RLG00000002635

Transport and Golgi organization 2 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0002621
Physical Location & Seq
Reverse (-)
37345155 .. 37345995
841 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002635

Sequence Viewer

Length: 501 bp
ATGGTAGCACCACCTGTACCTCTTTTGAGTCTGAGTTCTAGACATTGTTTAGAAGTGTTCATTTGGCAAGACCAGCTGTACCTTTCGGCTCTCCTTCTCTTACAAAACAGAGATAAACACCAAAACAGGCAAGTGAATGACCAGACTAAGATTAAGGATTTGTTATTTATTTATGGGTTATTGCTTATACATCTTCTCTTTTTTAAAATATTTAAAGGCCAAGGACCGGTAGACTGGTGGGAAGGTTGTGAGATATTAAGCTGGAGAGATGAGGTTGCAGGAGGGACACGGCTGGCTTGTTCAAGAGGACGGAGGGTTGCTAAAGAGCCGGAGAGACCTGCTGTGGTTTTCTTAGAGAGCTTGAAGAGTCCAAAGGAATTTGCAAAGGAGTTGGTTAAAGAGGCTCACCACTCACCACTCACCAGTTTAATGGGCTCAGCACTTGCGGCTAAATTTTCAGAAAAGAGCTTATTAAGTATGGAGAAGGTGAAATACCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TANGO2

Protein Analysis

167

Amino Acids

18.99

Weight (kDa)

9.17

Isoelectric Point (pI)

38.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 346
AccI GTMKAC 1 cut(s) 231
AciI CCGC 1 cut(s) 446
AcsI RAATTY 2 cut(s) 377, 452
AfaI GTAC 2 cut(s) 18, 80
AfiI CCNNNNNNNGG 1 cut(s) 226
AgeI ACCGGT 1 cut(s) 226
AgsI TTSAA 2 cut(s) 303, 364
AluBI AGCT 4 cut(s) 76, 261, 360, 468
AluI AGCT 4 cut(s) 76, 261, 360, 468
Alw26I GTCTC 1 cut(s) 328
AoxI GGCC 1 cut(s) 217
ApoI RAATTY 2 cut(s) 377, 452
AsiGI ACCGGT 1 cut(s) 226
AspS9I GGNCC 1 cut(s) 224
AsuHPI GGTGA 4 cut(s) 398, 405, 412, 499
AvaII GGWCC 1 cut(s) 224
BanII GRGCYC 1 cut(s) 437
BarI GAAGNNNNNNTAC 1 cut(s) 476
BceAI ACGGC 1 cut(s) 305
BcoDI GTCTC 1 cut(s) 328
BfaI CTAG 1 cut(s) 39
BfuAI ACCTGC 1 cut(s) 346
BisI GCNGC 1 cut(s) 447
BlpI GCTNAGC 1 cut(s) 436
BlsI GCNGC 1 cut(s) 448
Bme18I GGWCC 1 cut(s) 224
BmgT120I GGNCC 1 cut(s) 224
BpmI CTGGAG 1 cut(s) 283
Bpu1102I GCTNAGC 1 cut(s) 436
BsaI GGTCTC 1 cut(s) 328
BsaJI CCNNGG 1 cut(s) 220
BsaWI WCCGGW 1 cut(s) 226
Bsc4I CCNNNNNNNGG 1 cut(s) 226
Bse118I RCCGGY 1 cut(s) 226
Bse1I ACTGG 3 cut(s) 239, 423, 496
BseDI CCNNGG 1 cut(s) 220
BseLI CCNNNNNNNGG 1 cut(s) 226
BseMII CTCAG 2 cut(s) 23, 450
BseNI ACTGG 3 cut(s) 239, 423, 496
BshFI GGCC 1 cut(s) 219
BshTI ACCGGT 1 cut(s) 226
BsiSI CCGG 2 cut(s) 227, 329
BslFI GGGAC 1 cut(s) 298
BslI CCNNNNNNNGG 1 cut(s) 226
BsmAI GTCTC 1 cut(s) 328
BsmFI GGGAC 1 cut(s) 298
BsnI GGCC 1 cut(s) 219
Bso31I GGTCTC 1 cut(s) 328
Bsp1286I GDGCHC 1 cut(s) 437
Bsp1720I GCTNAGC 1 cut(s) 436
BspACI CCGC 1 cut(s) 446
BspANI GGCC 1 cut(s) 219
BspCNI CTCAG 2 cut(s) 24, 449
BspMI ACCTGC 1 cut(s) 346
BspTNI GGTCTC 1 cut(s) 328
BsrFI RCCGGY 1 cut(s) 226
BsrI ACTGG 3 cut(s) 239, 423, 496
BssAI RCCGGY 1 cut(s) 226
BssECI CCNNGG 1 cut(s) 220
BssT1I CCWWGG 1 cut(s) 220
Bst6I CTCTTC 1 cut(s) 359
BstC8I GCNNGC 1 cut(s) 294
BstDEI CTNAG 4 cut(s) 32, 147, 352, 436
BstMAI GTCTC 1 cut(s) 328
BstMWI GCNNNNNNNGC 2 cut(s) 73, 446
BstXI CCANNNNNNTGG 1 cut(s) 430
BsuRI GGCC 1 cut(s) 219
BveI ACCTGC 1 cut(s) 346
Cac8I GCNNGC 1 cut(s) 294
Cfr10I RCCGGY 1 cut(s) 226
Cfr13I GGNCC 1 cut(s) 224
Csp6I GTAC 2 cut(s) 17, 79
CspAI ACCGGT 1 cut(s) 226
CviQI GTAC 2 cut(s) 17, 79
DdeI CTNAG 4 cut(s) 32, 147, 352, 436
DraI TTTAAA 2 cut(s) 205, 214
Eam1104I CTCTTC 1 cut(s) 359
EarI CTCTTC 1 cut(s) 359
Eco130I CCWWGG 1 cut(s) 220
Eco24I GRGCYC 1 cut(s) 437
Eco31I GGTCTC 1 cut(s) 328
Eco47I GGWCC 1 cut(s) 224
EcoT14I CCWWGG 1 cut(s) 220
EcoT38I GRGCYC 1 cut(s) 437
ErhI CCWWGG 1 cut(s) 220
FaiI YATR 3 cut(s) 174, 188, 479
FaqI GGGAC 1 cut(s) 298
FblI GTMKAC 1 cut(s) 231
Fnu4HI GCNGC 1 cut(s) 447
FriOI GRGCYC 1 cut(s) 437
Fsp4HI GCNGC 1 cut(s) 447
FspBI CTAG 1 cut(s) 39
GluI GCNGC 1 cut(s) 447
GsuI CTGGAG 1 cut(s) 283
HaeIII GGCC 1 cut(s) 219
HapII CCGG 2 cut(s) 227, 329
HinfI GANTC 2 cut(s) 28, 367
HpaII CCGG 2 cut(s) 227, 329
HphI GGTGA 4 cut(s) 398, 405, 412, 499
Hpy166II GTNNAC 1 cut(s) 232
Hpy188I TCNGA 2 cut(s) 33, 460
Hpy188III TCNNGA 2 cut(s) 39, 303
Hpy8I GTNNAC 1 cut(s) 232
HpyAV CCTTC 3 cut(s) 104, 236, 478
HpyCH4V TGCA 2 cut(s) 278, 383
HpyF10VI GCNNNNNNNGC 2 cut(s) 73, 446
HpyF3I CTNAG 4 cut(s) 32, 147, 352, 436
MaeI CTAG 1 cut(s) 39
MboII GAAGA 2 cut(s) 185, 376
MhlI GDGCHC 1 cut(s) 437
MluCI AATT 2 cut(s) 377, 452
MlyI GAGTC 2 cut(s) 37, 376
MnlI CCTC 6 cut(s) 30, 265, 275, 299, 306, 394
MseI TTAA 7 cut(s) 153, 204, 213, 257, 396, 428, 473
MspA1I CMGCKG 1 cut(s) 76
MspI CCGG 2 cut(s) 227, 329
MwoI GCNNNNNNNGC 2 cut(s) 73, 446
PinAI ACCGGT 1 cut(s) 226
PkrI GCNGC 1 cut(s) 448
PleI GAGTC 2 cut(s) 36, 375
PpsI GAGTC 2 cut(s) 36, 375
PspPI GGNCC 1 cut(s) 224
PvuII CAGCTG 1 cut(s) 76
RsaI GTAC 2 cut(s) 18, 80
RsaNI GTAC 2 cut(s) 17, 79
SaqAI TTAA 7 cut(s) 153, 204, 213, 257, 396, 428, 473
SatI GCNGC 1 cut(s) 447
Sau96I GGNCC 1 cut(s) 224
SchI GAGTC 2 cut(s) 37, 376
SduI GDGCHC 1 cut(s) 437
SinI GGWCC 1 cut(s) 224
Sse9I AATT 2 cut(s) 377, 452
SsiI CCGC 1 cut(s) 446
SspI AATATT 1 cut(s) 210
SspMI CTAG 1 cut(s) 39
StyI CCWWGG 1 cut(s) 220
TasI AATT 2 cut(s) 377, 452
TauI GCSGC 1 cut(s) 449
Tru1I TTAA 7 cut(s) 153, 204, 213, 257, 396, 428, 473
Tru9I TTAA 7 cut(s) 153, 204, 213, 257, 396, 428, 473
TspDTI ATGAA 1 cut(s) 49
TspGWI ACGGA 1 cut(s) 325
VpaK11BI GGWCC 1 cut(s) 224
XapI RAATTY 2 cut(s) 377, 452
XbaI TCTAGA 1 cut(s) 38
XmiI GTMKAC 1 cut(s) 231
XspI CTAG 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.