Rw4G008690

Transport and Golgi organisation 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0002621
Physical Location & Seq
Reverse (-)
19071466 .. 19072240
775 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G008690.1

Sequence Viewer

Length: 522 bp
ATGGAATTTGCGGAGGAAGTTGTTGAGGAGGCAGATAAATACAATGGGTTTAACCTGATATTGGCTGATCTTTGTTCTAAGACCATGCTTTATGTAACCAACAGACCAAAGGAGGAAAAAAAGTTTATCACTGAGGTTTCACCGGGGATTCATGTATTGACAAATGATGCAATGCTTGATTCTCCTTGGCCTAAGTCTCAACGACTTAGCAATAGTTTCAAAGAGATGCTCAACAAGTATGGAGATGATGAAGTTTCGTTAAAGGAAATGGCTCTACGACTAATGACAGACGAGACCAGAGACGACAAAAGCCTGCTACCTTGCATTTATTCTCCAGAAGTAGAATACGAACTAAGTTCCATATATATTGAATATGCCCCTGCATTGGGGTATTGTGGTACTAGAAGCACTGAAGCAGTGTCTGTAAATACAATTGGGGAAGTCACCTTTTATGAGAGATTTATAGCTGGGGATTGGCATGAAAGGACCGAGACCTTCCAGATTGAAGAGGAGAGTAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TANGO2

Protein Analysis

173

Amino Acids

19.93

Weight (kDa)

4.5

Isoelectric Point (pI)

47.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TANGO2 PF05742 2 - 154 4.6e-29 Transport and Golgi organisation 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 11
AcsI RAATTY 1 cut(s) 5
AcuI CTGAAG 1 cut(s) 432
AfaI GTAC 1 cut(s) 400
AfiI CCNNNNNNNGG 3 cut(s) 61, 385, 386
AgsI TTSAA 3 cut(s) 220, 371, 506
AluBI AGCT 1 cut(s) 467
AluI AGCT 1 cut(s) 467
Alw26I GTCTC 4 cut(s) 201, 287, 294, 485
AlwNI CAGNNNCTG 1 cut(s) 422
AoxI GGCC 1 cut(s) 188
ApoI RAATTY 1 cut(s) 5
AspS9I GGNCC 1 cut(s) 486
AsuC2I CCSGG 1 cut(s) 144
AsuHPI GGTGA 2 cut(s) 132, 436
AvaII GGWCC 1 cut(s) 486
BcnI CCSGG 1 cut(s) 144
BcoDI GTCTC 4 cut(s) 201, 287, 294, 485
BfaI CTAG 1 cut(s) 402
Bme1390I CCNGG 1 cut(s) 144
Bme18I GGWCC 1 cut(s) 486
BmgT120I GGNCC 1 cut(s) 486
BmrFI CCNGG 1 cut(s) 144
BmsI GCATC 2 cut(s) 157, 216
BpmI CTGGAG 1 cut(s) 318
BpuMI CCSGG 1 cut(s) 144
BsaI GGTCTC 2 cut(s) 287, 485
BsaJI CCNNGG 2 cut(s) 143, 185
Bsc4I CCNNNNNNNGG 3 cut(s) 61, 385, 386
Bse3DI GCAATG 1 cut(s) 177
BseDI CCNNGG 2 cut(s) 143, 185
BseLI CCNNNNNNNGG 3 cut(s) 61, 385, 386
BseMI GCAATG 1 cut(s) 177
BseMII CTCAG 1 cut(s) 123
BseRI GAGGAG 1 cut(s) 41
BseYI CCCAGC 1 cut(s) 467
BshFI GGCC 1 cut(s) 190
BsiSI CCGG 1 cut(s) 143
BslI CCNNNNNNNGG 3 cut(s) 61, 385, 386
BsmAI GTCTC 4 cut(s) 201, 287, 294, 485
BsmBI CGTCTC 1 cut(s) 294
BsnI GGCC 1 cut(s) 190
Bso31I GGTCTC 2 cut(s) 287, 485
Bsp143I GATC 1 cut(s) 67
BspACI CCGC 1 cut(s) 11
BspANI GGCC 1 cut(s) 190
BspCNI CTCAG 1 cut(s) 124
BspTNI GGTCTC 2 cut(s) 287, 485
BsrDI GCAATG 1 cut(s) 177
BssECI CCNNGG 2 cut(s) 143, 185
BssMI GATC 1 cut(s) 67
BssT1I CCWWGG 1 cut(s) 185
Bst6I CTCTTC 1 cut(s) 501
BstC8I GCNNGC 1 cut(s) 314
BstDEI CTNAG 5 cut(s) 78, 132, 192, 206, 353
BstKTI GATC 1 cut(s) 70
BstMAI GTCTC 4 cut(s) 201, 287, 294, 485
BstMBI GATC 1 cut(s) 67
BstSCI CCNGG 1 cut(s) 142
BsuRI GGCC 1 cut(s) 190
BtsI GCAGTG 1 cut(s) 423
BtsIMutI CAGTG 3 cut(s) 129, 408, 423
Cac8I GCNNGC 1 cut(s) 314
CaiI CAGNNNCTG 1 cut(s) 422
Cfr13I GGNCC 1 cut(s) 486
Csp6I GTAC 1 cut(s) 399
CviAII CATG 3 cut(s) 85, 152, 479
CviJI RGCY 5 cut(s) 65, 190, 272, 312, 467
CviKI_1 RGCY 5 cut(s) 65, 190, 272, 312, 467
CviQI GTAC 1 cut(s) 399
DdeI CTNAG 5 cut(s) 78, 132, 192, 206, 353
DpnI GATC 1 cut(s) 69
DpnII GATC 1 cut(s) 67
Eam1104I CTCTTC 1 cut(s) 501
EarI CTCTTC 1 cut(s) 501
Eco130I CCWWGG 1 cut(s) 185
Eco31I GGTCTC 2 cut(s) 287, 485
Eco47I GGWCC 1 cut(s) 486
Eco57I CTGAAG 1 cut(s) 432
EcoT14I CCWWGG 1 cut(s) 185
ErhI CCWWGG 1 cut(s) 185
Esp3I CGTCTC 1 cut(s) 294
FaeI CATG 3 cut(s) 88, 155, 482
FatI CATG 3 cut(s) 84, 151, 478
FspBI CTAG 1 cut(s) 402
GsaI CCCAGC 1 cut(s) 471
GsuI CTGGAG 1 cut(s) 318
HaeIII GGCC 1 cut(s) 190
HapII CCGG 1 cut(s) 143
Hin1II CATG 3 cut(s) 88, 155, 482
HinfI GANTC 2 cut(s) 148, 179
HpaII CCGG 1 cut(s) 143
HphI GGTGA 2 cut(s) 132, 436
Hpy188III TCNNGA 2 cut(s) 335, 499
HpyAV CCTTC 1 cut(s) 505
HpyCH4V TGCA 3 cut(s) 170, 324, 383
HpyF3I CTNAG 5 cut(s) 78, 132, 192, 206, 353
Hsp92II CATG 3 cut(s) 88, 155, 482
Kzo9I GATC 1 cut(s) 67
LpnPI CCDG 8 cut(s) 68, 156, 310, 326, 348, 393, 453, 512
LweI GCATC 2 cut(s) 157, 216
MaeI CTAG 1 cut(s) 402
MaeIII GTNAC 2 cut(s) 94, 442
MalI GATC 1 cut(s) 69
MboI GATC 1 cut(s) 67
MboII GAAGA 1 cut(s) 518
MfeI CAATTG 1 cut(s) 432
MluCI AATT 2 cut(s) 5, 432
MnlI CCTC 6 cut(s) 7, 19, 22, 106, 127, 502
MseI TTAA 2 cut(s) 51, 260
MspI CCGG 1 cut(s) 143
MspR9I CCNGG 1 cut(s) 144
MunI CAATTG 1 cut(s) 432
NciI CCSGG 1 cut(s) 144
NdeII GATC 1 cut(s) 67
NlaIII CATG 3 cut(s) 88, 155, 482
NmuCI GTSAC 1 cut(s) 442
PfeI GAWTC 2 cut(s) 148, 179
PspFI CCCAGC 1 cut(s) 467
PspPI GGNCC 1 cut(s) 486
PstNI CAGNNNCTG 1 cut(s) 422
RsaI GTAC 1 cut(s) 400
RsaNI GTAC 1 cut(s) 399
SaqAI TTAA 2 cut(s) 51, 260
Sau3AI GATC 1 cut(s) 67
Sau96I GGNCC 1 cut(s) 486
ScrFI CCNGG 1 cut(s) 144
SetI ASST 6 cut(s) 57, 138, 322, 449, 469, 497
SfaNI GCATC 2 cut(s) 157, 216
SinI GGWCC 1 cut(s) 486
Sse9I AATT 2 cut(s) 5, 432
SsiI CCGC 1 cut(s) 11
SspMI CTAG 1 cut(s) 402
StyD4I CCNGG 1 cut(s) 142
StyI CCWWGG 1 cut(s) 185
TaqII GACCGA 1 cut(s) 503
TasI AATT 2 cut(s) 5, 432
TfiI GAWTC 2 cut(s) 148, 179
Tru1I TTAA 2 cut(s) 51, 260
Tru9I TTAA 2 cut(s) 51, 260
TscAI CASTG 3 cut(s) 136, 415, 423
TseFI GTSAC 1 cut(s) 442
Tsp45I GTSAC 1 cut(s) 442
TspDTI ATGAA 3 cut(s) 140, 264, 495
TspRI CASTG 3 cut(s) 136, 415, 423
VpaK11BI GGWCC 1 cut(s) 486
XapI RAATTY 1 cut(s) 5
XspI CTAG 1 cut(s) 402
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.