Rorug06G0134900

Transport and Golgi organisation 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0002621
Physical Location & Seq
Forward (+)
19106771 .. 19107701
931 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0134900.1

Sequence Viewer

Length: 729 bp
ATGGCTGAAATCCGAGACGAGTTCGGCAACCCCATCCCGCTCACCGACCAGTATGGCAACCCAGTTCAGCTGACAGACGAGCAAGGCCGCCCCATGCACCTCACTGGTATCGCCACCACCGAGGGCGGCCAAAGCCAAGCCATCCGTACTGGAGAGCAGCAGACCGGTATCGGAACCAGAGGCACCGGTCTCCACGTTCCGGGCACGGGCACACACGTTCCGGGCACCGGTGCCCACATCCCCGGGACTGGCATACACATCCCCGGCACAGGTTCTCATGTTCCGGGGACAGGTGCACATGTTCCGGGCACCGGTGAGCACATGCCAGGAACCGGAGCCGGTAGCCACCCGTCAGGTACGGGGACGACCGGTGGTGTTGCTGGAGTGAAGGCTGACGAAGTTATCACCGAGCATGCCGTGCATGGTACTGGAAAACCCAAAACTGTAGGTGAACATCTACAACAGGAGCGCCACACCGGTGAGGCCGGTGAACACCGTCGCAGCTCGAGCTCTAGTTCTTCGGAGGAGGATGATGGGCAAGGAGGGAGGATCAGGAAGAAGAAGGGACTGAAGGAGAAGATAAAGGAAACCTTTAGCGGTAAACATAAGGATGAGCATCCGGAGGCGGGGCCGGCCTTCAAGACCCCCACGACGACTCCTCAGGAGCATGAGAAGAAAGGCATGATGGAGAAGATCAAGCAGAAGTTACCTGGTCACCATCCCCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TANGO2

Protein Analysis

242

Amino Acids

25.22

Weight (kDa)

6.86

Isoelectric Point (pI)

30.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dehydrin PF00257 22 - 240 5.2e-31 Dehydrin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 4 cut(s) 182, 224, 230, 308
AccBSI CCGCTC 1 cut(s) 40
AccIII TCCGGA 1 cut(s) 619
AciI CCGC 5 cut(s) 38, 88, 126, 597, 626
AclWI GGATC 1 cut(s) 557
AcoI YGGCCR 1 cut(s) 127
AcuI CTGAAG 1 cut(s) 590
AfaI GTAC 3 cut(s) 148, 358, 427
AfiI CCNNNNNNNGG 9 cut(s) 199, 206, 227, 248, 269, 290, 311, 332, 626
AflIII ACRYGT 2 cut(s) 214, 298
AgeI ACCGGT 6 cut(s) 164, 185, 227, 311, 368, 476
AgsI TTSAA 1 cut(s) 640
AjnI CCWGG 2 cut(s) 325, 709
AleI CACNNNNGTG 1 cut(s) 477
AluBI AGCT 3 cut(s) 70, 504, 510
AluI AGCT 3 cut(s) 70, 504, 510
Alw21I GWGCWC 3 cut(s) 298, 321, 512
Alw26I GTCTC 2 cut(s) 9, 194
Alw44I GTGCAC 1 cut(s) 294
AlwI GGATC 1 cut(s) 557
Ama87I CYCGRG 2 cut(s) 242, 505
Aor13HI TCCGGA 1 cut(s) 619
AoxI GGCC 5 cut(s) 85, 127, 483, 629, 633
ApaLI GTGCAC 1 cut(s) 294
ApeKI GCWGC 2 cut(s) 157, 501
AsiGI ACCGGT 6 cut(s) 164, 185, 227, 311, 368, 476
AspLEI GCGC 1 cut(s) 471
AspS9I GGNCC 1 cut(s) 629
AsuC2I CCSGG 7 cut(s) 201, 222, 243, 244, 264, 285, 306
AsuHPI GGTGA 7 cut(s) 34, 326, 397, 461, 491, 500, 707
AvaI CYCGRG 2 cut(s) 242, 505
AxyI CCTNAGG 1 cut(s) 660
BaeGI GKGCMC 6 cut(s) 206, 212, 227, 235, 298, 311
BanI GGYRCC 4 cut(s) 182, 224, 230, 308
BanII GRGCYC 1 cut(s) 512
Bbv12I GWGCWC 3 cut(s) 298, 321, 512
BbvI GCAGC 2 cut(s) 169, 513
BccI CCATC 5 cut(s) 41, 149, 527, 679, 726
BceAI ACGGC 1 cut(s) 401
BciT130I CCWGG 2 cut(s) 327, 711
BcnI CCSGG 7 cut(s) 201, 222, 243, 244, 264, 285, 306
BcoDI GTCTC 2 cut(s) 9, 194
BfaI CTAG 1 cut(s) 513
BfmI CTRYAG 1 cut(s) 444
BfoI RGCGCY 1 cut(s) 472
BisI GCNGC 4 cut(s) 88, 127, 158, 502
BlsI GCNGC 4 cut(s) 89, 128, 159, 503
Bme1390I CCNGG 9 cut(s) 201, 222, 243, 244, 264, 285, 306, 327, 711
BmeT110I CYCGRG 2 cut(s) 242, 505
BmgT120I GGNCC 1 cut(s) 629
BmiI GGNNCC 8 cut(s) 175, 184, 226, 232, 310, 331, 337, 630
BmrFI CCNGG 9 cut(s) 201, 222, 243, 244, 264, 285, 306, 327, 711
BmrI ACTGGG 1 cut(s) 56
BmsI GCATC 1 cut(s) 625
BmuI ACTGGG 1 cut(s) 56
BpmI CTGGAG 2 cut(s) 171, 402
BpuMI CCSGG 7 cut(s) 201, 222, 243, 244, 264, 285, 306
BsaBI GATNNNNATC 1 cut(s) 615
BsaI GGTCTC 1 cut(s) 194
BsaJI CCNNGG 5 cut(s) 120, 241, 242, 262, 284
BsaWI WCCGGW 8 cut(s) 164, 185, 227, 311, 332, 368, 476, 619
BsaXI ACNNNNNCTCC 2 cut(s) 640, 670
Bsc4I CCNNNNNNNGG 9 cut(s) 199, 206, 227, 248, 269, 290, 311, 332, 626
Bse118I RCCGGY 9 cut(s) 164, 185, 227, 311, 338, 368, 476, 485, 631
Bse1I ACTGG 6 cut(s) 49, 62, 109, 154, 253, 433
Bse21I CCTNAGG 1 cut(s) 660
Bse8I GATNNNNATC 1 cut(s) 615
BseAI TCCGGA 1 cut(s) 619
BseBI CCWGG 2 cut(s) 327, 711
BseDI CCNNGG 5 cut(s) 120, 241, 242, 262, 284
BseGI GGATG 8 cut(s) 33, 141, 237, 258, 535, 616, 616, 718
BseJI GATNNNNATC 1 cut(s) 615
BseLI CCNNNNNNNGG 9 cut(s) 199, 206, 227, 248, 269, 290, 311, 332, 626
BseMII CTCAG 1 cut(s) 674
BseNI ACTGG 6 cut(s) 49, 62, 109, 154, 253, 433
BseRI GAGGAG 2 cut(s) 539, 648
BseSI GKGCMC 6 cut(s) 206, 212, 227, 235, 298, 311
BseXI GCAGC 2 cut(s) 169, 513
Bsh1285I CGRYCG 1 cut(s) 369
BshFI GGCC 5 cut(s) 87, 129, 485, 631, 635
BshNI GGYRCC 4 cut(s) 182, 224, 230, 308
BshTI ACCGGT 6 cut(s) 164, 185, 227, 311, 368, 476
BsiEI CGRYCG 1 cut(s) 369
BsiHKAI GWGCWC 3 cut(s) 298, 321, 512
BsiHKCI CYCGRG 2 cut(s) 242, 505
BslFI GGGAC 4 cut(s) 259, 301, 376, 579
BslI CCNNNNNNNGG 9 cut(s) 199, 206, 227, 248, 269, 290, 311, 332, 626
BsmAI GTCTC 2 cut(s) 9, 194
BsmBI CGTCTC 1 cut(s) 9
BsmFI GGGAC 4 cut(s) 259, 301, 376, 579
BsnI GGCC 5 cut(s) 87, 129, 485, 631, 635
Bso31I GGTCTC 1 cut(s) 194
BsoBI CYCGRG 2 cut(s) 242, 505
Bsp1286I GDGCHC 8 cut(s) 206, 212, 227, 235, 298, 311, 321, 512
Bsp13I TCCGGA 1 cut(s) 619
Bsp143I GATC 2 cut(s) 549, 693
BspACI CCGC 5 cut(s) 38, 88, 126, 597, 626
BspANI GGCC 5 cut(s) 87, 129, 485, 631, 635
BspCNI CTCAG 1 cut(s) 673
BspEI TCCGGA 1 cut(s) 619
BspLI GGNNCC 8 cut(s) 175, 184, 226, 232, 310, 331, 337, 630
BspPI GGATC 1 cut(s) 557
BspT107I GGYRCC 4 cut(s) 182, 224, 230, 308
BspTNI GGTCTC 1 cut(s) 194
BsrBI CCGCTC 1 cut(s) 40
BsrFI RCCGGY 9 cut(s) 164, 185, 227, 311, 338, 368, 476, 485, 631
BsrI ACTGG 6 cut(s) 49, 62, 109, 154, 253, 433
BssAI RCCGGY 9 cut(s) 164, 185, 227, 311, 338, 368, 476, 485, 631
BssECI CCNNGG 5 cut(s) 120, 241, 242, 262, 284
BssMI GATC 2 cut(s) 549, 693
Bst2UI CCWGG 2 cut(s) 327, 711
Bst4CI ACNGT 2 cut(s) 445, 497
BstAPI GCANNNNNTGC 1 cut(s) 418
BstC8I GCNNGC 2 cut(s) 414, 633
BstDEI CTNAG 1 cut(s) 660
BstEII GGTNACC 1 cut(s) 713
BstF5I GGATG 8 cut(s) 33, 141, 237, 258, 535, 616, 616, 718
BstH2I RGCGCY 1 cut(s) 472
BstHHI GCGC 1 cut(s) 471
BstKTI GATC 2 cut(s) 552, 696
BstMAI GTCTC 2 cut(s) 9, 194
BstMBI GATC 2 cut(s) 549, 693
BstMCI CGRYCG 1 cut(s) 369
BstMWI GCNNNNNNNGC 4 cut(s) 132, 418, 507, 632
BstNI CCWGG 2 cut(s) 327, 711
BstNSI RCATGY 3 cut(s) 302, 325, 416
BstPI GGTNACC 1 cut(s) 713
BstSCI CCNGG 9 cut(s) 199, 220, 241, 242, 262, 283, 304, 325, 709
BstSFI CTRYAG 1 cut(s) 444
BstSLI GKGCMC 6 cut(s) 206, 212, 227, 235, 298, 311
BstV1I GCAGC 2 cut(s) 169, 513
Bsu36I CCTNAGG 1 cut(s) 660
BsuRI GGCC 5 cut(s) 87, 129, 485, 631, 635
BtsCI GGATG 8 cut(s) 33, 141, 237, 258, 535, 616, 616, 718
BtsIMutI CAGTG 2 cut(s) 102, 724
Cac8I GCNNGC 2 cut(s) 414, 633
CfoI GCGC 1 cut(s) 471
Cfr10I RCCGGY 9 cut(s) 164, 185, 227, 311, 338, 368, 476, 485, 631
Cfr13I GGNCC 1 cut(s) 629
Cfr9I CCCGGG 1 cut(s) 242
CsiI ACCWGGT 1 cut(s) 709
Csp6I GTAC 3 cut(s) 147, 357, 426
CspAI ACCGGT 6 cut(s) 164, 185, 227, 311, 368, 476
CviAII CATG 8 cut(s) 94, 278, 299, 322, 413, 422, 668, 682
CviQI GTAC 3 cut(s) 147, 357, 426
DdeI CTNAG 1 cut(s) 660
DpnI GATC 2 cut(s) 551, 695
DpnII GATC 2 cut(s) 549, 693
EaeI YGGCCR 1 cut(s) 127
Ecl136II GAGCTC 1 cut(s) 510
Eco24I GRGCYC 1 cut(s) 512
Eco31I GGTCTC 1 cut(s) 194
Eco53kI GAGCTC 1 cut(s) 510
Eco57I CTGAAG 1 cut(s) 590
Eco81I CCTNAGG 1 cut(s) 660
Eco88I CYCGRG 2 cut(s) 242, 505
Eco91I GGTNACC 1 cut(s) 713
EcoICRI GAGCTC 1 cut(s) 510
EcoO65I GGTNACC 1 cut(s) 713
EcoRII CCWGG 2 cut(s) 325, 709
EcoT38I GRGCYC 1 cut(s) 512
Esp3I CGTCTC 1 cut(s) 9
FaeI CATG 8 cut(s) 97, 281, 302, 325, 416, 425, 671, 685
FalI AAGNNNNNCTT 2 cut(s) 575, 607
FaqI GGGAC 4 cut(s) 259, 301, 376, 579
FatI CATG 8 cut(s) 93, 277, 298, 321, 412, 421, 667, 681
FauI CCCGC 2 cut(s) 45, 619
Fnu4HI GCNGC 4 cut(s) 88, 127, 158, 502
FokI GGATG 8 cut(s) 20, 128, 224, 245, 542, 603, 623, 705
FriOI GRGCYC 1 cut(s) 512
FseI GGCCGGCC 1 cut(s) 635
Fsp4HI GCNGC 4 cut(s) 88, 127, 158, 502
FspBI CTAG 1 cut(s) 513
GlaI GCGC 1 cut(s) 470
GluI GCNGC 4 cut(s) 88, 127, 158, 502
GsuI CTGGAG 2 cut(s) 171, 402
HaeII RGCGCY 1 cut(s) 472
HaeIII GGCC 5 cut(s) 87, 129, 485, 631, 635
HhaI GCGC 1 cut(s) 471
Hin1II CATG 8 cut(s) 97, 281, 302, 325, 416, 425, 671, 685
Hin6I GCGC 1 cut(s) 469
HinP1I GCGC 1 cut(s) 469
HinfI GANTC 1 cut(s) 655
HphI GGTGA 7 cut(s) 34, 326, 397, 461, 491, 500, 707
Hpy166II GTNNAC 4 cut(s) 296, 452, 491, 602
Hpy188I TCNGA 3 cut(s) 14, 173, 523
Hpy188III TCNNGA 4 cut(s) 553, 620, 640, 662
Hpy8I GTNNAC 4 cut(s) 296, 452, 491, 602
Hpy99I CGWCG 2 cut(s) 501, 655
HpyAV CCTTC 4 cut(s) 382, 556, 565, 646
HpyCH4III ACNGT 2 cut(s) 445, 497
HpyCH4IV ACGT 2 cut(s) 195, 216
HpyCH4V TGCA 3 cut(s) 97, 296, 421
HpyF10VI GCNNNNNNNGC 4 cut(s) 132, 418, 507, 632
HpyF3I CTNAG 1 cut(s) 660
HpySE526I ACGT 2 cut(s) 195, 216
Hsp92II CATG 8 cut(s) 97, 281, 302, 325, 416, 425, 671, 685
HspAI GCGC 1 cut(s) 469
Kpn2I TCCGGA 1 cut(s) 619
KroI GCCGGC 1 cut(s) 631
KroNI GCCGGC 1 cut(s) 633
Kzo9I GATC 2 cut(s) 549, 693
LmnI GCTCC 3 cut(s) 335, 466, 664
Lsp1109I GCAGC 2 cut(s) 169, 513
LweI GCATC 1 cut(s) 625
MabI ACCWGGT 1 cut(s) 709
MaeI CTAG 1 cut(s) 513
MaeII ACGT 2 cut(s) 195, 216
MaeIII GTNAC 2 cut(s) 705, 713
MalI GATC 2 cut(s) 551, 695
MbiI CCGCTC 1 cut(s) 40
MboI GATC 2 cut(s) 549, 693
MboII GAAGA 6 cut(s) 510, 568, 571, 589, 685, 703
MhlI GDGCHC 8 cut(s) 206, 212, 227, 235, 298, 311, 321, 512
MlyI GAGTC 1 cut(s) 649
MroI TCCGGA 1 cut(s) 619
MroNI GCCGGC 1 cut(s) 631
MslI CAYNNNNRTG 2 cut(s) 477, 609
MspA1I CMGCKG 1 cut(s) 70
MspR9I CCNGG 9 cut(s) 201, 222, 243, 244, 264, 285, 306, 327, 711
MvaI CCWGG 2 cut(s) 327, 711
MwoI GCNNNNNNNGC 4 cut(s) 132, 418, 507, 632
NaeI GCCGGC 1 cut(s) 633
NciI CCSGG 7 cut(s) 201, 222, 243, 244, 264, 285, 306
NdeII GATC 2 cut(s) 549, 693
NgoMIV GCCGGC 1 cut(s) 631
NlaIII CATG 8 cut(s) 97, 281, 302, 325, 416, 425, 671, 685
NlaIV GGNNCC 8 cut(s) 175, 184, 226, 232, 310, 331, 337, 630
NmuCI GTSAC 1 cut(s) 713
NspI RCATGY 3 cut(s) 302, 325, 416
OliI CACNNNNGTG 1 cut(s) 477
PaeI GCATGC 1 cut(s) 416
PaeR7I CTCGAG 1 cut(s) 505
PciI ACATGT 1 cut(s) 298
PcsI WCGNNNNNNNCGW 1 cut(s) 117
PdiI GCCGGC 1 cut(s) 633
PinAI ACCGGT 6 cut(s) 164, 185, 227, 311, 368, 476
PkrI GCNGC 4 cut(s) 89, 128, 159, 503
PleI GAGTC 1 cut(s) 649
PpsI GAGTC 1 cut(s) 649
PscI ACATGT 1 cut(s) 298
Psp124BI GAGCTC 1 cut(s) 512
Psp6I CCWGG 2 cut(s) 325, 709
PspEI GGTNACC 1 cut(s) 713
PspGI CCWGG 2 cut(s) 325, 709
PspN4I GGNNCC 8 cut(s) 175, 184, 226, 232, 310, 331, 337, 630
PspPI GGNCC 1 cut(s) 629
PspXI VCTCGAGB 1 cut(s) 505
PvuII CAGCTG 1 cut(s) 70
RigI GGCCGGCC 1 cut(s) 635
RsaI GTAC 3 cut(s) 148, 358, 427
RsaNI GTAC 3 cut(s) 147, 357, 426
RseI CAYNNNNRTG 2 cut(s) 477, 609
SacI GAGCTC 1 cut(s) 512
SatI GCNGC 4 cut(s) 88, 127, 158, 502
Sau3AI GATC 2 cut(s) 549, 693
Sau96I GGNCC 1 cut(s) 629
SchI GAGTC 1 cut(s) 649
ScrFI CCNGG 9 cut(s) 201, 222, 243, 244, 264, 285, 306, 327, 711
SduI GDGCHC 8 cut(s) 206, 212, 227, 235, 298, 311, 321, 512
SexAI ACCWGGT 1 cut(s) 709
SfaNI GCATC 1 cut(s) 625
SfcI CTRYAG 1 cut(s) 444
Sfr274I CTCGAG 1 cut(s) 505
SgrAI CRCCGGYG 3 cut(s) 227, 311, 476
SlaI CTCGAG 1 cut(s) 505
SmaI CCCGGG 1 cut(s) 244
SmiMI CAYNNNNRTG 2 cut(s) 477, 609
SmlI CTYRAG 1 cut(s) 505
SmoI CTYRAG 1 cut(s) 505
SphI GCATGC 1 cut(s) 416
SsiI CCGC 5 cut(s) 38, 88, 126, 597, 626
SspMI CTAG 1 cut(s) 513
SstI GAGCTC 1 cut(s) 512
StyD4I CCNGG 9 cut(s) 199, 220, 241, 242, 262, 283, 304, 325, 709
TaaI ACNGT 2 cut(s) 445, 497
TaiI ACGT 2 cut(s) 198, 219
TaqI TCGA 1 cut(s) 506
TauI GCSGC 2 cut(s) 90, 129
TscAI CASTG 1 cut(s) 109
TseFI GTSAC 1 cut(s) 713
TseI GCWGC 2 cut(s) 157, 501
Tsp45I GTSAC 1 cut(s) 713
TspGWI ACGGA 1 cut(s) 134
TspMI CCCGGG 1 cut(s) 242
TspRI CASTG 1 cut(s) 109
VneI GTGCAC 1 cut(s) 294
XceI RCATGY 3 cut(s) 302, 325, 416
XhoI CTCGAG 1 cut(s) 505
XmaI CCCGGG 1 cut(s) 242
XspI CTAG 1 cut(s) 513
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.