Rh6BG249800

Transport and Golgi organisation 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0002621
Physical Location & Seq
Forward (+)
46168653 .. 46170458
1806 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG249800.1

Sequence Viewer

Length: 702 bp
ATGTGTATAGCGGCGTTCGTGTGGCAGTCTCACCCACGCTACCCCTTCCTCCTCCTCCTCAACAGGGACGAATATTTCAACCGGGAAACGGCGGCTTTGCAATGGTGGGACGACACCCTCCGGATATTGGGCGGAAGAGATGCGGTGGAAGGTGGGACATGGCTGGCTTGTTCCAAGGATGGTAAGGTGGCTTTTCTCACTAATGTCAGAGAGCTCAACAGACTTGTGCAATGCAAGAGCAGAGGAGAACTCCCATCCCTTTTCTTGTCGGGCAAAAAGAGTCCGATGGAATTTGCGGAGGAAGTTGTTGAGGAGGCAGATAAGTACAATGGGTTTAACCTGATATTGGCTGATCTTTGTTCTAAGACCATGCTTTATGTAACCAACAGACCAAAGGAGGAAAAAAAGTTTATCACTGAGGTTTCACCGGGGATTCATGTATTGACAAATGATGCAATGCTTGATTCTCCTTGGCCTAAGTCTCAACGACTTAGCAATAGTTTCAAAGAGATGCTCAACAAGTATGGAGATGATGAAGTTTCGTTAAAGGAAATGGCTCTACGACTAATGACAGACGAGACCAGAGACGACAAAAGCCTGCTACCTTGCATTTATTCTCCAGAAGTAGAATACGAACTAAGTTCCATATATATTGAATATGCCCCTGCATTGGTAAAACCAATTACATATCTTCCTATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TANGO2

Protein Analysis

233

Amino Acids

26.75

Weight (kDa)

5.08

Isoelectric Point (pI)

36.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TANGO2 PF05742 1 - 222 2.9e-64 Transport and Golgi organisation 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 120
AciI CCGC 5 cut(s) 11, 92, 132, 143, 296
AcsI RAATTY 1 cut(s) 290
AfaI GTAC 1 cut(s) 326
AfiI CCNNNNNNNGG 5 cut(s) 64, 88, 127, 346, 670
AgsI TTSAA 3 cut(s) 79, 505, 656
AluBI AGCT 1 cut(s) 214
AluI AGCT 1 cut(s) 214
Alw21I GWGCWC 1 cut(s) 216
Alw26I GTCTC 4 cut(s) 33, 486, 572, 579
Aor13HI TCCGGA 1 cut(s) 120
AoxI GGCC 1 cut(s) 473
ApoI RAATTY 1 cut(s) 290
AsuC2I CCSGG 2 cut(s) 83, 429
AsuHPI GGTGA 2 cut(s) 23, 417
BanII GRGCYC 1 cut(s) 216
Bbv12I GWGCWC 1 cut(s) 216
BccI CCATC 3 cut(s) 173, 262, 280
BceAI ACGGC 1 cut(s) 105
BcnI CCSGG 2 cut(s) 83, 429
BcoDI GTCTC 4 cut(s) 33, 486, 572, 579
BisI GCNGC 2 cut(s) 12, 93
BlsI GCNGC 2 cut(s) 13, 94
Bme1390I CCNGG 2 cut(s) 83, 429
BmrFI CCNGG 2 cut(s) 83, 429
BmsI GCATC 3 cut(s) 130, 442, 501
BplI GAGNNNNNCTC 2 cut(s) 234, 266
BpmI CTGGAG 1 cut(s) 603
BpuMI CCSGG 2 cut(s) 83, 429
BsaI GGTCTC 1 cut(s) 572
BsaJI CCNNGG 3 cut(s) 174, 428, 470
BsaWI WCCGGW 1 cut(s) 120
Bsc4I CCNNNNNNNGG 5 cut(s) 64, 88, 127, 346, 670
Bse3DI GCAATG 3 cut(s) 107, 236, 462
BseAI TCCGGA 1 cut(s) 120
BseDI CCNNGG 3 cut(s) 174, 428, 470
BseGI GGATG 2 cut(s) 184, 254
BseLI CCNNNNNNNGG 5 cut(s) 64, 88, 127, 346, 670
BseMI GCAATG 3 cut(s) 107, 236, 462
BseMII CTCAG 1 cut(s) 408
BseRI GAGGAG 5 cut(s) 41, 44, 47, 258, 326
BshFI GGCC 1 cut(s) 475
BsiHKAI GWGCWC 1 cut(s) 216
BsiSI CCGG 3 cut(s) 82, 121, 428
BslFI GGGAC 3 cut(s) 80, 122, 169
BslI CCNNNNNNNGG 5 cut(s) 64, 88, 127, 346, 670
BsmAI GTCTC 4 cut(s) 33, 486, 572, 579
BsmBI CGTCTC 1 cut(s) 579
BsmFI GGGAC 3 cut(s) 80, 122, 169
BsnI GGCC 1 cut(s) 475
Bso31I GGTCTC 1 cut(s) 572
Bsp1286I GDGCHC 1 cut(s) 216
Bsp13I TCCGGA 1 cut(s) 120
Bsp143I GATC 1 cut(s) 352
BspACI CCGC 5 cut(s) 11, 92, 132, 143, 296
BspANI GGCC 1 cut(s) 475
BspCNI CTCAG 1 cut(s) 409
BspEI TCCGGA 1 cut(s) 120
BspTNI GGTCTC 1 cut(s) 572
BsrDI GCAATG 3 cut(s) 107, 236, 462
BssECI CCNNGG 3 cut(s) 174, 428, 470
BssMI GATC 1 cut(s) 352
BssT1I CCWWGG 2 cut(s) 174, 470
Bst6I CTCTTC 1 cut(s) 130
BstC8I GCNNGC 2 cut(s) 165, 599
BstDEI CTNAG 5 cut(s) 363, 417, 477, 491, 638
BstF5I GGATG 2 cut(s) 184, 254
BstKTI GATC 1 cut(s) 355
BstMAI GTCTC 4 cut(s) 33, 486, 572, 579
BstMBI GATC 1 cut(s) 352
BstSCI CCNGG 2 cut(s) 81, 427
BsuRI GGCC 1 cut(s) 475
BtsCI GGATG 2 cut(s) 184, 254
BtsIMutI CAGTG 1 cut(s) 414
Cac8I GCNNGC 2 cut(s) 165, 599
Csp6I GTAC 1 cut(s) 325
CviAII CATG 3 cut(s) 159, 370, 437
CviJI RGCY 9 cut(s) 95, 163, 167, 191, 214, 350, 475, 557, 597
CviKI_1 RGCY 9 cut(s) 95, 163, 167, 191, 214, 350, 475, 557, 597
CviQI GTAC 1 cut(s) 325
DdeI CTNAG 5 cut(s) 363, 417, 477, 491, 638
DpnI GATC 1 cut(s) 354
DpnII GATC 1 cut(s) 352
Eam1104I CTCTTC 1 cut(s) 130
EarI CTCTTC 1 cut(s) 130
EciI GGCGGA 1 cut(s) 147
Ecl136II GAGCTC 1 cut(s) 214
Eco130I CCWWGG 2 cut(s) 174, 470
Eco24I GRGCYC 1 cut(s) 216
Eco31I GGTCTC 1 cut(s) 572
Eco53kI GAGCTC 1 cut(s) 214
EcoICRI GAGCTC 1 cut(s) 214
EcoT14I CCWWGG 2 cut(s) 174, 470
EcoT38I GRGCYC 1 cut(s) 216
ErhI CCWWGG 2 cut(s) 174, 470
Esp3I CGTCTC 1 cut(s) 579
FaeI CATG 3 cut(s) 162, 373, 440
FaqI GGGAC 3 cut(s) 80, 122, 169
FatI CATG 3 cut(s) 158, 369, 436
Fnu4HI GCNGC 2 cut(s) 12, 93
FokI GGATG 2 cut(s) 191, 241
FriOI GRGCYC 1 cut(s) 216
Fsp4HI GCNGC 2 cut(s) 12, 93
GluI GCNGC 2 cut(s) 12, 93
GsuI CTGGAG 1 cut(s) 603
HaeIII GGCC 1 cut(s) 475
HapII CCGG 3 cut(s) 82, 121, 428
Hin1II CATG 3 cut(s) 162, 373, 440
HinfI GANTC 3 cut(s) 280, 433, 464
HpaII CCGG 3 cut(s) 82, 121, 428
HphI GGTGA 2 cut(s) 23, 417
Hpy188I TCNGA 2 cut(s) 209, 285
Hpy188III TCNNGA 2 cut(s) 121, 620
HpyAV CCTTC 2 cut(s) 55, 143
HpyCH4V TGCA 6 cut(s) 100, 229, 234, 455, 609, 668
HpyF3I CTNAG 5 cut(s) 363, 417, 477, 491, 638
Hsp92II CATG 3 cut(s) 162, 373, 440
Kpn2I TCCGGA 1 cut(s) 120
Kzo9I GATC 1 cut(s) 352
LweI GCATC 3 cut(s) 130, 442, 501
MaeIII GTNAC 1 cut(s) 379
MalI GATC 1 cut(s) 354
MboI GATC 1 cut(s) 352
MboII GAAGA 2 cut(s) 147, 683
MhlI GDGCHC 1 cut(s) 216
MluCI AATT 2 cut(s) 290, 681
MlyI GAGTC 1 cut(s) 289
MroI TCCGGA 1 cut(s) 120
MseI TTAA 2 cut(s) 336, 545
MspI CCGG 3 cut(s) 82, 121, 428
MspR9I CCNGG 2 cut(s) 83, 429
NciI CCSGG 2 cut(s) 83, 429
NdeII GATC 1 cut(s) 352
NlaIII CATG 3 cut(s) 162, 373, 440
PfeI GAWTC 2 cut(s) 433, 464
PkrI GCNGC 2 cut(s) 13, 94
PleI GAGTC 1 cut(s) 288
PpsI GAGTC 1 cut(s) 288
Psp124BI GAGCTC 1 cut(s) 216
RsaI GTAC 1 cut(s) 326
RsaNI GTAC 1 cut(s) 325
SacI GAGCTC 1 cut(s) 216
SaqAI TTAA 2 cut(s) 336, 545
SatI GCNGC 2 cut(s) 12, 93
Sau3AI GATC 1 cut(s) 352
SchI GAGTC 1 cut(s) 289
ScrFI CCNGG 2 cut(s) 83, 429
SduI GDGCHC 1 cut(s) 216
SetI ASST 6 cut(s) 154, 189, 216, 342, 423, 607
SfaNI GCATC 3 cut(s) 130, 442, 501
Sse9I AATT 2 cut(s) 290, 681
SsiI CCGC 5 cut(s) 11, 92, 132, 143, 296
SspI AATATT 1 cut(s) 74
SstI GAGCTC 1 cut(s) 216
StyD4I CCNGG 2 cut(s) 81, 427
StyI CCWWGG 2 cut(s) 174, 470
TasI AATT 2 cut(s) 290, 681
TatI WGTACW 1 cut(s) 324
TauI GCSGC 2 cut(s) 14, 95
TfiI GAWTC 2 cut(s) 433, 464
Tru1I TTAA 2 cut(s) 336, 545
Tru9I TTAA 2 cut(s) 336, 545
TscAI CASTG 1 cut(s) 421
TspDTI ATGAA 2 cut(s) 425, 549
TspRI CASTG 1 cut(s) 421
XapI RAATTY 1 cut(s) 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.