Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0023262.1

Orthogroup ID

OG0002621

Physical Location & Seq

Genomic Coordinates Reverse (-)

31465 .. 35034

Gene Structure 3570 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0023262.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1317 bp

atggaatttgcggaggaagttgttgaggaggcagataaatacaatgggtttaacctgatattggctgatctttgttctaagaccatgctttatgtaaccaacataccaaaggaggaaaaaaagtttatcactgaggtttcaccggggattcatgtattgacaaatgatgcaatgcttgattctccttggcctaagtctcaacgacttagcaatagtttcaaagagatgctcaacaagtatggagatgatgaagtttcgttaaaggaaatggctctacgactaatgacagacgagaccagagacgacaaaagcctgctaccttgcatttattctccagaagtagaatacgaactaagttccatatatattgaatatgcccctgcattggggtattatggtactagaagcactgaagcagtgtctgtcaatacaaatggggaagtcaccttttatgagagatttatagctggggattggcatgaaaggaccgagaccttccagattgaagaggagataggccttgccgaccccagtggtggcaacttttctagcacaagtgcacgggttgcagccacaatgctcgccgcaggagcatttcttgtggttgtccacagtcgcagggtcggtcctgaagcacttctgcagtgtcctgcgaatacaactcggatcaaagagagagacgaagaggaagtgaatggtaagcatacatggttcagtacggttttgaagtttggtgttggcccttctgcctctggtggtgccttctctttctctgctcaacctactcgagatttacctatgccttcttcttcactgctgaaaaagaagaagccagttattcgtcggctagagcgatcatctgctgaaattgcttctcagggtaccgtgcatatcacggcggagatggaaggaatggatcaagaggttttagagccgaacaaggctagtgagttggcatcggtggaaccttctaacccgggttctcaacctcctgccacgcaaactggtcagaagcaaactttggtttacaagaaaagaggtcgagaagaggtaactgttccatcccctaagaaattcaaaactattttgggtggtaagcttctcactctccatgcggaagctcttggtttggctgaagctgaggatgatgtcgccctagtgacactgaagaagaggtcgggaagaccgttgggaagcaagaacaagggtcccaggtctcaaaagaaggttggtttgacacctttgcgtcttaactattcttctactactactgctcaggaggttggccctaaagctaagggcaagggaaaactctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TANGO2

Protein Analysis

438

Amino Acids

48.06

Weight (kDa)

6.2

Isoelectric Point (pI)

47.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002621)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38260
fragaria_vesca	FvH4_2g16710 FvH4_2g16710 FvH4_2g16710 FvH4_5g25460 FvH4_5g25460
malus_domestica	MD05G1135200.v1.1 MD06G1010300.v1.1
prunus_persica	Prupe.8G179100_v2.0.a1
pyrus_communis	pycom05g13180
rosa_chinensis	RchiOBHm_Chr6g0280841 RchiOBHm_Chr7g0215641
rosa_laevigata	RLG00000002635 RLG00000002636 RLG00000013026
rosa_multiflora	Rmu_co8074068.1_g000001 Rmu_sc0000898.1_g000036 Rmu_sc0007602.1_g000001 Rmu_sc0023262.1_g000006 Rmu_ssc0000024.1_g000008
rosa_roxburghii	Rroxscaffold_3G00243960 Rroxscaffold_7G00187580
rosa_rugosa	Rorug06G0134900 Rorug06G0135000 Rorug07G0155800 Rorug07G0155800
rosa_samantha	Rh3CG366900 Rh6AG248300 Rh6BG249800 Rh6BG249900 Rh6CG251000 Rh6DG242600 Rh7AG292500 Rh7BG284800 Rh7CG312400 Rh7DG295700
rosa_wichuraiana	Rw0G020460 Rw4G008690 Rw6G021460 Rw7G024890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	881
AccB1I	GGYRCC	2 cut(s)	758, 881
AciI	CCGC	4 cut(s)	11, 585, 899, 1115
AclWI	GGATC	2 cut(s)	674, 924
AcsI	RAATTY	2 cut(s)	5, 1073
AcuI	CTGAAG	4 cut(s)	432, 651, 1155, 1187
AfaI	GTAC	3 cut(s)	400, 718, 883
AfiI	CCNNNNNNNGG	4 cut(s)	61, 385, 386, 536
AgsI	TTSAA	5 cut(s)	220, 371, 506, 727, 1078
AjnI	CCWGG	1 cut(s)	1211
AjuI	GAANNNNNNNTTGG	2 cut(s)	1004, 1036
AluBI	AGCT	5 cut(s)	467, 1099, 1121, 1139, 1295
AluI	AGCT	5 cut(s)	467, 1099, 1121, 1139, 1295
Alw21I	GWGCWC	1 cut(s)	562
Alw26I	GTCTC	6 cut(s)	201, 287, 294, 485, 672, 1221
Alw44I	GTGCAC	1 cut(s)	558
AlwI	GGATC	2 cut(s)	674, 924
AlwNI	CAGNNNCTG	1 cut(s)	422
Ama87I	CYCGRG	2 cut(s)	786, 976
AoxI	GGCC	4 cut(s)	188, 517, 739, 1285
ApaLI	GTGCAC	1 cut(s)	558
ApeKI	GCWGC	1 cut(s)	569
ApoI	RAATTY	2 cut(s)	5, 1073
Asp700I	GAANNNNTTC	1 cut(s)	636
Asp718I	GGTACC	1 cut(s)	881
AspS9I	GGNCC	5 cut(s)	486, 626, 740, 1208, 1286
AsuC2I	CCSGG	3 cut(s)	144, 977, 978
AsuHPI	GGTGA	2 cut(s)	132, 436
AvaI	CYCGRG	2 cut(s)	786, 976
AvaII	GGWCC	3 cut(s)	486, 626, 1208
BaeGI	GKGCMC	1 cut(s)	562
BanI	GGYRCC	2 cut(s)	758, 881
BbsI	GAAGAC	1 cut(s)	1189
Bbv12I	GWGCWC	1 cut(s)	562
BbvCI	CCTCAGC	1 cut(s)	1140
BbvI	GCAGC	1 cut(s)	581
BccI	CCATC	2 cut(s)	898, 1069
BceAI	ACGGC	1 cut(s)	912
BciT130I	CCWGG	1 cut(s)	1213
BcnI	CCSGG	3 cut(s)	144, 977, 978
BcoDI	GTCTC	6 cut(s)	201, 287, 294, 485, 672, 1221
BfaI	CTAG	6 cut(s)	402, 549, 848, 945, 1157, 1315
BfmI	CTRYAG	1 cut(s)	641
BisI	GCNGC	2 cut(s)	570, 585
BlsI	GCNGC	2 cut(s)	571, 586
Bme1390I	CCNGG	4 cut(s)	144, 977, 978, 1213
Bme18I	GGWCC	3 cut(s)	486, 626, 1208
BmeT110I	CYCGRG	2 cut(s)	786, 976
BmgT120I	GGNCC	5 cut(s)	486, 626, 740, 1208, 1286
BmiI	GGNNCC	5 cut(s)	760, 883, 966, 1209, 1210
BmrFI	CCNGG	4 cut(s)	144, 977, 978, 1213
BmrI	ACTGGG	1 cut(s)	525
BmsI	GCATC	3 cut(s)	157, 216, 965
BmuI	ACTGGG	1 cut(s)	525
BpiI	GAAGAC	1 cut(s)	1189
BpmI	CTGGAG	1 cut(s)	318
Bpu10I	CCTNAGC	3 cut(s)	1140, 1275, 1296
BpuMI	CCSGG	3 cut(s)	144, 977, 978
BsaI	GGTCTC	3 cut(s)	287, 485, 1221
BsaJI	CCNNGG	4 cut(s)	143, 185, 976, 1211
Bsc4I	CCNNNNNNNGG	4 cut(s)	61, 385, 386, 536
Bse1I	ACTGG	3 cut(s)	531, 833, 1009
Bse3DI	GCAATG	1 cut(s)	177
BseBI	CCWGG	1 cut(s)	1213
BseDI	CCNNGG	4 cut(s)	143, 185, 976, 1211
BseGI	GGATG	2 cut(s)	1061, 1150
BseLI	CCNNNNNNNGG	4 cut(s)	61, 385, 386, 536
BseMI	GCAATG	1 cut(s)	177
BseMII	CTCAG	4 cut(s)	123, 890, 1131, 1289
BseNI	ACTGG	3 cut(s)	531, 833, 1009
BseRI	GAGGAG	2 cut(s)	41, 524
BseSI	GKGCMC	1 cut(s)	562
BseXI	GCAGC	1 cut(s)	581
BseYI	CCCAGC	1 cut(s)	467
BshFI	GGCC	4 cut(s)	190, 519, 741, 1287
BshNI	GGYRCC	2 cut(s)	758, 881
BsiHKAI	GWGCWC	1 cut(s)	562
BsiHKCI	CYCGRG	2 cut(s)	786, 976
BsiSI	CCGG	2 cut(s)	143, 977
BslFI	GGGAC	1 cut(s)	1194
BslI	CCNNNNNNNGG	4 cut(s)	61, 385, 386, 536
BsmAI	GTCTC	6 cut(s)	201, 287, 294, 485, 672, 1221
BsmBI	CGTCTC	2 cut(s)	294, 672
BsmFI	GGGAC	1 cut(s)	1194
BsnI	GGCC	4 cut(s)	190, 519, 741, 1287
Bso31I	GGTCTC	3 cut(s)	287, 485, 1221
BsoBI	CYCGRG	2 cut(s)	786, 976
Bsp1286I	GDGCHC	1 cut(s)	562
Bsp143I	GATC	4 cut(s)	67, 666, 854, 916
BspACI	CCGC	4 cut(s)	11, 585, 899, 1115
BspANI	GGCC	4 cut(s)	190, 519, 741, 1287
BspCNI	CTCAG	4 cut(s)	124, 889, 1132, 1288
BspLI	GGNNCC	5 cut(s)	760, 883, 966, 1209, 1210
BspMAI	CTGCAG	1 cut(s)	645
BspPI	GGATC	2 cut(s)	674, 924
BspT107I	GGYRCC	2 cut(s)	758, 881
BspTNI	GGTCTC	3 cut(s)	287, 485, 1221
BsrDI	GCAATG	1 cut(s)	177
BsrI	ACTGG	3 cut(s)	531, 833, 1009
BssECI	CCNNGG	4 cut(s)	143, 185, 976, 1211
BssMI	GATC	4 cut(s)	67, 666, 854, 916
BssT1I	CCWWGG	1 cut(s)	185
Bst2UI	CCWGG	1 cut(s)	1213
Bst4CI	ACNGT	5 cut(s)	614, 721, 886, 1057, 1188
Bst6I	CTCTTC	4 cut(s)	501, 678, 1041, 1166
BstAPI	GCANNNNNTGC	1 cut(s)	566
BstC8I	GCNNGC	2 cut(s)	314, 582
BstF5I	GGATG	2 cut(s)	1061, 1150
BstKTI	GATC	4 cut(s)	70, 669, 857, 919
BstMAI	GTCTC	6 cut(s)	201, 287, 294, 485, 672, 1221
BstMBI	GATC	4 cut(s)	67, 666, 854, 916
BstMWI	GCNNNNNNNGC	3 cut(s)	566, 590, 869
BstNI	CCWGG	1 cut(s)	1213
BstSCI	CCNGG	4 cut(s)	142, 975, 976, 1211
BstSFI	CTRYAG	1 cut(s)	641
BstSLI	GKGCMC	1 cut(s)	562
BstV1I	GCAGC	1 cut(s)	581
BstV2I	GAAGAC	1 cut(s)	1189
BsuRI	GGCC	4 cut(s)	190, 519, 741, 1287
BtsCI	GGATG	2 cut(s)	1061, 1150
BtsI	GCAGTG	3 cut(s)	423, 650, 812
BtsIMutI	CAGTG	7 cut(s)	129, 408, 423, 538, 650, 812, 1163
Cac8I	GCNNGC	2 cut(s)	314, 582
CaiI	CAGNNNCTG	1 cut(s)	422
Cfr13I	GGNCC	5 cut(s)	486, 626, 740, 1208, 1286
Cfr9I	CCCGGG	1 cut(s)	976
CseI	GACGC	1 cut(s)	1235
Csp6I	GTAC	3 cut(s)	399, 717, 882
CviAII	CATG	5 cut(s)	85, 152, 479, 708, 1112
CviQI	GTAC	3 cut(s)	399, 717, 882
DpnI	GATC	4 cut(s)	69, 668, 856, 918
DpnII	GATC	4 cut(s)	67, 666, 854, 916
Eam1104I	CTCTTC	4 cut(s)	501, 678, 1041, 1166
EarI	CTCTTC	4 cut(s)	501, 678, 1041, 1166
EciI	GGCGGA	1 cut(s)	914
Eco130I	CCWWGG	1 cut(s)	185
Eco147I	AGGCCT	1 cut(s)	519
Eco31I	GGTCTC	3 cut(s)	287, 485, 1221
Eco47I	GGWCC	3 cut(s)	486, 626, 1208
Eco57I	CTGAAG	4 cut(s)	432, 651, 1155, 1187
Eco88I	CYCGRG	2 cut(s)	786, 976
EcoO109I	RGGNCCY	1 cut(s)	1208
EcoRII	CCWGG	1 cut(s)	1211
EcoT14I	CCWWGG	1 cut(s)	185
ErhI	CCWWGG	1 cut(s)	185
Esp3I	CGTCTC	2 cut(s)	294, 672
FaeI	CATG	5 cut(s)	88, 155, 482, 711, 1115
FaqI	GGGAC	1 cut(s)	1194
FatI	CATG	5 cut(s)	84, 151, 478, 707, 1111
Fnu4HI	GCNGC	2 cut(s)	570, 585
FokI	GGATG	2 cut(s)	1048, 1157
Fsp4HI	GCNGC	2 cut(s)	570, 585
FspBI	CTAG	6 cut(s)	402, 549, 848, 945, 1157, 1315
GluI	GCNGC	2 cut(s)	570, 585
GsaI	CCCAGC	1 cut(s)	471
GsuI	CTGGAG	1 cut(s)	318
HaeIII	GGCC	4 cut(s)	190, 519, 741, 1287
HapII	CCGG	2 cut(s)	143, 977
HgaI	GACGC	1 cut(s)	1235
Hin1II	CATG	5 cut(s)	88, 155, 482, 711, 1115
HindIII	AAGCTT	1 cut(s)	1097
HinfI	GANTC	2 cut(s)	148, 179
HpaII	CCGG	2 cut(s)	143, 977
HphI	GGTGA	2 cut(s)	132, 436
Hpy166II	GTNNAC	3 cut(s)	560, 610, 1027
Hpy188I	TCNGA	2 cut(s)	666, 1011
Hpy188III	TCNNGA	8 cut(s)	335, 499, 629, 788, 920, 1043, 1179, 1277
Hpy8I	GTNNAC	3 cut(s)	560, 610, 1027
Hpy99I	CGWCG	1 cut(s)	846
HpyAV	CCTTC	7 cut(s)	505, 753, 772, 813, 902, 978, 1219
HpyCH4III	ACNGT	5 cut(s)	614, 721, 886, 1057, 1188
HpyCH4V	TGCA	7 cut(s)	170, 324, 383, 560, 569, 643, 889
HpyF10VI	GCNNNNNNNGC	3 cut(s)	566, 590, 869
Hsp92II	CATG	5 cut(s)	88, 155, 482, 711, 1115
KflI	GGGWCCC	1 cut(s)	1208
KpnI	GGTACC	1 cut(s)	885
Kzo9I	GATC	4 cut(s)	67, 666, 854, 916
LmnI	GCTCC	1 cut(s)	590
Lsp1109I	GCAGC	1 cut(s)	581
LweI	GCATC	3 cut(s)	157, 216, 965
MaeI	CTAG	6 cut(s)	402, 549, 848, 945, 1157, 1315
MaeIII	GTNAC	4 cut(s)	94, 442, 1051, 1159
MalI	GATC	4 cut(s)	69, 668, 856, 918
MboI	GATC	4 cut(s)	67, 666, 854, 916
MhlI	GDGCHC	1 cut(s)	562
MluCI	AATT	3 cut(s)	5, 867, 1073
MroXI	GAANNNNTTC	1 cut(s)	636
MseI	TTAA	3 cut(s)	51, 260, 1251
MspI	CCGG	2 cut(s)	143, 977
MspR9I	CCNGG	4 cut(s)	144, 977, 978, 1213
MvaI	CCWGG	1 cut(s)	1213
MwoI	GCNNNNNNNGC	3 cut(s)	566, 590, 869
NciI	CCSGG	3 cut(s)	144, 977, 978
NdeII	GATC	4 cut(s)	67, 666, 854, 916
NlaIII	CATG	5 cut(s)	88, 155, 482, 711, 1115
NlaIV	GGNNCC	5 cut(s)	760, 883, 966, 1209, 1210
NmuCI	GTSAC	2 cut(s)	442, 1159
PaeR7I	CTCGAG	1 cut(s)	786
PceI	AGGCCT	1 cut(s)	519
PcsI	WCGNNNNNNNCGW	2 cut(s)	850, 1184
PdmI	GAANNNNTTC	1 cut(s)	636
PfeI	GAWTC	2 cut(s)	148, 179
PkrI	GCNGC	2 cut(s)	571, 586
PpuMI	RGGWCCY	1 cut(s)	1208
Psp5II	RGGWCCY	1 cut(s)	1208
Psp6I	CCWGG	1 cut(s)	1211
PspFI	CCCAGC	1 cut(s)	467
PspGI	CCWGG	1 cut(s)	1211
PspN4I	GGNNCC	5 cut(s)	760, 883, 966, 1209, 1210
PspPI	GGNCC	5 cut(s)	486, 626, 740, 1208, 1286
PspPPI	RGGWCCY	1 cut(s)	1208
PstI	CTGCAG	1 cut(s)	645
PstNI	CAGNNNCTG	1 cut(s)	422
RsaI	GTAC	3 cut(s)	400, 718, 883
RsaNI	GTAC	3 cut(s)	399, 717, 882
SaqAI	TTAA	3 cut(s)	51, 260, 1251
SatI	GCNGC	2 cut(s)	570, 585
Sau3AI	GATC	4 cut(s)	67, 666, 854, 916
Sau96I	GGNCC	5 cut(s)	486, 626, 740, 1208, 1286
ScrFI	CCNGG	4 cut(s)	144, 977, 978, 1213
SduI	GDGCHC	1 cut(s)	562
SfaNI	GCATC	3 cut(s)	157, 216, 965
SfcI	CTRYAG	1 cut(s)	641
Sfr274I	CTCGAG	1 cut(s)	786
SinI	GGWCC	3 cut(s)	486, 626, 1208
SlaI	CTCGAG	1 cut(s)	786
SmaI	CCCGGG	1 cut(s)	978
SmlI	CTYRAG	1 cut(s)	786
SmoI	CTYRAG	1 cut(s)	786
Sse9I	AATT	3 cut(s)	5, 867, 1073
SseBI	AGGCCT	1 cut(s)	519
SsiI	CCGC	4 cut(s)	11, 585, 899, 1115
SspMI	CTAG	6 cut(s)	402, 549, 848, 945, 1157, 1315
StuI	AGGCCT	1 cut(s)	519
StyD4I	CCNGG	4 cut(s)	142, 975, 976, 1211
StyI	CCWWGG	1 cut(s)	185
TaaI	ACNGT	5 cut(s)	614, 721, 886, 1057, 1188
TaqI	TCGA	2 cut(s)	787, 1042
TaqII	GACCGA	2 cut(s)	503, 614
TasI	AATT	3 cut(s)	5, 867, 1073
TauI	GCSGC	1 cut(s)	587
TfiI	GAWTC	2 cut(s)	148, 179
Tru1I	TTAA	3 cut(s)	51, 260, 1251
Tru9I	TTAA	3 cut(s)	51, 260, 1251
TscAI	CASTG	7 cut(s)	136, 415, 423, 538, 650, 819, 1170
TseFI	GTSAC	2 cut(s)	442, 1159
TseI	GCWGC	1 cut(s)	569
Tsp45I	GTSAC	2 cut(s)	442, 1159
TspDTI	ATGAA	3 cut(s)	140, 264, 495
TspMI	CCCGGG	1 cut(s)	976
TspRI	CASTG	7 cut(s)	136, 415, 423, 538, 650, 819, 1170
VneI	GTGCAC	1 cut(s)	558
VpaK11BI	GGWCC	3 cut(s)	486, 626, 1208
XapI	RAATTY	2 cut(s)	5, 1073
XhoI	CTCGAG	1 cut(s)	786
XmaI	CCCGGG	1 cut(s)	976
XmnI	GAANNNNTTC	1 cut(s)	636
XspI	CTAG	6 cut(s)	402, 549, 848, 945, 1157, 1315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.