Rh6CG251000

Transport and Golgi organisation 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0002621
Physical Location & Seq
Forward (+)
42147747 .. 42149891
2145 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG251000.1

Sequence Viewer

Length: 603 bp
ATGTGTATAGCGGCGTTCGTGTGGCAGTCTCACCCACGCTACCCCTGCCTCCTCCTCCTCAACAGGGACGAATATTTCAACCGGGAAACGGCGGCTTTGCAATGGTGGGACGACAACCTAGGGATATTGGGCGGAAGAGATGCGGTGGAAGGTGGGACATGGCTGGCTTGTTCCAAGGATGGTAAGGTGGCTTTTCTCACTAATGTCAGAGAGCTCAACAGACTTGTGCAATGCAACAGCAGAGGAGAACTCCCATCTCGTTTCTTGTCGGGCAAAAAGAGTCCGATGGAATTTGCAGAGGAAGTTGTTGAGGAGGCAGATAAGTACAATGGGTTTAACCTGATATTGGCTGATCTTCGTTCTAAGACCATGCTTTATGTAACCAACAGACCAAAGGAGGAAAAAAAGTTTATCACTGAGGTTTCACCGGGGATTCATGTATTGACAAATGATGCAATGCTTGATTCTCCTTGGCCTAAGGTAAGAACTAAATGGCATGTCGTTTTGGCTTGTCAGTTGGGACGCTTCAATTTTAGCACAAATTTATCACATAATCAACTAATTCTTTGCTGCATCGTTGGTTTGGTGACATTTACATTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TANGO2

Protein Analysis

200

Amino Acids

22.78

Weight (kDa)

7.58

Isoelectric Point (pI)

34.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TANGO2 PF05742 1 - 163 1.4e-55 Transport and Golgi organisation 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 601
AciI CCGC 4 cut(s) 11, 92, 132, 143
AcsI RAATTY 2 cut(s) 290, 541
AfaI GTAC 1 cut(s) 326
AfiI CCNNNNNNNGG 3 cut(s) 64, 88, 346
AgsI TTSAA 2 cut(s) 79, 529
AluBI AGCT 1 cut(s) 214
AluI AGCT 1 cut(s) 214
Alw21I GWGCWC 1 cut(s) 216
Alw26I GTCTC 1 cut(s) 33
AoxI GGCC 1 cut(s) 473
ApeKI GCWGC 1 cut(s) 570
ApoI RAATTY 2 cut(s) 290, 541
AspA2I CCTAGG 1 cut(s) 118
AsuC2I CCSGG 2 cut(s) 83, 429
AsuHPI GGTGA 3 cut(s) 23, 417, 598
AvrII CCTAGG 1 cut(s) 118
AxyI CCTNAGG 1 cut(s) 477
BanII GRGCYC 1 cut(s) 216
Bbv12I GWGCWC 1 cut(s) 216
BbvI GCAGC 1 cut(s) 557
BccI CCATC 3 cut(s) 173, 262, 280
BceAI ACGGC 1 cut(s) 105
BcnI CCSGG 2 cut(s) 83, 429
BcoDI GTCTC 1 cut(s) 33
BfaI CTAG 1 cut(s) 119
BisI GCNGC 3 cut(s) 12, 93, 571
BlnI CCTAGG 1 cut(s) 118
BlsI GCNGC 3 cut(s) 13, 94, 572
Bme1390I CCNGG 2 cut(s) 83, 429
BmrFI CCNGG 2 cut(s) 83, 429
BmsI GCATC 3 cut(s) 130, 442, 582
BplI GAGNNNNNCTC 2 cut(s) 234, 266
BpuMI CCSGG 2 cut(s) 83, 429
BsaJI CCNNGG 4 cut(s) 118, 174, 428, 470
Bsc4I CCNNNNNNNGG 3 cut(s) 64, 88, 346
Bse21I CCTNAGG 1 cut(s) 477
Bse3DI GCAATG 3 cut(s) 107, 236, 462
BseDI CCNNGG 4 cut(s) 118, 174, 428, 470
BseGI GGATG 1 cut(s) 184
BseLI CCNNNNNNNGG 3 cut(s) 64, 88, 346
BseMI GCAATG 3 cut(s) 107, 236, 462
BseMII CTCAG 1 cut(s) 408
BseRI GAGGAG 5 cut(s) 41, 44, 47, 258, 326
BseXI GCAGC 1 cut(s) 557
BshFI GGCC 1 cut(s) 475
BsiHKAI GWGCWC 1 cut(s) 216
BsiSI CCGG 2 cut(s) 82, 428
BslFI GGGAC 4 cut(s) 80, 122, 169, 534
BslI CCNNNNNNNGG 3 cut(s) 64, 88, 346
BsmAI GTCTC 1 cut(s) 33
BsmFI GGGAC 4 cut(s) 80, 122, 169, 534
BsnI GGCC 1 cut(s) 475
Bsp1286I GDGCHC 1 cut(s) 216
Bsp143I GATC 1 cut(s) 352
BspACI CCGC 4 cut(s) 11, 92, 132, 143
BspANI GGCC 1 cut(s) 475
BspCNI CTCAG 1 cut(s) 409
BsrDI GCAATG 3 cut(s) 107, 236, 462
BssECI CCNNGG 4 cut(s) 118, 174, 428, 470
BssMI GATC 1 cut(s) 352
BssT1I CCWWGG 3 cut(s) 118, 174, 470
Bst6I CTCTTC 1 cut(s) 130
BstC8I GCNNGC 1 cut(s) 165
BstDEI CTNAG 3 cut(s) 363, 417, 477
BstF5I GGATG 1 cut(s) 184
BstKTI GATC 1 cut(s) 355
BstMAI GTCTC 1 cut(s) 33
BstMBI GATC 1 cut(s) 352
BstMWI GCNNNNNNNGC 1 cut(s) 45
BstNSI RCATGY 1 cut(s) 500
BstSCI CCNGG 2 cut(s) 81, 427
BstV1I GCAGC 1 cut(s) 557
Bsu36I CCTNAGG 1 cut(s) 477
BsuRI GGCC 1 cut(s) 475
BtsCI GGATG 1 cut(s) 184
BtsIMutI CAGTG 1 cut(s) 414
Cac8I GCNNGC 1 cut(s) 165
CseI GACGC 1 cut(s) 531
Csp6I GTAC 1 cut(s) 325
CviAII CATG 4 cut(s) 159, 370, 437, 497
CviJI RGCY 8 cut(s) 95, 163, 167, 191, 214, 350, 475, 509
CviKI_1 RGCY 8 cut(s) 95, 163, 167, 191, 214, 350, 475, 509
CviQI GTAC 1 cut(s) 325
DdeI CTNAG 3 cut(s) 363, 417, 477
DpnI GATC 1 cut(s) 354
DpnII GATC 1 cut(s) 352
Eam1104I CTCTTC 1 cut(s) 130
EarI CTCTTC 1 cut(s) 130
EciI GGCGGA 1 cut(s) 147
Ecl136II GAGCTC 1 cut(s) 214
Eco130I CCWWGG 3 cut(s) 118, 174, 470
Eco24I GRGCYC 1 cut(s) 216
Eco53kI GAGCTC 1 cut(s) 214
Eco81I CCTNAGG 1 cut(s) 477
EcoICRI GAGCTC 1 cut(s) 214
EcoT14I CCWWGG 3 cut(s) 118, 174, 470
EcoT38I GRGCYC 1 cut(s) 216
ErhI CCWWGG 3 cut(s) 118, 174, 470
FaeI CATG 4 cut(s) 162, 373, 440, 500
FaiI YATR 8 cut(s) 8, 160, 371, 378, 438, 498, 552, 601
FaqI GGGAC 4 cut(s) 80, 122, 169, 534
FatI CATG 4 cut(s) 158, 369, 436, 496
Fnu4HI GCNGC 3 cut(s) 12, 93, 571
FokI GGATG 1 cut(s) 191
FriOI GRGCYC 1 cut(s) 216
Fsp4HI GCNGC 3 cut(s) 12, 93, 571
FspBI CTAG 1 cut(s) 119
GluI GCNGC 3 cut(s) 12, 93, 571
HaeIII GGCC 1 cut(s) 475
HapII CCGG 2 cut(s) 82, 428
HgaI GACGC 1 cut(s) 531
Hin1II CATG 4 cut(s) 162, 373, 440, 500
HinfI GANTC 3 cut(s) 280, 433, 464
HpaII CCGG 2 cut(s) 82, 428
HphI GGTGA 3 cut(s) 23, 417, 598
Hpy188I TCNGA 2 cut(s) 209, 285
HpyAV CCTTC 1 cut(s) 143
HpyCH4V TGCA 6 cut(s) 100, 229, 234, 296, 455, 573
HpyF10VI GCNNNNNNNGC 1 cut(s) 45
HpyF3I CTNAG 3 cut(s) 363, 417, 477
Hsp92II CATG 4 cut(s) 162, 373, 440, 500
Kzo9I GATC 1 cut(s) 352
LpnPI CCDG 6 cut(s) 49, 58, 95, 149, 353, 441
Lsp1109I GCAGC 1 cut(s) 557
LweI GCATC 3 cut(s) 130, 442, 582
MaeI CTAG 1 cut(s) 119
MaeIII GTNAC 2 cut(s) 379, 586
MalI GATC 1 cut(s) 354
MboI GATC 1 cut(s) 352
MboII GAAGA 2 cut(s) 147, 347
MhlI GDGCHC 1 cut(s) 216
MluCI AATT 4 cut(s) 290, 529, 541, 561
MlyI GAGTC 1 cut(s) 289
MseI TTAA 1 cut(s) 336
MspI CCGG 2 cut(s) 82, 428
MspR9I CCNGG 2 cut(s) 83, 429
MwoI GCNNNNNNNGC 1 cut(s) 45
NciI CCSGG 2 cut(s) 83, 429
NdeII GATC 1 cut(s) 352
NlaIII CATG 4 cut(s) 162, 373, 440, 500
NmuCI GTSAC 1 cut(s) 586
NspI RCATGY 1 cut(s) 500
PfeI GAWTC 2 cut(s) 433, 464
PkrI GCNGC 3 cut(s) 13, 94, 572
PleI GAGTC 1 cut(s) 288
PpsI GAGTC 1 cut(s) 288
PsiI TTATAA 1 cut(s) 601
Psp124BI GAGCTC 1 cut(s) 216
RsaI GTAC 1 cut(s) 326
RsaNI GTAC 1 cut(s) 325
SacI GAGCTC 1 cut(s) 216
SaqAI TTAA 1 cut(s) 336
SatI GCNGC 3 cut(s) 12, 93, 571
Sau3AI GATC 1 cut(s) 352
SchI GAGTC 1 cut(s) 289
ScrFI CCNGG 2 cut(s) 83, 429
SduI GDGCHC 1 cut(s) 216
SetI ASST 7 cut(s) 120, 154, 189, 216, 342, 423, 483
SfaNI GCATC 3 cut(s) 130, 442, 582
Sse9I AATT 4 cut(s) 290, 529, 541, 561
SsiI CCGC 4 cut(s) 11, 92, 132, 143
SspI AATATT 1 cut(s) 74
SspMI CTAG 1 cut(s) 119
SstI GAGCTC 1 cut(s) 216
StyD4I CCNGG 2 cut(s) 81, 427
StyI CCWWGG 3 cut(s) 118, 174, 470
TasI AATT 4 cut(s) 290, 529, 541, 561
TatI WGTACW 1 cut(s) 324
TauI GCSGC 2 cut(s) 14, 95
TfiI GAWTC 2 cut(s) 433, 464
Tru1I TTAA 1 cut(s) 336
Tru9I TTAA 1 cut(s) 336
TscAI CASTG 1 cut(s) 421
TseFI GTSAC 1 cut(s) 586
TseI GCWGC 1 cut(s) 570
Tsp45I GTSAC 1 cut(s) 586
TspDTI ATGAA 1 cut(s) 425
TspRI CASTG 1 cut(s) 421
XapI RAATTY 2 cut(s) 290, 541
XceI RCATGY 1 cut(s) 500
XmaJI CCTAGG 1 cut(s) 118
XspI CTAG 1 cut(s) 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.