MD05G1135200.v1.1

Transport and Golgi organisation 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0002621
Physical Location & Seq
Forward (+)
26343812 .. 26346667
2856 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1135200.v1.1.491

Sequence Viewer

Length: 810 bp
ATGTGTATAGCTGTGTTCGTGTGGCAAAATCACCCAGTTTACCCCTTCCTTCTGCTGCTCAACAGGGACGAGTTTCACAGCAGGCCAACAGAGCCTCTGGCATGGTGGGAAGGAGGGGAGATCTTAGGGGGAAGAGATGGATTGGCAGGTGGGACATGGCTGGCTTGCACCAGAGATGGTAAGGTGGCTTTTATCACAAATGTTAGAGAAGTTCAGAAGCTTGCTCAAGCTAAGAGCAGAGGGGACCTTCCGGTTCGATTCTTGGAGAGCAAGAAGAGTCCCATGGAGTTCGCCGATGAAGTTGTGGAGGAGGCGGATCAATACAACGGGTTTAACCTGGTATTGGCCGATCTTTGTTCTAGGACCATGGTTTATGTAACCAACAGACCGAAGGAGGACAGGAATTTTGTCACTGAGGTCTCTCCCGGGATCCATGTCTTGTCAAATGCACAACTAGATTCTCCTTGGCCTAAGGCTCAACTACTAGGCGATAGTTTCAGAGAGACACTTATGGAATCCAGCGGCGACGATCTTCCGATAAAATTAATGGTTGAGAAACTAATGACGAACACGGTTAAAGTCGAGGACGAAAGCCTCCTGCCTCACATATATCCTCCAGAACTGGAGTACCATCTCAGCTCCATATTTGTGGAGAAAGCCCCTCCGTTGGGACACTATGGCACTCGAAGCACCTCGGCATTGTCTGTGAAGACAAACGGGGAAGTTAGCTACTACGAGAGATATCAGGAAAATCAAGTGTGGAAAGAAGGAACAGTAACTTATCAGATTGTAGATGTCTGTAACTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TANGO2

Protein Analysis

270

Amino Acids

30.46

Weight (kDa)

5.01

Isoelectric Point (pI)

34.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TANGO2 PF05742 1 - 249 1.6e-75 Transport and Golgi organisation 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 137
Acc36I ACCTGC 1 cut(s) 137
AciI CCGC 2 cut(s) 314, 522
AclWI GGATC 3 cut(s) 324, 424, 437
AcoI YGGCCR 1 cut(s) 345
AcsI RAATTY 1 cut(s) 403
AfaI GTAC 1 cut(s) 629
AfiI CCNNNNNNNGG 3 cut(s) 343, 667, 668
AjnI CCWGG 1 cut(s) 336
AluBI AGCT 5 cut(s) 11, 220, 230, 639, 729
AluI AGCT 5 cut(s) 11, 220, 230, 639, 729
Alw26I GTCTC 2 cut(s) 424, 497
AlwI GGATC 3 cut(s) 324, 424, 437
Ama87I CYCGRG 1 cut(s) 425
AoxI GGCC 3 cut(s) 83, 345, 467
ApeKI GCWGC 1 cut(s) 55
ApoI RAATTY 1 cut(s) 403
ArsI GACNNNNNNTTYG 2 cut(s) 389, 421
AseI ATTAAT 1 cut(s) 545
AspS9I GGNCC 2 cut(s) 244, 363
AsuC2I CCSGG 2 cut(s) 426, 427
AsuHPI GGTGA 1 cut(s) 23
AvaI CYCGRG 1 cut(s) 425
AvaII GGWCC 2 cut(s) 244, 363
AxyI CCTNAGG 1 cut(s) 471
BaeI ACNNNNGTAYC 2 cut(s) 611, 644
BamHI GGATCC 1 cut(s) 429
BbsI GAAGAC 1 cut(s) 716
BbvI GCAGC 1 cut(s) 42
BccI CCATC 3 cut(s) 131, 170, 639
BciT130I CCWGG 1 cut(s) 338
BcnI CCSGG 2 cut(s) 426, 427
BcoDI GTCTC 2 cut(s) 424, 497
BfaI CTAG 3 cut(s) 360, 455, 485
BfuAI ACCTGC 1 cut(s) 137
BglII AGATCT 1 cut(s) 120
BisI GCNGC 2 cut(s) 56, 523
BlsI GCNGC 2 cut(s) 57, 524
Bme1390I CCNGG 3 cut(s) 338, 426, 427
Bme18I GGWCC 2 cut(s) 244, 363
BmeT110I CYCGRG 1 cut(s) 425
BmgT120I GGNCC 2 cut(s) 244, 363
BmiI GGNNCC 2 cut(s) 245, 431
BmrFI CCNGG 3 cut(s) 338, 426, 427
BmrI ACTGGG 1 cut(s) 29
BmuI ACTGGG 1 cut(s) 29
BpiI GAAGAC 1 cut(s) 716
BpmI CTGGAG 2 cut(s) 600, 644
BpuEI CTTGAG 1 cut(s) 210
BpuMI CCSGG 2 cut(s) 426, 427
BsaI GGTCTC 1 cut(s) 424
BsaJI CCNNGG 5 cut(s) 282, 366, 425, 464, 693
BsaWI WCCGGW 1 cut(s) 250
Bsc4I CCNNNNNNNGG 3 cut(s) 343, 667, 668
Bse1I ACTGG 2 cut(s) 35, 627
Bse21I CCTNAGG 1 cut(s) 471
BseBI CCWGG 1 cut(s) 338
BseDI CCNNGG 5 cut(s) 282, 366, 425, 464, 693
BseLI CCNNNNNNNGG 3 cut(s) 343, 667, 668
BseMII CTCAG 2 cut(s) 405, 649
BseNI ACTGG 2 cut(s) 35, 627
BseRI GAGGAG 1 cut(s) 323
BseXI GCAGC 1 cut(s) 42
BshFI GGCC 3 cut(s) 85, 347, 469
BsiHKCI CYCGRG 1 cut(s) 425
BsiSI CCGG 2 cut(s) 251, 426
BslFI GGGAC 5 cut(s) 80, 166, 257, 264, 684
BslI CCNNNNNNNGG 3 cut(s) 343, 667, 668
BsmAI GTCTC 2 cut(s) 424, 497
BsmFI GGGAC 5 cut(s) 80, 166, 257, 264, 684
BsnI GGCC 3 cut(s) 85, 347, 469
Bso31I GGTCTC 1 cut(s) 424
BsoBI CYCGRG 1 cut(s) 425
Bsp143I GATC 5 cut(s) 120, 316, 349, 429, 529
Bsp19I CCATGG 2 cut(s) 282, 366
BspACI CCGC 2 cut(s) 314, 522
BspANI GGCC 3 cut(s) 85, 347, 469
BspCNI CTCAG 2 cut(s) 406, 648
BspLI GGNNCC 2 cut(s) 245, 431
BspMI ACCTGC 1 cut(s) 137
BspPI GGATC 3 cut(s) 324, 424, 437
BspTNI GGTCTC 1 cut(s) 424
BsrI ACTGG 2 cut(s) 35, 627
BssECI CCNNGG 5 cut(s) 282, 366, 425, 464, 693
BssMI GATC 5 cut(s) 120, 316, 349, 429, 529
BssT1I CCWWGG 3 cut(s) 282, 366, 464
Bst2UI CCWGG 1 cut(s) 338
Bst4CI ACNGT 2 cut(s) 574, 775
Bst6I CTCTTC 2 cut(s) 127, 269
BstC8I GCNNGC 4 cut(s) 83, 162, 166, 222
BstDEI CTNAG 5 cut(s) 124, 231, 414, 471, 635
BstDSI CCRYGG 2 cut(s) 282, 366
BstKTI GATC 5 cut(s) 123, 319, 352, 432, 532
BstMAI GTCTC 2 cut(s) 424, 497
BstMBI GATC 5 cut(s) 120, 316, 349, 429, 529
BstMWI GCNNNNNNNGC 2 cut(s) 91, 687
BstNI CCWGG 1 cut(s) 338
BstSCI CCNGG 3 cut(s) 336, 424, 425
BstV1I GCAGC 1 cut(s) 42
BstV2I GAAGAC 1 cut(s) 716
BstX2I RGATCY 2 cut(s) 120, 429
BstXI CCANNNNNNTGG 1 cut(s) 649
BstYI RGATCY 2 cut(s) 120, 429
Bsu36I CCTNAGG 1 cut(s) 471
BsuRI GGCC 3 cut(s) 85, 347, 469
BtgI CCRYGG 2 cut(s) 282, 366
BtsIMutI CAGTG 1 cut(s) 411
BveI ACCTGC 1 cut(s) 137
Cac8I GCNNGC 4 cut(s) 83, 162, 166, 222
Cfr13I GGNCC 2 cut(s) 244, 363
Cfr9I CCCGGG 1 cut(s) 425
CsiI ACCWGGT 1 cut(s) 336
Csp6I GTAC 1 cut(s) 628
CviAII CATG 5 cut(s) 102, 156, 283, 367, 434
CviQI GTAC 1 cut(s) 628
DdeI CTNAG 5 cut(s) 124, 231, 414, 471, 635
DpnI GATC 5 cut(s) 122, 318, 351, 431, 531
DpnII GATC 5 cut(s) 120, 316, 349, 429, 529
EaeI YGGCCR 1 cut(s) 345
Eam1104I CTCTTC 2 cut(s) 127, 269
EarI CTCTTC 2 cut(s) 127, 269
EciI GGCGGA 1 cut(s) 329
Eco130I CCWWGG 3 cut(s) 282, 366, 464
Eco31I GGTCTC 1 cut(s) 424
Eco32I GATATC 1 cut(s) 743
Eco47I GGWCC 2 cut(s) 244, 363
Eco81I CCTNAGG 1 cut(s) 471
Eco88I CYCGRG 1 cut(s) 425
EcoO109I RGGNCCY 1 cut(s) 244
EcoRII CCWGG 1 cut(s) 336
EcoRV GATATC 1 cut(s) 743
EcoT14I CCWWGG 3 cut(s) 282, 366, 464
ErhI CCWWGG 3 cut(s) 282, 366, 464
FaeI CATG 5 cut(s) 105, 159, 286, 370, 437
FaqI GGGAC 5 cut(s) 80, 166, 257, 264, 684
FatI CATG 5 cut(s) 101, 155, 282, 366, 433
Fnu4HI GCNGC 2 cut(s) 56, 523
Fsp4HI GCNGC 2 cut(s) 56, 523
FspBI CTAG 3 cut(s) 360, 455, 485
GluI GCNGC 2 cut(s) 56, 523
GsuI CTGGAG 2 cut(s) 600, 644
HaeIII GGCC 3 cut(s) 85, 347, 469
HapII CCGG 2 cut(s) 251, 426
Hin1II CATG 5 cut(s) 105, 159, 286, 370, 437
HindIII AAGCTT 1 cut(s) 218
HinfI GANTC 4 cut(s) 258, 277, 458, 515
HpaII CCGG 2 cut(s) 251, 426
HphI GGTGA 1 cut(s) 23
Hpy166II GTNNAC 1 cut(s) 40
Hpy188I TCNGA 4 cut(s) 216, 500, 537, 786
Hpy188III TCNNGA 2 cut(s) 617, 746
Hpy8I GTNNAC 1 cut(s) 40
Hpy99I CGWCG 1 cut(s) 530
HpyAV CCTTC 6 cut(s) 55, 59, 104, 257, 385, 761
HpyCH4III ACNGT 2 cut(s) 574, 775
HpyCH4V TGCA 2 cut(s) 168, 449
HpyF10VI GCNNNNNNNGC 2 cut(s) 91, 687
HpyF3I CTNAG 5 cut(s) 124, 231, 414, 471, 635
Hsp92II CATG 5 cut(s) 105, 159, 286, 370, 437
Kzo9I GATC 5 cut(s) 120, 316, 349, 429, 529
LmnI GCTCC 1 cut(s) 644
Lsp1109I GCAGC 1 cut(s) 42
MabI ACCWGGT 1 cut(s) 336
MaeI CTAG 3 cut(s) 360, 455, 485
MaeIII GTNAC 4 cut(s) 376, 409, 775, 800
MalI GATC 5 cut(s) 122, 318, 351, 431, 531
MboI GATC 5 cut(s) 120, 316, 349, 429, 529
MboII GAAGA 4 cut(s) 144, 286, 524, 721
MflI RGATCY 2 cut(s) 120, 429
MluCI AATT 2 cut(s) 403, 542
MlyI GAGTC 1 cut(s) 286
MseI TTAA 3 cut(s) 333, 545, 576
MslI CAYNNNNRTG 1 cut(s) 647
MspA1I CMGCKG 1 cut(s) 522
MspI CCGG 2 cut(s) 251, 426
MspR9I CCNGG 3 cut(s) 338, 426, 427
MvaI CCWGG 1 cut(s) 338
MwoI GCNNNNNNNGC 2 cut(s) 91, 687
NciI CCSGG 2 cut(s) 426, 427
NcoI CCATGG 2 cut(s) 282, 366
NdeII GATC 5 cut(s) 120, 316, 349, 429, 529
NlaIII CATG 5 cut(s) 105, 159, 286, 370, 437
NlaIV GGNNCC 2 cut(s) 245, 431
NmeAIII GCCGAG 1 cut(s) 674
NmuCI GTSAC 1 cut(s) 409
PaqCI CACCTGC 1 cut(s) 137
PfeI GAWTC 3 cut(s) 258, 458, 515
PkrI GCNGC 2 cut(s) 57, 524
PleI GAGTC 1 cut(s) 285
PpsI GAGTC 1 cut(s) 285
PpuMI RGGWCCY 1 cut(s) 244
PshBI ATTAAT 1 cut(s) 545
Psp5II RGGWCCY 1 cut(s) 244
Psp6I CCWGG 1 cut(s) 336
PspGI CCWGG 1 cut(s) 336
PspN4I GGNNCC 2 cut(s) 245, 431
PspPI GGNCC 2 cut(s) 244, 363
PspPPI RGGWCCY 1 cut(s) 244
PsuI RGATCY 2 cut(s) 120, 429
RsaI GTAC 1 cut(s) 629
RsaNI GTAC 1 cut(s) 628
RseI CAYNNNNRTG 1 cut(s) 647
SaqAI TTAA 3 cut(s) 333, 545, 576
SatI GCNGC 2 cut(s) 56, 523
Sau3AI GATC 5 cut(s) 120, 316, 349, 429, 529
Sau96I GGNCC 2 cut(s) 244, 363
SchI GAGTC 1 cut(s) 286
ScrFI CCNGG 3 cut(s) 338, 426, 427
SexAI ACCWGGT 1 cut(s) 336
SinI GGWCC 2 cut(s) 244, 363
SmaI CCCGGG 1 cut(s) 427
SmiMI CAYNNNNRTG 1 cut(s) 647
SmlI CTYRAG 1 cut(s) 225
SmoI CTYRAG 1 cut(s) 225
Sse9I AATT 2 cut(s) 403, 542
SsiI CCGC 2 cut(s) 314, 522
SspMI CTAG 3 cut(s) 360, 455, 485
StyD4I CCNGG 3 cut(s) 336, 424, 425
StyI CCWWGG 3 cut(s) 282, 366, 464
TaaI ACNGT 2 cut(s) 574, 775
TaqI TCGA 3 cut(s) 256, 582, 685
TaqII GACCGA 1 cut(s) 403
TasI AATT 2 cut(s) 403, 542
TauI GCSGC 1 cut(s) 525
TfiI GAWTC 3 cut(s) 258, 458, 515
Tru1I TTAA 3 cut(s) 333, 545, 576
Tru9I TTAA 3 cut(s) 333, 545, 576
TscAI CASTG 1 cut(s) 418
TseFI GTSAC 1 cut(s) 409
TseI GCWGC 1 cut(s) 55
Tsp45I GTSAC 1 cut(s) 409
TspDTI ATGAA 1 cut(s) 312
TspGWI ACGGA 1 cut(s) 654
TspMI CCCGGG 1 cut(s) 425
TspRI CASTG 1 cut(s) 418
VpaK11BI GGWCC 2 cut(s) 244, 363
VspI ATTAAT 1 cut(s) 545
XapI RAATTY 1 cut(s) 403
XmaI CCCGGG 1 cut(s) 425
XspI CTAG 3 cut(s) 360, 455, 485
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.