATC 2 cut(s) 399, 453
MaeII ACGT 2 cut(s) 897, 942
MaeIII GTNAC 2 cut(s) 58, 194
MalI GATC 4 cut(s) 100, 183, 1047, 1247
MboI GATC 4 cut(s) 98, 181, 1045, 1245
MboII GAAGA 3 cut(s) 107, 982, 1040
MfeI CAATTG 1 cut(s) 515
MflI RGATCY 2 cut(s) 98, 1045
MhlI GDGCHC 6 cut(s) 45, 532, 584, 684, 903, 1334
MluCI AATT 8 cut(s) 66, 105, 515, 983, 1189, 1289, 1471, 1479
MlyI GAGTC 3 cut(s) 544, 982, 1148
MmeI TCCRAC 2 cut(s) 648, 1101
MseI TTAA 3 cut(s) 1002, 1029, 1272
MslI CAYNNNNRTG 2 cut(s) 123, 1130
MspI CCGG 8 cut(s) 610, 631, 651, 657, 672, 791, 920, 934
MspR9I CCNGG 4 cut(s) 935, 1122, 1162, 1378
MunI CAATTG 1 cut(s) 515
Mva1269I GAATGC 1 cut(s) 1125
MvaI CCWGG 3 cut(s) 1122, 1162, 1378
MwoI GCNNNNNNNGC 8 cut(s) 40, 275, 531, 583, 704, 787, 1183, 1380
NciI CCSGG 1 cut(s) 935
NcoI CCATGG 1 cut(s) 1062
NdeI CATATG 1 cut(s) 716
NdeII GATC 4 cut(s) 98, 181, 1045, 1245
NlaIII CATG 5 cut(s) 136, 172, 855, 1066, 1133
NlaIV GGNNCC 7 cut(s) 42, 655, 664, 683, 1095, 1375, 1415
NmuCI GTSAC 1 cut(s) 58
PaeR7I CTCGAG 1 cut(s) 902
PagI TCATGA 1 cut(s) 168
PaqCI CACCTGC 2 cut(s) 321, 343
PceI AGGCCT 1 cut(s) 781
PctI GAATGC 1 cut(s) 1125
PfeI GAWTC 1 cut(s) 72
PflMI CCANNNNNTGG 1 cut(s) 191
PkrI GCNGC 6 cut(s) 280, 283, 506, 670, 1185, 1390
PleI GAGTC 3 cut(s) 544, 981, 1148
PpsI GAGTC 3 cut(s) 544, 981, 1148
Psp124BI GAGCTC 2 cut(s) 584, 1334
Psp6I CCWGG 3 cut(s) 1120, 1160, 1376
PspGI CCWGG 3 cut(s) 1120, 1160, 1376
PspN4I GGNNCC 7 cut(s) 42, 655, 664, 683, 1095, 1375, 1415
PspPI GGNCC 3 cut(s) 320, 607, 612
PspXI VCTCGAGB 1 cut(s) 902
PstI CTGCAG 2 cut(s) 286, 1393
PstNI CAGNNNCTG 2 cut(s) 323, 1489
PsuI RGATCY 2 cut(s) 98, 1045
RsaI GTAC 1 cut(s) 737
RsaNI GTAC 1 cut(s) 736
RseI CAYNNNNRTG 2 cut(s) 123, 1130
Rsr2I CGGWCCG 1 cut(s) 612
RsrII CGGWCCG 1 cut(s) 612
SacI GAGCTC 2 cut(s) 584, 1334
SalI GTCGAC 1 cut(s) 370
SaqAI TTAA 3 cut(s) 1002, 1029, 1272
SatI GCNGC 6 cut(s) 279, 282, 505, 669, 1184, 1389
Sau3AI GATC 4 cut(s) 98, 181, 1045, 1245
Sau96I GGNCC 3 cut(s) 320, 607, 612
SchI GAGTC 3 cut(s) 544, 982, 1148
ScrFI CCNGG 4 cut(s) 935, 1122, 1162, 1378
SduI GDGCHC 6 cut(s) 45, 532, 584, 684, 903, 1334
SfaNI GCATC 2 cut(s) 399, 453
SfcI CTRYAG 2 cut(s) 282, 1389
Sfr274I CTCGAG 1 cut(s) 902
SinI GGWCC 1 cut(s) 612
SlaI CTCGAG 1 cut(s) 902
SmiMI CAYNNNNRTG 2 cut(s) 123, 1130
SmlI CTYRAG 1 cut(s) 902
SmoI CTYRAG 1 cut(s) 902
Sse9I AATT 8 cut(s) 66, 105, 515, 983, 1189, 1289, 1471, 1479
SseBI AGGCCT 1 cut(s) 781
SsiI CCGC 8 cut(s) 263, 273, 306, 340, 666, 669, 825, 1183
SstI GAGCTC 2 cut(s) 584, 1334
StuI AGGCCT 1 cut(s) 781
StyD4I CCNGG 4 cut(s) 933, 1120, 1160, 1376
StyI CCWWGG 3 cut(s) 572, 685, 1062
TaaI ACNGT 1 cut(s) 1468
TaiI ACGT 2 cut(s) 900, 945
TaqI TCGA 5 cut(s) 103, 206, 371, 425, 903
TasI AATT 8 cut(s) 66, 105, 515, 983, 1189, 1289, 1471, 1479
TauI GCSGC 2 cut(s) 671, 1186
TfiI GAWTC 1 cut(s) 72
Tru1I TTAA 3 cut(s) 1002, 1029, 1272
Tru9I TTAA 3 cut(s) 1002, 1029, 1272
TscAI CASTG 5 cut(s) 714, 1239, 1365, 1390, 1398
TseFI GTSAC 1 cut(s) 58
TseI GCWGC 4 cut(s) 278, 281, 504, 1388
Tsp45I GTSAC 1 cut(s) 58
TspDTI ATGAA 6 cut(s) 185, 703, 780, 899, 1118, 1274
TspRI CASTG 5 cut(s) 714, 1239, 1365, 1390, 1398
Van91I CCANNNNNTGG 1 cut(s) 191
VpaK11BI GGWCC 1 cut(s) 612
XapI RAATTY 3 cut(s) 983, 1189, 1479
XhoI CTCGAG 1 cut(s) 902
XmiI GTMKAC 2 cut(s) 13, 371
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.