Rh6AG248300

Transport and Golgi organisation 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0002621
Physical Location & Seq
Forward (+)
43798116 .. 43800341
2226 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG248300.1

Sequence Viewer

Length: 573 bp
ATGGTTATCACTCATCACAAGTTTCTATTGTTGCAGGGCAAAAAGAGTCCGATGGAATTTGCAGAGGAAGTTGTTGAGGAGGCAGATAAGTACAATGGTTTTAACCTGATATTGGCTGATCTTCGTTCTAAGACCATGCTTTATGTAACCAACAGACCAAAGGAGGAAAAAAAGTTTATCACTGAGGTTTCACCGGGGATTCATGTATTGACAAATGATGCAATGCTTGATTCTCCTTGGCTTAAGTCTCAACGACTTAGCAATAGTTTCAAAGAGATGCTCAACAAGTATGGAGATGATGAAGTTTCGTTAAAGGAAATGGCTCTACGACTAATGACAGACGAGACCAGAGACGACAAAAGCCTGCTACCTTGCATTTATTCTCCAGAAGTAGAATACGAACTAAGTTCCATATATATTGAATATGCCCCTGCATTGGGGTATTATGGTACTAGAAGCACTGAAGCAGTGTCTGTCAATACAAATGGGGAAGTCACCTTTTATGAGAGATTTATAGCTGGGGATTGGCATGAAAGGACCGAGACCTTCCAGATTGAAGAGGAGAGTAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TANGO2

Protein Analysis

190

Amino Acids

22.02

Weight (kDa)

4.85

Isoelectric Point (pI)

50.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TANGO2 PF05742 9 - 171 5.3e-33 Transport and Golgi organisation 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 56
AcuI CTGAAG 1 cut(s) 483
AfaI GTAC 2 cut(s) 92, 451
AfiI CCNNNNNNNGG 3 cut(s) 112, 436, 437
AflII CTTAAG 1 cut(s) 242
AgsI TTSAA 3 cut(s) 271, 422, 557
AluBI AGCT 1 cut(s) 518
AluI AGCT 1 cut(s) 518
Alw26I GTCTC 4 cut(s) 252, 338, 345, 536
AlwNI CAGNNNCTG 1 cut(s) 473
ApoI RAATTY 1 cut(s) 56
AspS9I GGNCC 1 cut(s) 537
AsuC2I CCSGG 1 cut(s) 195
AsuHPI GGTGA 2 cut(s) 183, 487
AvaII GGWCC 1 cut(s) 537
BccI CCATC 1 cut(s) 46
BcnI CCSGG 1 cut(s) 195
BcoDI GTCTC 4 cut(s) 252, 338, 345, 536
BfaI CTAG 1 cut(s) 453
BfrI CTTAAG 1 cut(s) 242
Bme1390I CCNGG 1 cut(s) 195
Bme18I GGWCC 1 cut(s) 537
BmgT120I GGNCC 1 cut(s) 537
BmrFI CCNGG 1 cut(s) 195
BmsI GCATC 2 cut(s) 208, 267
BpmI CTGGAG 1 cut(s) 369
BpuMI CCSGG 1 cut(s) 195
BsaI GGTCTC 2 cut(s) 338, 536
BsaJI CCNNGG 2 cut(s) 194, 236
Bsc4I CCNNNNNNNGG 3 cut(s) 112, 436, 437
Bse3DI GCAATG 1 cut(s) 228
BseDI CCNNGG 2 cut(s) 194, 236
BseLI CCNNNNNNNGG 3 cut(s) 112, 436, 437
BseMI GCAATG 1 cut(s) 228
BseMII CTCAG 1 cut(s) 174
BseRI GAGGAG 1 cut(s) 92
BseYI CCCAGC 1 cut(s) 518
BsiSI CCGG 1 cut(s) 194
BslI CCNNNNNNNGG 3 cut(s) 112, 436, 437
BsmAI GTCTC 4 cut(s) 252, 338, 345, 536
BsmBI CGTCTC 1 cut(s) 345
Bso31I GGTCTC 2 cut(s) 338, 536
Bsp143I GATC 1 cut(s) 118
BspCNI CTCAG 1 cut(s) 175
BspTI CTTAAG 1 cut(s) 242
BspTNI GGTCTC 2 cut(s) 338, 536
BsrDI GCAATG 1 cut(s) 228
BssECI CCNNGG 2 cut(s) 194, 236
BssMI GATC 1 cut(s) 118
BssT1I CCWWGG 1 cut(s) 236
Bst6I CTCTTC 1 cut(s) 552
BstAFI CTTAAG 1 cut(s) 242
BstC8I GCNNGC 1 cut(s) 365
BstDEI CTNAG 4 cut(s) 129, 183, 257, 404
BstKTI GATC 1 cut(s) 121
BstMAI GTCTC 4 cut(s) 252, 338, 345, 536
BstMBI GATC 1 cut(s) 118
BstSCI CCNGG 1 cut(s) 193
BtsI GCAGTG 1 cut(s) 474
BtsIMutI CAGTG 3 cut(s) 180, 459, 474
Cac8I GCNNGC 1 cut(s) 365
CaiI CAGNNNCTG 1 cut(s) 473
Cfr13I GGNCC 1 cut(s) 537
Csp6I GTAC 2 cut(s) 91, 450
CviAII CATG 3 cut(s) 136, 203, 530
CviJI RGCY 5 cut(s) 116, 241, 323, 363, 518
CviKI_1 RGCY 5 cut(s) 116, 241, 323, 363, 518
CviQI GTAC 2 cut(s) 91, 450
DdeI CTNAG 4 cut(s) 129, 183, 257, 404
DpnI GATC 1 cut(s) 120
DpnII GATC 1 cut(s) 118
Eam1104I CTCTTC 1 cut(s) 552
EarI CTCTTC 1 cut(s) 552
Eco130I CCWWGG 1 cut(s) 236
Eco31I GGTCTC 2 cut(s) 338, 536
Eco47I GGWCC 1 cut(s) 537
Eco57I CTGAAG 1 cut(s) 483
EcoT14I CCWWGG 1 cut(s) 236
ErhI CCWWGG 1 cut(s) 236
Esp3I CGTCTC 1 cut(s) 345
FaeI CATG 3 cut(s) 139, 206, 533
FatI CATG 3 cut(s) 135, 202, 529
FspBI CTAG 1 cut(s) 453
GsaI CCCAGC 1 cut(s) 522
GsuI CTGGAG 1 cut(s) 369
HapII CCGG 1 cut(s) 194
Hin1II CATG 3 cut(s) 139, 206, 533
HinfI GANTC 3 cut(s) 46, 199, 230
HpaII CCGG 1 cut(s) 194
HphI GGTGA 2 cut(s) 183, 487
Hpy188I TCNGA 1 cut(s) 51
Hpy188III TCNNGA 2 cut(s) 386, 550
HpyAV CCTTC 1 cut(s) 556
HpyCH4V TGCA 5 cut(s) 34, 62, 221, 375, 434
HpyF3I CTNAG 4 cut(s) 129, 183, 257, 404
Hsp92II CATG 3 cut(s) 139, 206, 533
Kzo9I GATC 1 cut(s) 118
LpnPI CCDG 9 cut(s) 20, 119, 207, 361, 377, 399, 444, 504, 563
LweI GCATC 2 cut(s) 208, 267
MaeI CTAG 1 cut(s) 453
MaeIII GTNAC 2 cut(s) 145, 493
MalI GATC 1 cut(s) 120
MboI GATC 1 cut(s) 118
MboII GAAGA 2 cut(s) 113, 569
MluCI AATT 1 cut(s) 56
MlyI GAGTC 1 cut(s) 55
MnlI CCTC 6 cut(s) 58, 70, 73, 157, 178, 553
MseI TTAA 3 cut(s) 102, 243, 311
MspCI CTTAAG 1 cut(s) 242
MspI CCGG 1 cut(s) 194
MspR9I CCNGG 1 cut(s) 195
NciI CCSGG 1 cut(s) 195
NdeII GATC 1 cut(s) 118
NlaIII CATG 3 cut(s) 139, 206, 533
NmuCI GTSAC 1 cut(s) 493
PfeI GAWTC 2 cut(s) 199, 230
PleI GAGTC 1 cut(s) 54
PpsI GAGTC 1 cut(s) 54
PspFI CCCAGC 1 cut(s) 518
PspPI GGNCC 1 cut(s) 537
PstNI CAGNNNCTG 1 cut(s) 473
RsaI GTAC 2 cut(s) 92, 451
RsaNI GTAC 2 cut(s) 91, 450
SaqAI TTAA 3 cut(s) 102, 243, 311
Sau3AI GATC 1 cut(s) 118
Sau96I GGNCC 1 cut(s) 537
SchI GAGTC 1 cut(s) 55
ScrFI CCNGG 1 cut(s) 195
SetI ASST 6 cut(s) 108, 189, 373, 500, 520, 548
SfaNI GCATC 2 cut(s) 208, 267
SinI GGWCC 1 cut(s) 537
SmlI CTYRAG 1 cut(s) 242
SmoI CTYRAG 1 cut(s) 242
Sse9I AATT 1 cut(s) 56
SspMI CTAG 1 cut(s) 453
StyD4I CCNGG 1 cut(s) 193
StyI CCWWGG 1 cut(s) 236
TaqII GACCGA 1 cut(s) 554
TasI AATT 1 cut(s) 56
TatI WGTACW 1 cut(s) 90
TfiI GAWTC 2 cut(s) 199, 230
Tru1I TTAA 3 cut(s) 102, 243, 311
Tru9I TTAA 3 cut(s) 102, 243, 311
TscAI CASTG 3 cut(s) 187, 466, 474
TseFI GTSAC 1 cut(s) 493
Tsp45I GTSAC 1 cut(s) 493
TspDTI ATGAA 3 cut(s) 191, 315, 546
TspRI CASTG 3 cut(s) 187, 466, 474
Vha464I CTTAAG 1 cut(s) 242
VpaK11BI GGWCC 1 cut(s) 537
XapI RAATTY 1 cut(s) 56
XspI CTAG 1 cut(s) 453
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.