Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000898.1

Orthogroup ID

OG0002621

Physical Location & Seq

Genomic Coordinates Reverse (-)

147685 .. 148846

Gene Structure 1162 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000898.1_g000036.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

atgtgtatagcagtgttcatatggcaagaccacccattgtaccctctccttctcttgcaaaacagagatgaataccacaacaggcctacgaagccggtaggatggtgggaaggttgtgagatattaggcgggagagatgaggttgcaggagggacatggctggcttgttcaagaggagggagagttgctttgcttacaaacgtgctcgagcttcatacctcaccggaggcaaagagccggggagacgtgcctgtgcttttcttagagagcttgaagagtccaaaagaatttgcacaagagttggttaaagaggctcaccagtataatggctttaacctgatattggcagatcttcaatccaaaacgatggtttacctctccaacagaccaaaaggagagcctattctcattcaagaggtttctccaggcattcatgtgctttccaatgcaaagcttgactcaccctggcacaaggctcagcgcttgcggctaaattttcagaaagagcttatcaagtatggagaaggtgaaataccagtgaaggaactgatccaaaaactaatgaaggacaaagttaaagctgataaaagcaaattacctcgtatatgtgaactggactgggagtataaactgagctccatatttgttgaagctgacactccactgggacgctatggcaccaggagcagtgctgcaatgtcagtaagacaaaatgggagcctgagtttttatgagagctatcttgataatggcatttggaaggaaaggactgtgaattaccaaattcagaagctgaaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TANGO2

Protein Analysis

266

Amino Acids

30.38

Weight (kDa)

8.73

Isoelectric Point (pI)

36.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002621)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38260
fragaria_vesca	FvH4_2g16710 FvH4_2g16710 FvH4_2g16710 FvH4_5g25460 FvH4_5g25460
malus_domestica	MD05G1135200.v1.1 MD06G1010300.v1.1
prunus_persica	Prupe.8G179100_v2.0.a1
pyrus_communis	pycom05g13180
rosa_chinensis	RchiOBHm_Chr6g0280841 RchiOBHm_Chr7g0215641
rosa_laevigata	RLG00000002635 RLG00000002636 RLG00000013026
rosa_multiflora	Rmu_co8074068.1_g000001 Rmu_sc0000898.1_g000036 Rmu_sc0007602.1_g000001 Rmu_sc0023262.1_g000006 Rmu_ssc0000024.1_g000008
rosa_roxburghii	Rroxscaffold_3G00243960 Rroxscaffold_7G00187580
rosa_rugosa	Rorug06G0134900 Rorug06G0135000 Rorug07G0155800 Rorug07G0155800
rosa_samantha	Rh3CG366900 Rh6AG248300 Rh6BG249800 Rh6BG249900 Rh6CG251000 Rh6DG242600 Rh7AG292500 Rh7BG284800 Rh7CG312400 Rh7DG295700
rosa_wichuraiana	Rw0G020460 Rw4G008690 Rw6G021460 Rw7G024890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	677
AciI	CCGC	2 cut(s)	129, 487
AclWI	GGATC	1 cut(s)	544
AcsI	RAATTY	3 cut(s)	287, 493, 783
AfaI	GTAC	1 cut(s)	41
AfeI	AGCGCT	1 cut(s)	482
AfiI	CCNNNNNNNGG	1 cut(s)	343
AgsI	TTSAA	5 cut(s)	171, 274, 356, 413, 650
AjiI	CACGTC	1 cut(s)	247
AjnI	CCWGG	3 cut(s)	424, 464, 680
AluBI	AGCT	9 cut(s)	211, 270, 454, 508, 581, 636, 653, 738, 793
AluI	AGCT	9 cut(s)	211, 270, 454, 508, 581, 636, 653, 738, 793
Alw21I	GWGCWC	2 cut(s)	207, 638
Alw26I	GTCTC	1 cut(s)	237
AlwI	GGATC	1 cut(s)	544
AlwNI	CAGNNNCTG	1 cut(s)	793
Ama87I	CYCGRG	1 cut(s)	206
Aor51HI	AGCGCT	1 cut(s)	482
AoxI	GGCC	1 cut(s)	83
ApeKI	GCWGC	1 cut(s)	692
ApoI	RAATTY	3 cut(s)	287, 493, 783
AspLEI	GCGC	1 cut(s)	483
AsuC2I	CCSGG	1 cut(s)	239
AsuHPI	GGTGA	4 cut(s)	213, 308, 453, 539
AvaI	CYCGRG	1 cut(s)	206
BanI	GGYRCC	1 cut(s)	677
BanII	GRGCYC	1 cut(s)	638
BarI	GAAGNNNNNNTAC	2 cut(s)	516, 548
Bbv12I	GWGCWC	2 cut(s)	207, 638
BbvI	GCAGC	1 cut(s)	679
BccI	CCATC	2 cut(s)	96, 361
BciT130I	CCWGG	3 cut(s)	426, 466, 682
BcnI	CCSGG	1 cut(s)	239
BcoDI	GTCTC	1 cut(s)	237
BfoI	RGCGCY	1 cut(s)	484
BglII	AGATCT	1 cut(s)	349
BisI	GCNGC	2 cut(s)	488, 693
BlpI	GCTNAGC	1 cut(s)	477
BlsI	GCNGC	2 cut(s)	489, 694
Bme1390I	CCNGG	4 cut(s)	239, 426, 466, 682
BmeT110I	CYCGRG	1 cut(s)	206
BmgBI	CACGTC	1 cut(s)	247
BmiI	GGNNCC	2 cut(s)	679, 719
BmrFI	CCNGG	4 cut(s)	239, 426, 466, 682
BmrI	ACTGGG	2 cut(s)	628, 674
BmuI	ACTGGG	2 cut(s)	628, 674
BpmI	CTGGAG	1 cut(s)	408
Bpu1102I	GCTNAGC	1 cut(s)	477
BpuMI	CCSGG	1 cut(s)	239
BsaJI	CCNNGG	2 cut(s)	238, 464
BsaWI	WCCGGW	1 cut(s)	223
BsaXI	ACNNNNNCTCC	4 cut(s)	168, 198, 709, 739
Bsc4I	CCNNNNNNNGG	1 cut(s)	343
Bse118I	RCCGGY	1 cut(s)	94
Bse1I	ACTGG	5 cut(s)	319, 536, 618, 623, 669
Bse3DI	GCAATG	1 cut(s)	702
BseBI	CCWGG	3 cut(s)	426, 466, 682
BseDI	CCNNGG	2 cut(s)	238, 464
BseGI	GGATG	1 cut(s)	107
BseLI	CCNNNNNNNGG	1 cut(s)	343
BseMI	GCAATG	1 cut(s)	702
BseMII	CTCAG	3 cut(s)	491, 623, 713
BseNI	ACTGG	5 cut(s)	319, 536, 618, 623, 669
BseRI	GAGGAG	1 cut(s)	189
BseXI	GCAGC	1 cut(s)	679
BshFI	GGCC	1 cut(s)	85
BshNI	GGYRCC	1 cut(s)	677
BsiHKAI	GWGCWC	2 cut(s)	207, 638
BsiHKCI	CYCGRG	1 cut(s)	206
BsiSI	CCGG	3 cut(s)	95, 224, 238
BslFI	GGGAC	2 cut(s)	166, 681
BslI	CCNNNNNNNGG	1 cut(s)	343
BsmAI	GTCTC	1 cut(s)	237
BsmBI	CGTCTC	1 cut(s)	237
BsmFI	GGGAC	2 cut(s)	166, 681
BsmI	GAATGC	1 cut(s)	429
BsnI	GGCC	1 cut(s)	85
BsoBI	CYCGRG	1 cut(s)	206
Bsp1286I	GDGCHC	2 cut(s)	207, 638
Bsp143I	GATC	2 cut(s)	349, 549
Bsp1720I	GCTNAGC	1 cut(s)	477
BspACI	CCGC	2 cut(s)	129, 487
BspANI	GGCC	1 cut(s)	85
BspCNI	CTCAG	3 cut(s)	490, 624, 714
BspLI	GGNNCC	2 cut(s)	679, 719
BspPI	GGATC	1 cut(s)	544
BspT107I	GGYRCC	1 cut(s)	677
BsrDI	GCAATG	1 cut(s)	702
BsrFI	RCCGGY	1 cut(s)	94
BsrI	ACTGG	5 cut(s)	319, 536, 618, 623, 669
BssAI	RCCGGY	1 cut(s)	94
BssECI	CCNNGG	2 cut(s)	238, 464
BssMI	GATC	2 cut(s)	349, 549
Bst2UI	CCWGG	3 cut(s)	426, 466, 682
Bst4CI	ACNGT	1 cut(s)	772
Bst6I	CTCTTC	1 cut(s)	269
BstC8I	GCNNGC	2 cut(s)	162, 485
BstDEI	CTNAG	4 cut(s)	262, 477, 632, 722
BstF5I	GGATG	1 cut(s)	107
BstH2I	RGCGCY	1 cut(s)	484
BstHHI	GCGC	1 cut(s)	483
BstKTI	GATC	2 cut(s)	352, 552
BstMAI	GTCTC	1 cut(s)	237
BstMBI	GATC	2 cut(s)	349, 549
BstMWI	GCNNNNNNNGC	3 cut(s)	91, 487, 684
BstNI	CCWGG	3 cut(s)	426, 466, 682
BstSCI	CCNGG	4 cut(s)	237, 424, 464, 680
BstV1I	GCAGC	1 cut(s)	679
BstX2I	RGATCY	1 cut(s)	349
BstXI	CCANNNNNNTGG	2 cut(s)	326, 367
BstYI	RGATCY	1 cut(s)	349
BsuRI	GGCC	1 cut(s)	85
BtrI	CACGTC	1 cut(s)	247
BtsCI	GGATG	1 cut(s)	107
BtsI	GCAGTG	2 cut(s)	18, 694
BtsIMutI	CAGTG	4 cut(s)	18, 543, 662, 694
Cac8I	GCNNGC	2 cut(s)	162, 485
CaiI	CAGNNNCTG	1 cut(s)	793
CfoI	GCGC	1 cut(s)	483
Cfr10I	RCCGGY	1 cut(s)	94
CseI	GACGC	1 cut(s)	678
Csp6I	GTAC	1 cut(s)	40
CviAII	CATG	2 cut(s)	156, 434
CviQI	GTAC	1 cut(s)	40
DdeI	CTNAG	4 cut(s)	262, 477, 632, 722
DpnI	GATC	2 cut(s)	351, 551
DpnII	GATC	2 cut(s)	349, 549
Eam1104I	CTCTTC	1 cut(s)	269
EarI	CTCTTC	1 cut(s)	269
Ecl136II	GAGCTC	1 cut(s)	636
Eco147I	AGGCCT	1 cut(s)	85
Eco24I	GRGCYC	1 cut(s)	638
Eco47III	AGCGCT	1 cut(s)	482
Eco53kI	GAGCTC	1 cut(s)	636
Eco88I	CYCGRG	1 cut(s)	206
EcoICRI	GAGCTC	1 cut(s)	636
EcoRII	CCWGG	3 cut(s)	424, 464, 680
EcoT38I	GRGCYC	1 cut(s)	638
Esp3I	CGTCTC	1 cut(s)	237
FaeI	CATG	2 cut(s)	159, 437
FaqI	GGGAC	2 cut(s)	166, 681
FatI	CATG	2 cut(s)	155, 433
FauI	CCCGC	1 cut(s)	122
FauNDI	CATATG	1 cut(s)	20
Fnu4HI	GCNGC	2 cut(s)	488, 693
FokI	GGATG	1 cut(s)	114
FriOI	GRGCYC	1 cut(s)	638
Fsp4HI	GCNGC	2 cut(s)	488, 693
GlaI	GCGC	1 cut(s)	482
GluI	GCNGC	2 cut(s)	488, 693
GsuI	CTGGAG	1 cut(s)	408
HaeII	RGCGCY	1 cut(s)	484
HaeIII	GGCC	1 cut(s)	85
HapII	CCGG	3 cut(s)	95, 224, 238
HgaI	GACGC	1 cut(s)	678
HhaI	GCGC	1 cut(s)	483
Hin1II	CATG	2 cut(s)	159, 437
Hin6I	GCGC	1 cut(s)	481
HinP1I	GCGC	1 cut(s)	481
HindIII	AAGCTT	1 cut(s)	452
HinfI	GANTC	2 cut(s)	277, 458
HpaII	CCGG	3 cut(s)	95, 224, 238
HphI	GGTGA	4 cut(s)	213, 308, 453, 539
Hpy166II	GTNNAC	2 cut(s)	373, 611
Hpy188I	TCNGA	2 cut(s)	501, 789
Hpy188III	TCNNGA	3 cut(s)	171, 413, 743
Hpy8I	GTNNAC	2 cut(s)	373, 611
HpyAV	CCTTC	6 cut(s)	59, 104, 518, 535, 559, 754
HpyCH4III	ACNGT	1 cut(s)	772
HpyCH4IV	ACGT	2 cut(s)	201, 246
HpyCH4V	TGCA	5 cut(s)	58, 146, 293, 449, 695
HpyF10VI	GCNNNNNNNGC	3 cut(s)	91, 487, 684
HpyF3I	CTNAG	4 cut(s)	262, 477, 632, 722
HpySE526I	ACGT	2 cut(s)	201, 246
Hsp92II	CATG	2 cut(s)	159, 437
HspAI	GCGC	1 cut(s)	481
Kzo9I	GATC	2 cut(s)	349, 549
LmnI	GCTCC	3 cut(s)	641, 684, 717
Lsp1109I	GCAGC	1 cut(s)	679
MaeII	ACGT	2 cut(s)	201, 246
MalI	GATC	2 cut(s)	351, 551
MboI	GATC	2 cut(s)	349, 549
MboII	GAAGA	2 cut(s)	286, 344
MflI	RGATCY	1 cut(s)	349
MhlI	GDGCHC	2 cut(s)	207, 638
MluCI	AATT	5 cut(s)	287, 493, 593, 775, 783
MlyI	GAGTC	2 cut(s)	286, 452
MmeI	TCCRAC	1 cut(s)	405
MseI	TTAA	3 cut(s)	306, 333, 576
MslI	CAYNNNNRTG	1 cut(s)	434
MspI	CCGG	3 cut(s)	95, 224, 238
MspR9I	CCNGG	4 cut(s)	239, 426, 466, 682
Mva1269I	GAATGC	1 cut(s)	429
MvaI	CCWGG	3 cut(s)	426, 466, 682
MwoI	GCNNNNNNNGC	3 cut(s)	91, 487, 684
NciI	CCSGG	1 cut(s)	239
NdeI	CATATG	1 cut(s)	20
NdeII	GATC	2 cut(s)	349, 549
NlaIII	CATG	2 cut(s)	159, 437
NlaIV	GGNNCC	2 cut(s)	679, 719
PaeR7I	CTCGAG	1 cut(s)	206
PceI	AGGCCT	1 cut(s)	85
PctI	GAATGC	1 cut(s)	429
PkrI	GCNGC	2 cut(s)	489, 694
PleI	GAGTC	2 cut(s)	285, 452
PpsI	GAGTC	2 cut(s)	285, 452
Psp124BI	GAGCTC	1 cut(s)	638
Psp6I	CCWGG	3 cut(s)	424, 464, 680
PspGI	CCWGG	3 cut(s)	424, 464, 680
PspN4I	GGNNCC	2 cut(s)	679, 719
PspXI	VCTCGAGB	1 cut(s)	206
PstNI	CAGNNNCTG	1 cut(s)	793
PsuI	RGATCY	1 cut(s)	349
RsaI	GTAC	1 cut(s)	41
RsaNI	GTAC	1 cut(s)	40
RseI	CAYNNNNRTG	1 cut(s)	434
SacI	GAGCTC	1 cut(s)	638
SaqAI	TTAA	3 cut(s)	306, 333, 576
SatI	GCNGC	2 cut(s)	488, 693
Sau3AI	GATC	2 cut(s)	349, 549
SchI	GAGTC	2 cut(s)	286, 452
ScrFI	CCNGG	4 cut(s)	239, 426, 466, 682
SduI	GDGCHC	2 cut(s)	207, 638
Sfr274I	CTCGAG	1 cut(s)	206
SlaI	CTCGAG	1 cut(s)	206
SmiMI	CAYNNNNRTG	1 cut(s)	434
SmlI	CTYRAG	1 cut(s)	206
SmoI	CTYRAG	1 cut(s)	206
Sse9I	AATT	5 cut(s)	287, 493, 593, 775, 783
SseBI	AGGCCT	1 cut(s)	85
SsiI	CCGC	2 cut(s)	129, 487
SstI	GAGCTC	1 cut(s)	638
StuI	AGGCCT	1 cut(s)	85
StyD4I	CCNGG	4 cut(s)	237, 424, 464, 680
TaaI	ACNGT	1 cut(s)	772
TaiI	ACGT	2 cut(s)	204, 249
TaqI	TCGA	1 cut(s)	207
TasI	AATT	5 cut(s)	287, 493, 593, 775, 783
TauI	GCSGC	1 cut(s)	490
Tru1I	TTAA	3 cut(s)	306, 333, 576
Tru9I	TTAA	3 cut(s)	306, 333, 576
TscAI	CASTG	4 cut(s)	18, 543, 669, 694
TseI	GCWGC	1 cut(s)	692
TspDTI	ATGAA	5 cut(s)	7, 84, 203, 422, 578
TspRI	CASTG	4 cut(s)	18, 543, 669, 694
XapI	RAATTY	3 cut(s)	287, 493, 783
XhoI	CTCGAG	1 cut(s)	206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.