Rw0G020460

Transport and Golgi organisation 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00925
OG0002621
Physical Location & Seq
Reverse (-)
81339 .. 84912
3574 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G020460.1

Sequence Viewer

Length: 684 bp
ATGAGACACCTAATCCATAAATTTTATGTGGTCAGAGAGCTAATGGGCGAGCAGCTTTTGAACGGTGATAAGGCTCTCTGTGTCGGTGAAGGATCGGCCTCGGCCGTGATGGCGTTGCAAGATTTGGGGTTTCCCAATGCTCGTGGTGGCAAAAAGAGTCCGATGGAATTTGCGGAGGAAGTTGTTGAGGAGGCAGATAAATACAATGGGTTTAACTTGATATTGGCTGATCTTTGTTCTAAGACCATGCTTTATGTAACCAACAGACCAAAGGAGGAAAAAAAGTTTATCACTGAGGTTTCACCGGGGATTCATGTATTGACAAATGATGCAATGCTTGATTCTCCTTGGCCTAAGTCTCAACGACTTAGCAATAGTTTCAAAGAGATGCTCAACAAGTATGGAGATGATGAAGCTTCGTTAAAGGAAATGGCTCTACGACTAATGACAGACGAGACCAGAGACGACAAAAGCCTGCTACCTTGCATTTATTCTCCAGAAGTAGAATACGAACTAAGTTCCATATATATTGAATATGCCCCTGCATTGGGGTATTGTGGTACTAGAAGCACTGAAGCAGTGTCTGTCAATACAATTGGGGAAGTCACCTTTTATGAGAGATTTATAGCTGGGGATTGGCATGAAAGGACCGAGACCTTCCAGATTGAAGAGGAGAGTAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TANGO2

Protein Analysis

227

Amino Acids

25.72

Weight (kDa)

4.8

Isoelectric Point (pI)

45.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TANGO2 PF05742 51 - 208 4.5e-30 Transport and Golgi organisation 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 173
AclWI GGATC 1 cut(s) 100
AcoI YGGCCR 1 cut(s) 102
AcsI RAATTY 2 cut(s) 20, 167
AcuI CTGAAG 1 cut(s) 594
AfaI GTAC 1 cut(s) 562
AfiI CCNNNNNNNGG 2 cut(s) 547, 548
AgsI TTSAA 4 cut(s) 61, 382, 533, 668
AluBI AGCT 4 cut(s) 40, 55, 416, 629
AluI AGCT 4 cut(s) 40, 55, 416, 629
Alw26I GTCTC 4 cut(s) 363, 449, 456, 647
AlwI GGATC 1 cut(s) 100
AlwNI CAGNNNCTG 1 cut(s) 584
AoxI GGCC 3 cut(s) 96, 102, 350
ApeKI GCWGC 1 cut(s) 52
ApoI RAATTY 2 cut(s) 20, 167
AspS9I GGNCC 1 cut(s) 648
AsuC2I CCSGG 1 cut(s) 306
AsuHPI GGTGA 4 cut(s) 77, 98, 294, 598
AvaII GGWCC 1 cut(s) 648
BauI CACGAG 1 cut(s) 141
BbvI GCAGC 1 cut(s) 64
BccI CCATC 2 cut(s) 103, 157
BceAI ACGGC 1 cut(s) 89
BcnI CCSGG 1 cut(s) 306
BcoDI GTCTC 4 cut(s) 363, 449, 456, 647
BfaI CTAG 1 cut(s) 564
BglI GCCNNNNNGGC 1 cut(s) 110
BisI GCNGC 1 cut(s) 53
BlsI GCNGC 1 cut(s) 54
Bme1390I CCNGG 1 cut(s) 306
Bme18I GGWCC 1 cut(s) 648
BmgT120I GGNCC 1 cut(s) 648
BmrFI CCNGG 1 cut(s) 306
BmsI GCATC 2 cut(s) 319, 378
BpmI CTGGAG 1 cut(s) 480
BpuMI CCSGG 1 cut(s) 306
BsaI GGTCTC 2 cut(s) 449, 647
BsaJI CCNNGG 3 cut(s) 99, 305, 347
Bsc4I CCNNNNNNNGG 2 cut(s) 547, 548
Bse3DI GCAATG 1 cut(s) 339
BseDI CCNNGG 3 cut(s) 99, 305, 347
BseLI CCNNNNNNNGG 2 cut(s) 547, 548
BseMI GCAATG 1 cut(s) 339
BseMII CTCAG 1 cut(s) 285
BseRI GAGGAG 1 cut(s) 203
BseX3I CGGCCG 1 cut(s) 102
BseXI GCAGC 1 cut(s) 64
BseYI CCCAGC 1 cut(s) 629
Bsh1285I CGRYCG 1 cut(s) 105
BshFI GGCC 3 cut(s) 98, 104, 352
BsiEI CGRYCG 1 cut(s) 105
BsiSI CCGG 1 cut(s) 305
BslI CCNNNNNNNGG 2 cut(s) 547, 548
BsmAI GTCTC 4 cut(s) 363, 449, 456, 647
BsmBI CGTCTC 1 cut(s) 456
BsnI GGCC 3 cut(s) 98, 104, 352
Bso31I GGTCTC 2 cut(s) 449, 647
Bsp143I GATC 2 cut(s) 92, 229
BspACI CCGC 1 cut(s) 173
BspANI GGCC 3 cut(s) 98, 104, 352
BspCNI CTCAG 1 cut(s) 286
BspPI GGATC 1 cut(s) 100
BspTNI GGTCTC 2 cut(s) 449, 647
BsrDI GCAATG 1 cut(s) 339
BssECI CCNNGG 3 cut(s) 99, 305, 347
BssMI GATC 2 cut(s) 92, 229
BssSI CACGAG 1 cut(s) 141
BssT1I CCWWGG 1 cut(s) 347
Bst2BI CACGAG 1 cut(s) 141
Bst4CI ACNGT 1 cut(s) 65
Bst6I CTCTTC 1 cut(s) 663
BstC8I GCNNGC 2 cut(s) 50, 476
BstDEI CTNAG 5 cut(s) 240, 294, 354, 368, 515
BstKTI GATC 2 cut(s) 95, 232
BstMAI GTCTC 4 cut(s) 363, 449, 456, 647
BstMBI GATC 2 cut(s) 92, 229
BstMCI CGRYCG 1 cut(s) 105
BstMWI GCNNNNNNNGC 1 cut(s) 110
BstSCI CCNGG 1 cut(s) 304
BstV1I GCAGC 1 cut(s) 64
BstZI CGGCCG 1 cut(s) 102
BsuRI GGCC 3 cut(s) 98, 104, 352
BtsI GCAGTG 1 cut(s) 585
BtsIMutI CAGTG 3 cut(s) 291, 570, 585
Cac8I GCNNGC 2 cut(s) 50, 476
CaiI CAGNNNCTG 1 cut(s) 584
Cfr13I GGNCC 1 cut(s) 648
Csp6I GTAC 1 cut(s) 561
CspCI CAANNNNNGTGG 2 cut(s) 124, 159
CviAII CATG 3 cut(s) 247, 314, 641
CviQI GTAC 1 cut(s) 561
DdeI CTNAG 5 cut(s) 240, 294, 354, 368, 515
DpnI GATC 2 cut(s) 94, 231
DpnII GATC 2 cut(s) 92, 229
EaeI YGGCCR 1 cut(s) 102
EagI CGGCCG 1 cut(s) 102
Eam1104I CTCTTC 1 cut(s) 663
EarI CTCTTC 1 cut(s) 663
EclXI CGGCCG 1 cut(s) 102
Eco130I CCWWGG 1 cut(s) 347
Eco31I GGTCTC 2 cut(s) 449, 647
Eco47I GGWCC 1 cut(s) 648
Eco52I CGGCCG 1 cut(s) 102
Eco57I CTGAAG 1 cut(s) 594
EcoT14I CCWWGG 1 cut(s) 347
ErhI CCWWGG 1 cut(s) 347
Esp3I CGTCTC 1 cut(s) 456
FaeI CATG 3 cut(s) 250, 317, 644
FatI CATG 3 cut(s) 246, 313, 640
Fnu4HI GCNGC 1 cut(s) 53
Fsp4HI GCNGC 1 cut(s) 53
FspBI CTAG 1 cut(s) 564
GluI GCNGC 1 cut(s) 53
GsaI CCCAGC 1 cut(s) 633
GsuI CTGGAG 1 cut(s) 480
HaeIII GGCC 3 cut(s) 98, 104, 352
HapII CCGG 1 cut(s) 305
Hin1II CATG 3 cut(s) 250, 317, 644
HindIII AAGCTT 1 cut(s) 414
HinfI GANTC 3 cut(s) 157, 310, 341
HpaII CCGG 1 cut(s) 305
HphI GGTGA 4 cut(s) 77, 98, 294, 598
Hpy188I TCNGA 2 cut(s) 35, 162
Hpy188III TCNNGA 2 cut(s) 497, 661
HpyAV CCTTC 2 cut(s) 83, 667
HpyCH4III ACNGT 1 cut(s) 65
HpyCH4V TGCA 4 cut(s) 118, 332, 486, 545
HpyF10VI GCNNNNNNNGC 1 cut(s) 110
HpyF3I CTNAG 5 cut(s) 240, 294, 354, 368, 515
Hsp92II CATG 3 cut(s) 250, 317, 644
Kzo9I GATC 2 cut(s) 92, 229
LpnPI CCDG 7 cut(s) 318, 472, 488, 510, 555, 615, 674
Lsp1109I GCAGC 1 cut(s) 64
LweI GCATC 2 cut(s) 319, 378
MaeI CTAG 1 cut(s) 564
MaeIII GTNAC 2 cut(s) 256, 604
MalI GATC 2 cut(s) 94, 231
MboI GATC 2 cut(s) 92, 229
MboII GAAGA 1 cut(s) 680
MfeI CAATTG 1 cut(s) 594
MluCI AATT 3 cut(s) 20, 167, 594
MlyI GAGTC 1 cut(s) 166
MnlI CCTC 7 cut(s) 109, 169, 181, 184, 268, 289, 664
MseI TTAA 2 cut(s) 213, 422
MspI CCGG 1 cut(s) 305
MspR9I CCNGG 1 cut(s) 306
MunI CAATTG 1 cut(s) 594
MwoI GCNNNNNNNGC 1 cut(s) 110
NciI CCSGG 1 cut(s) 306
NdeII GATC 2 cut(s) 92, 229
NlaIII CATG 3 cut(s) 250, 317, 644
NmeAIII GCCGAG 1 cut(s) 80
NmuCI GTSAC 1 cut(s) 604
PfeI GAWTC 2 cut(s) 310, 341
PkrI GCNGC 1 cut(s) 54
PleI GAGTC 1 cut(s) 165
PpsI GAGTC 1 cut(s) 165
PspFI CCCAGC 1 cut(s) 629
PspPI GGNCC 1 cut(s) 648
PstNI CAGNNNCTG 1 cut(s) 584
RsaI GTAC 1 cut(s) 562
RsaNI GTAC 1 cut(s) 561
SaqAI TTAA 2 cut(s) 213, 422
SatI GCNGC 1 cut(s) 53
Sau3AI GATC 2 cut(s) 92, 229
Sau96I GGNCC 1 cut(s) 648
SchI GAGTC 1 cut(s) 166
ScrFI CCNGG 1 cut(s) 306
SetI ASST 9 cut(s) 12, 42, 57, 300, 418, 484, 611, 631, 659
SfaNI GCATC 2 cut(s) 319, 378
SinI GGWCC 1 cut(s) 648
Sse9I AATT 3 cut(s) 20, 167, 594
SsiI CCGC 1 cut(s) 173
SspMI CTAG 1 cut(s) 564
StyD4I CCNGG 1 cut(s) 304
StyI CCWWGG 1 cut(s) 347
TaaI ACNGT 1 cut(s) 65
TaqII GACCGA 1 cut(s) 665
TasI AATT 3 cut(s) 20, 167, 594
TfiI GAWTC 2 cut(s) 310, 341
Tru1I TTAA 2 cut(s) 213, 422
Tru9I TTAA 2 cut(s) 213, 422
TscAI CASTG 3 cut(s) 298, 577, 585
TseFI GTSAC 1 cut(s) 604
TseI GCWGC 1 cut(s) 52
Tsp45I GTSAC 1 cut(s) 604
TspDTI ATGAA 3 cut(s) 302, 426, 657
TspRI CASTG 3 cut(s) 298, 577, 585
VpaK11BI GGWCC 1 cut(s) 648
XapI RAATTY 2 cut(s) 20, 167
XspI CTAG 1 cut(s) 564
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.