Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8074068.1

Orthogroup ID

OG0002621

Physical Location & Seq

Genomic Coordinates Forward (+)

168 .. 529

Gene Structure 362 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8074068.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

atgtgtatagcggcgttcgtgtggcagtctcacccacgctaccccttcctcctcctcctcaacagggacgaatatttcaaccgggaaacggcggctttgcaatggtgggacgacaccctcgggatattgggcggaagagatgcggtggaaggtgggacatggctggcttgttccaaggatggtaaggtggcttttctcactaatgtcagagagctcaacagactcgtgcaatgcaagagcagaggagaactcccatttcttttcttgtcggtatgttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TANGO2

Protein Analysis

92

Amino Acids

10.54

Weight (kDa)

6.54

Isoelectric Point (pI)

25.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002621)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38260
fragaria_vesca	FvH4_2g16710 FvH4_2g16710 FvH4_2g16710 FvH4_5g25460 FvH4_5g25460
malus_domestica	MD05G1135200.v1.1 MD06G1010300.v1.1
prunus_persica	Prupe.8G179100_v2.0.a1
pyrus_communis	pycom05g13180
rosa_chinensis	RchiOBHm_Chr6g0280841 RchiOBHm_Chr7g0215641
rosa_laevigata	RLG00000002635 RLG00000002636 RLG00000013026
rosa_multiflora	Rmu_co8074068.1_g000001 Rmu_sc0000898.1_g000036 Rmu_sc0007602.1_g000001 Rmu_sc0023262.1_g000006 Rmu_ssc0000024.1_g000008
rosa_roxburghii	Rroxscaffold_3G00243960 Rroxscaffold_7G00187580
rosa_rugosa	Rorug06G0134900 Rorug06G0135000 Rorug07G0155800 Rorug07G0155800
rosa_samantha	Rh3CG366900 Rh6AG248300 Rh6BG249800 Rh6BG249900 Rh6CG251000 Rh6DG242600 Rh7AG292500 Rh7BG284800 Rh7CG312400 Rh7DG295700
rosa_wichuraiana	Rw0G020460 Rw4G008690 Rw6G021460 Rw7G024890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	11, 92, 132, 143
AfiI	CCNNNNNNNGG	2 cut(s)	64, 88
AgsI	TTSAA	1 cut(s)	79
AluBI	AGCT	1 cut(s)	214
AluI	AGCT	1 cut(s)	214
Alw21I	GWGCWC	1 cut(s)	216
Alw26I	GTCTC	1 cut(s)	33
Ama87I	CYCGRG	1 cut(s)	119
AsuC2I	CCSGG	1 cut(s)	83
AsuHPI	GGTGA	1 cut(s)	23
AvaI	CYCGRG	1 cut(s)	119
BanII	GRGCYC	1 cut(s)	216
BauI	CACGAG	1 cut(s)	224
Bbv12I	GWGCWC	1 cut(s)	216
BccI	CCATC	1 cut(s)	173
BceAI	ACGGC	1 cut(s)	105
BcnI	CCSGG	1 cut(s)	83
BcoDI	GTCTC	1 cut(s)	33
BisI	GCNGC	2 cut(s)	12, 93
BlsI	GCNGC	2 cut(s)	13, 94
Bme1390I	CCNGG	1 cut(s)	83
BmeT110I	CYCGRG	1 cut(s)	119
BmrFI	CCNGG	1 cut(s)	83
BmsI	GCATC	1 cut(s)	130
BplI	GAGNNNNNCTC	2 cut(s)	234, 266
BpuMI	CCSGG	1 cut(s)	83
BsaJI	CCNNGG	2 cut(s)	118, 174
Bsc4I	CCNNNNNNNGG	2 cut(s)	64, 88
Bse3DI	GCAATG	2 cut(s)	107, 236
BseDI	CCNNGG	2 cut(s)	118, 174
BseGI	GGATG	1 cut(s)	184
BseLI	CCNNNNNNNGG	2 cut(s)	64, 88
BseMI	GCAATG	2 cut(s)	107, 236
BseRI	GAGGAG	4 cut(s)	41, 44, 47, 258
BsiHKAI	GWGCWC	1 cut(s)	216
BsiHKCI	CYCGRG	1 cut(s)	119
BsiSI	CCGG	1 cut(s)	82
BslFI	GGGAC	3 cut(s)	80, 122, 169
BslI	CCNNNNNNNGG	2 cut(s)	64, 88
BsmAI	GTCTC	1 cut(s)	33
BsmFI	GGGAC	3 cut(s)	80, 122, 169
BsoBI	CYCGRG	1 cut(s)	119
Bsp1286I	GDGCHC	1 cut(s)	216
BspACI	CCGC	4 cut(s)	11, 92, 132, 143
BsrDI	GCAATG	2 cut(s)	107, 236
BssECI	CCNNGG	2 cut(s)	118, 174
BssSI	CACGAG	1 cut(s)	224
BssT1I	CCWWGG	1 cut(s)	174
Bst2BI	CACGAG	1 cut(s)	224
Bst6I	CTCTTC	1 cut(s)	130
BstC8I	GCNNGC	1 cut(s)	165
BstF5I	GGATG	1 cut(s)	184
BstMAI	GTCTC	1 cut(s)	33
BstSCI	CCNGG	1 cut(s)	81
BtsCI	GGATG	1 cut(s)	184
Cac8I	GCNNGC	1 cut(s)	165
CviAII	CATG	1 cut(s)	159
CviJI	RGCY	5 cut(s)	95, 163, 167, 191, 214
CviKI_1	RGCY	5 cut(s)	95, 163, 167, 191, 214
Eam1104I	CTCTTC	1 cut(s)	130
EarI	CTCTTC	1 cut(s)	130
EciI	GGCGGA	1 cut(s)	147
Ecl136II	GAGCTC	1 cut(s)	214
Eco130I	CCWWGG	1 cut(s)	174
Eco24I	GRGCYC	1 cut(s)	216
Eco53kI	GAGCTC	1 cut(s)	214
Eco88I	CYCGRG	1 cut(s)	119
EcoICRI	GAGCTC	1 cut(s)	214
EcoT14I	CCWWGG	1 cut(s)	174
EcoT38I	GRGCYC	1 cut(s)	216
ErhI	CCWWGG	1 cut(s)	174
FaeI	CATG	1 cut(s)	162
FaiI	YATR	3 cut(s)	8, 160, 274
FaqI	GGGAC	3 cut(s)	80, 122, 169
FatI	CATG	1 cut(s)	158
Fnu4HI	GCNGC	2 cut(s)	12, 93
FokI	GGATG	1 cut(s)	191
FriOI	GRGCYC	1 cut(s)	216
Fsp4HI	GCNGC	2 cut(s)	12, 93
GluI	GCNGC	2 cut(s)	12, 93
HapII	CCGG	1 cut(s)	82
Hin1II	CATG	1 cut(s)	162
HinfI	GANTC	1 cut(s)	222
HpaII	CCGG	1 cut(s)	82
HphI	GGTGA	1 cut(s)	23
Hpy188I	TCNGA	1 cut(s)	209
Hpy188III	TCNNGA	1 cut(s)	121
HpyAV	CCTTC	2 cut(s)	55, 143
HpyCH4V	TGCA	3 cut(s)	100, 229, 234
Hsp92II	CATG	1 cut(s)	162
LpnPI	CCDG	3 cut(s)	49, 95, 149
LweI	GCATC	1 cut(s)	130
MboII	GAAGA	1 cut(s)	147
MhlI	GDGCHC	1 cut(s)	216
MlyI	GAGTC	1 cut(s)	216
MnlI	CCTC	6 cut(s)	59, 62, 65, 68, 128, 236
MseI	TTAA	1 cut(s)	277
MspI	CCGG	1 cut(s)	82
MspR9I	CCNGG	1 cut(s)	83
NciI	CCSGG	1 cut(s)	83
NlaIII	CATG	1 cut(s)	162
PkrI	GCNGC	2 cut(s)	13, 94
PleI	GAGTC	1 cut(s)	216
PpsI	GAGTC	1 cut(s)	216
Psp124BI	GAGCTC	1 cut(s)	216
SacI	GAGCTC	1 cut(s)	216
SaqAI	TTAA	1 cut(s)	277
SatI	GCNGC	2 cut(s)	12, 93
SchI	GAGTC	1 cut(s)	216
ScrFI	CCNGG	1 cut(s)	83
SduI	GDGCHC	1 cut(s)	216
SetI	ASST	3 cut(s)	154, 189, 216
SfaNI	GCATC	1 cut(s)	130
SsiI	CCGC	4 cut(s)	11, 92, 132, 143
SspI	AATATT	1 cut(s)	74
SstI	GAGCTC	1 cut(s)	216
StyD4I	CCNGG	1 cut(s)	81
StyI	CCWWGG	1 cut(s)	174
TauI	GCSGC	2 cut(s)	14, 95
Tru1I	TTAA	1 cut(s)	277
Tru9I	TTAA	1 cut(s)	277

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.