FvH4_5g25460

Transport and Golgi organization 2 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0002621
Physical Location & Seq
Reverse (-)
16941502 .. 16943428
1927 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g25460.t1

Sequence Viewer

Length: 801 bp
ATGTGTATAGCAGTGTTCATATGGCAAGATCACCCATTGTACCCTCTCCTTCTCTTGGCAAACAGAGATGAATACCACAACAGGCCTACGAAACCTGTGGAATGGTGGGAAGGTTGTAAGATACTAGGGGGGAGAGATGAGGTTGCAGGAGGGACATGGCTGGCTTGTTCAAGAGGAGGGAGAGTTGCTTTGCTCACAAACGTTCTCGAGGTTCAAACCCTACCGGAGGCAAAAACCCGGGGAGACTTGCCTGTGCTTTTCTTAAAGAGCTTGAAGAGTCCAAAAGAATTTGCACAAGAGTTGGTTAAAGAGGCTCACCAGTATAATGGGTTTAACCTTATATTGGCTGATCTTCAATCCAAAACCATGGTTTACCTCTCCAATAGACCAAAAGGAGAGCCTATTCTCGTTCAACAGGTTTCTCCAGGCATTCATGTGCTTTCCAATGCAAAGCTTGACTCACCCTGGCACAAGGCTCAGCGTTTGCGGCTAAATTTTCAGAAAGAGCTCATCAAGTATGGAGAAGATGAAATACCAGTGAGGGAACTGATCGAAAAACTCATGAAGGACAAAGTAAAAGCTGATAAAAGCAAATTACCTTGTATATGCAAACTCGATTGGGAGTATAAACTGAGCTCCATATTTGTTGAAGTTGACACTCCACTGGGACGGTATGGCACCAGGAGCAGTGCTGCAGTGTCGGTAAGACAAAATGGGAATCTGAGTTTTCATGAGAGCTATCTTGAAAATGACAAGTGGAAGGAAAGGACTGTGAATTACAAAATTGAGAAGCTGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TANGO2

Protein Analysis

267

Amino Acids

30.53

Weight (kDa)

9.03

Isoelectric Point (pI)

32.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TANGO2 PF05742 1 - 249 1.9e-73 Transport and Golgi organisation 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 677
AciI CCGC 1 cut(s) 487
AclI AACGTT 1 cut(s) 201
AcsI RAATTY 2 cut(s) 287, 493
AfaI GTAC 1 cut(s) 41
AfiI CCNNNNNNNGG 3 cut(s) 55, 226, 343
AgsI TTSAA 7 cut(s) 171, 215, 274, 356, 413, 650, 746
AjnI CCWGG 3 cut(s) 424, 464, 680
AluBI AGCT 7 cut(s) 270, 454, 508, 581, 636, 738, 793
AluI AGCT 7 cut(s) 270, 454, 508, 581, 636, 738, 793
Alw21I GWGCWC 2 cut(s) 510, 638
Alw26I GTCTC 1 cut(s) 237
Ama87I CYCGRG 2 cut(s) 206, 237
AoxI GGCC 1 cut(s) 83
ApeKI GCWGC 1 cut(s) 692
ApoI RAATTY 2 cut(s) 287, 493
AsuC2I CCSGG 2 cut(s) 238, 239
AsuHPI GGTGA 3 cut(s) 23, 308, 453
AvaI CYCGRG 2 cut(s) 206, 237
BanI GGYRCC 1 cut(s) 677
BanII GRGCYC 2 cut(s) 510, 638
BarI GAAGNNNNNNTAC 2 cut(s) 516, 548
Bbv12I GWGCWC 2 cut(s) 510, 638
BbvI GCAGC 1 cut(s) 679
BciT130I CCWGG 3 cut(s) 426, 466, 682
BcnI CCSGG 2 cut(s) 238, 239
BcoDI GTCTC 1 cut(s) 237
BfaI CTAG 1 cut(s) 125
BfmI CTRYAG 1 cut(s) 693
BisI GCNGC 2 cut(s) 488, 693
BlpI GCTNAGC 1 cut(s) 477
BlsI GCNGC 2 cut(s) 489, 694
Bme1390I CCNGG 5 cut(s) 238, 239, 426, 466, 682
BmeT110I CYCGRG 2 cut(s) 206, 237
BmiI GGNNCC 1 cut(s) 679
BmrFI CCNGG 5 cut(s) 238, 239, 426, 466, 682
BmrI ACTGGG 1 cut(s) 674
BmuI ACTGGG 1 cut(s) 674
BpmI CTGGAG 1 cut(s) 408
Bpu1102I GCTNAGC 1 cut(s) 477
BpuMI CCSGG 2 cut(s) 238, 239
BsaJI CCNNGG 4 cut(s) 237, 238, 366, 464
BsaWI WCCGGW 1 cut(s) 223
BsaXI ACNNNNNCTCC 2 cut(s) 168, 198
Bsc4I CCNNNNNNNGG 3 cut(s) 55, 226, 343
Bse1I ACTGG 3 cut(s) 319, 536, 669
BseBI CCWGG 3 cut(s) 426, 466, 682
BseDI CCNNGG 4 cut(s) 237, 238, 366, 464
BseLI CCNNNNNNNGG 3 cut(s) 55, 226, 343
BseMII CTCAG 3 cut(s) 491, 623, 713
BseNI ACTGG 3 cut(s) 319, 536, 669
BseRI GAGGAG 1 cut(s) 189
BseXI GCAGC 1 cut(s) 679
BshFI GGCC 1 cut(s) 85
BshNI GGYRCC 1 cut(s) 677
BsiHKAI GWGCWC 2 cut(s) 510, 638
BsiHKCI CYCGRG 2 cut(s) 206, 237
BsiSI CCGG 2 cut(s) 224, 238
BslFI GGGAC 2 cut(s) 166, 681
BslI CCNNNNNNNGG 3 cut(s) 55, 226, 343
BsmAI GTCTC 1 cut(s) 237
BsmFI GGGAC 2 cut(s) 166, 681
BsmI GAATGC 1 cut(s) 429
BsnI GGCC 1 cut(s) 85
BsoBI CYCGRG 2 cut(s) 206, 237
Bsp1286I GDGCHC 2 cut(s) 510, 638
Bsp143I GATC 3 cut(s) 28, 349, 549
Bsp1720I GCTNAGC 1 cut(s) 477
Bsp19I CCATGG 1 cut(s) 366
BspACI CCGC 1 cut(s) 487
BspANI GGCC 1 cut(s) 85
BspCNI CTCAG 3 cut(s) 490, 624, 714
BspHI TCATGA 2 cut(s) 561, 730
BspLI GGNNCC 1 cut(s) 679
BspMAI CTGCAG 1 cut(s) 697
BspT107I GGYRCC 1 cut(s) 677
BsrI ACTGG 3 cut(s) 319, 536, 669
BssECI CCNNGG 4 cut(s) 237, 238, 366, 464
BssMI GATC 3 cut(s) 28, 349, 549
BssT1I CCWWGG 1 cut(s) 366
Bst2UI CCWGG 3 cut(s) 426, 466, 682
Bst4CI ACNGT 2 cut(s) 672, 772
Bst6I CTCTTC 1 cut(s) 269
BstC8I GCNNGC 1 cut(s) 162
BstDEI CTNAG 3 cut(s) 477, 632, 722
BstDSI CCRYGG 1 cut(s) 366
BstENI CCTNNNNNAGG 1 cut(s) 224
BstKTI GATC 3 cut(s) 31, 352, 552
BstMAI GTCTC 1 cut(s) 237
BstMBI GATC 3 cut(s) 28, 349, 549
BstMWI GCNNNNNNNGC 2 cut(s) 487, 684
BstNI CCWGG 3 cut(s) 426, 466, 682
BstSCI CCNGG 5 cut(s) 236, 237, 424, 464, 680
BstSFI CTRYAG 1 cut(s) 693
BstV1I GCAGC 1 cut(s) 679
BstXI CCANNNNNNTGG 2 cut(s) 326, 367
BsuRI GGCC 1 cut(s) 85
BtgI CCRYGG 1 cut(s) 366
BtsI GCAGTG 3 cut(s) 18, 694, 702
BtsIMutI CAGTG 5 cut(s) 18, 543, 662, 694, 702
Cac8I GCNNGC 1 cut(s) 162
CciI TCATGA 2 cut(s) 561, 730
Cfr9I CCCGGG 1 cut(s) 237
Csp6I GTAC 1 cut(s) 40
CviAII CATG 5 cut(s) 156, 367, 434, 562, 731
CviQI GTAC 1 cut(s) 40
DdeI CTNAG 3 cut(s) 477, 632, 722
DpnI GATC 3 cut(s) 30, 351, 551
DpnII GATC 3 cut(s) 28, 349, 549
Eam1104I CTCTTC 1 cut(s) 269
EarI CTCTTC 1 cut(s) 269
Ecl136II GAGCTC 2 cut(s) 508, 636
Eco130I CCWWGG 1 cut(s) 366
Eco147I AGGCCT 1 cut(s) 85
Eco24I GRGCYC 2 cut(s) 510, 638
Eco53kI GAGCTC 2 cut(s) 508, 636
Eco88I CYCGRG 2 cut(s) 206, 237
EcoICRI GAGCTC 2 cut(s) 508, 636
EcoNI CCTNNNNNAGG 1 cut(s) 224
EcoRII CCWGG 3 cut(s) 424, 464, 680
EcoT14I CCWWGG 1 cut(s) 366
EcoT38I GRGCYC 2 cut(s) 510, 638
ErhI CCWWGG 1 cut(s) 366
FaeI CATG 5 cut(s) 159, 370, 437, 565, 734
FaqI GGGAC 2 cut(s) 166, 681
FatI CATG 5 cut(s) 155, 366, 433, 561, 730
FauNDI CATATG 1 cut(s) 20
Fnu4HI GCNGC 2 cut(s) 488, 693
FriOI GRGCYC 2 cut(s) 510, 638
Fsp4HI GCNGC 2 cut(s) 488, 693
FspBI CTAG 1 cut(s) 125
GluI GCNGC 2 cut(s) 488, 693
GsuI CTGGAG 1 cut(s) 408
HaeIII GGCC 1 cut(s) 85
HapII CCGG 2 cut(s) 224, 238
Hin1II CATG 5 cut(s) 159, 370, 437, 565, 734
HincII GTYRAC 1 cut(s) 655
HindII GTYRAC 1 cut(s) 655
HindIII AAGCTT 1 cut(s) 452
HinfI GANTC 3 cut(s) 277, 458, 718
HpaII CCGG 2 cut(s) 224, 238
HphI GGTGA 3 cut(s) 23, 308, 453
Hpy166II GTNNAC 2 cut(s) 373, 655
Hpy188I TCNGA 2 cut(s) 501, 723
Hpy188III TCNNGA 5 cut(s) 171, 206, 562, 731, 743
Hpy8I GTNNAC 2 cut(s) 373, 655
HpyAV CCTTC 4 cut(s) 59, 104, 559, 754
HpyCH4III ACNGT 2 cut(s) 672, 772
HpyCH4IV ACGT 1 cut(s) 201
HpyCH4V TGCA 5 cut(s) 146, 293, 449, 609, 695
HpyF10VI GCNNNNNNNGC 2 cut(s) 487, 684
HpyF3I CTNAG 3 cut(s) 477, 632, 722
HpySE526I ACGT 1 cut(s) 201
Hsp92II CATG 5 cut(s) 159, 370, 437, 565, 734
Kzo9I GATC 3 cut(s) 28, 349, 549
LmnI GCTCC 2 cut(s) 641, 684
Lsp1109I GCAGC 1 cut(s) 679
MaeI CTAG 1 cut(s) 125
MaeII ACGT 1 cut(s) 201
MalI GATC 3 cut(s) 30, 351, 551
MboI GATC 3 cut(s) 28, 349, 549
MboII GAAGA 3 cut(s) 286, 344, 536
MhlI GDGCHC 2 cut(s) 510, 638
MluCI AATT 5 cut(s) 287, 493, 593, 775, 783
MlyI GAGTC 2 cut(s) 286, 452
MseI TTAA 3 cut(s) 263, 306, 333
MslI CAYNNNNRTG 1 cut(s) 434
MspI CCGG 2 cut(s) 224, 238
MspR9I CCNGG 5 cut(s) 238, 239, 426, 466, 682
Mva1269I GAATGC 1 cut(s) 429
MvaI CCWGG 3 cut(s) 426, 466, 682
MwoI GCNNNNNNNGC 2 cut(s) 487, 684
NciI CCSGG 2 cut(s) 238, 239
NcoI CCATGG 1 cut(s) 366
NdeI CATATG 1 cut(s) 20
NdeII GATC 3 cut(s) 28, 349, 549
NlaIII CATG 5 cut(s) 159, 370, 437, 565, 734
NlaIV GGNNCC 1 cut(s) 679
PaeR7I CTCGAG 1 cut(s) 206
PagI TCATGA 2 cut(s) 561, 730
PceI AGGCCT 1 cut(s) 85
PctI GAATGC 1 cut(s) 429
PfeI GAWTC 1 cut(s) 718
PkrI GCNGC 2 cut(s) 489, 694
PleI GAGTC 2 cut(s) 285, 452
PpsI GAGTC 2 cut(s) 285, 452
Psp124BI GAGCTC 2 cut(s) 510, 638
Psp1406I AACGTT 1 cut(s) 201
Psp6I CCWGG 3 cut(s) 424, 464, 680
PspGI CCWGG 3 cut(s) 424, 464, 680
PspN4I GGNNCC 1 cut(s) 679
PstI CTGCAG 1 cut(s) 697
RsaI GTAC 1 cut(s) 41
RsaNI GTAC 1 cut(s) 40
RseI CAYNNNNRTG 1 cut(s) 434
SacI GAGCTC 2 cut(s) 510, 638
SaqAI TTAA 3 cut(s) 263, 306, 333
SatI GCNGC 2 cut(s) 488, 693
Sau3AI GATC 3 cut(s) 28, 349, 549
SchI GAGTC 2 cut(s) 286, 452
ScrFI CCNGG 5 cut(s) 238, 239, 426, 466, 682
SduI GDGCHC 2 cut(s) 510, 638
SfcI CTRYAG 1 cut(s) 693
Sfr274I CTCGAG 1 cut(s) 206
SlaI CTCGAG 1 cut(s) 206
SmaI CCCGGG 1 cut(s) 239
SmiMI CAYNNNNRTG 1 cut(s) 434
SmlI CTYRAG 1 cut(s) 206
SmoI CTYRAG 1 cut(s) 206
Sse9I AATT 5 cut(s) 287, 493, 593, 775, 783
SseBI AGGCCT 1 cut(s) 85
SsiI CCGC 1 cut(s) 487
SspMI CTAG 1 cut(s) 125
SstI GAGCTC 2 cut(s) 510, 638
StuI AGGCCT 1 cut(s) 85
StyD4I CCNGG 5 cut(s) 236, 237, 424, 464, 680
StyI CCWWGG 1 cut(s) 366
TaaI ACNGT 2 cut(s) 672, 772
TaiI ACGT 1 cut(s) 204
TaqI TCGA 3 cut(s) 207, 552, 615
TasI AATT 5 cut(s) 287, 493, 593, 775, 783
TauI GCSGC 1 cut(s) 490
TfiI GAWTC 1 cut(s) 718
Tru1I TTAA 3 cut(s) 263, 306, 333
Tru9I TTAA 3 cut(s) 263, 306, 333
TscAI CASTG 5 cut(s) 18, 543, 669, 694, 702
TseI GCWGC 1 cut(s) 692
TspDTI ATGAA 6 cut(s) 7, 84, 422, 543, 578, 719
TspMI CCCGGG 1 cut(s) 237
TspRI CASTG 5 cut(s) 18, 543, 669, 694, 702
XagI CCTNNNNNAGG 1 cut(s) 224
XapI RAATTY 2 cut(s) 287, 493
XhoI CTCGAG 1 cut(s) 206
XmaI CCCGGG 1 cut(s) 237
XspI CTAG 1 cut(s) 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.