Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0002621

Physical Location & Seq

Genomic Coordinates Reverse (-)

26976375 .. 26978941

Gene Structure 2567 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00187580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGTGTATAGCGGCGTTCGTGTGGCAGTCTCACCCACGCTACCCCTTCCTCCTCCTCCTCAACAGGGACGAATATTTCAACCGGGGAACGGCGGCTTTGCAATGGTGGGACGACAACCTCGGGATATTGGGCGGAAGAGATGCGGTGGAAGGTGGGACATGGCTGGCTTGTTCCAAGGATGGTAAGGTGGCTTTTCTCACTAATGTCAGAGAGCTCAACAGACTTGTGCAATGCAAGAGCAGAGGAGAACTCCCACCTCGTTTCTTGTCGGGCGAAAAGAGCCCGATGGAATTTGCAGAGGAAGTTGTTGAGGAGGCAGATAAGTACAATGGGTTTAACCTGATATTGGCTGATCTTCGTTCTAAGACCATGCTTTATTCTCAACGACTTAGCAATAGTTTCAAAGAGATGCTCAACAAGTATGGAGATGATGAAGTATCGTTAAAGGAAATGGCTCTACGACTAATGACAGACGAGACCAGAGACGACAAAAGCCTTCTACCTTGCATTTATTCTCCAGAAGTAGAATACGAACTAAGTTCCATATATATTGAATATGCCCCTGCATTGGGTTATTATGGTACTAGAAGCACTGAAGCAGTGTCTGTCAATACAAATGGGGAAGTCACCTTTTATGAGAGATTTATAGCGGGAGATTGGCATGAAAGGACCGAGACCTTCCAGATTGAAGAGGAGAGTAAATACGCATGGGACACAGTTGCAAGCATCACCGCACTTGCAGTAGGCCTTGCCAACCCCAGTGGTGACAACTTTCCTAGCACAAGTGCACGGGTTGCAGCCACAATGCTCGCCGCAGGAGCATTTCTTGTGGTTGTCCACAGTCGCAGGGTCGGTCCTGGTTGTGCACCTGTCATCGAAGTTCAGATACTGTTAAACTACCACCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TANGO2

Protein Analysis

302

Amino Acids

33.95

Weight (kDa)

4.88

Isoelectric Point (pI)

40.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TANGO2	PF05742	1 - 128	3.2e-45	Transport and Golgi organisation 2
TANGO2	PF05742	129 - 215	3e-11	Transport and Golgi organisation 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002621)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38260
fragaria_vesca	FvH4_2g16710 FvH4_2g16710 FvH4_2g16710 FvH4_5g25460 FvH4_5g25460
malus_domestica	MD05G1135200.v1.1 MD06G1010300.v1.1
prunus_persica	Prupe.8G179100_v2.0.a1
pyrus_communis	pycom05g13180
rosa_chinensis	RchiOBHm_Chr6g0280841 RchiOBHm_Chr7g0215641
rosa_laevigata	RLG00000002635 RLG00000002636 RLG00000013026
rosa_multiflora	Rmu_co8074068.1_g000001 Rmu_sc0000898.1_g000036 Rmu_sc0007602.1_g000001 Rmu_sc0023262.1_g000006 Rmu_ssc0000024.1_g000008
rosa_roxburghii	Rroxscaffold_3G00243960 Rroxscaffold_7G00187580
rosa_rugosa	Rorug06G0134900 Rorug06G0135000 Rorug07G0155800 Rorug07G0155800
rosa_samantha	Rh3CG366900 Rh6AG248300 Rh6BG249800 Rh6BG249900 Rh6CG251000 Rh6DG242600 Rh7AG292500 Rh7BG284800 Rh7CG312400 Rh7DG295700
rosa_wichuraiana	Rw0G020460 Rw4G008690 Rw6G021460 Rw7G024890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	7 cut(s)	11, 92, 132, 143, 650, 732, 813
AcsI	RAATTY	1 cut(s)	290
AcuI	CTGAAG	1 cut(s)	615
AfaI	GTAC	2 cut(s)	326, 583
AfiI	CCNNNNNNNGG	5 cut(s)	64, 88, 346, 568, 569
AgsI	TTSAA	4 cut(s)	79, 403, 554, 689
AjnI	CCWGG	1 cut(s)	856
AluBI	AGCT	1 cut(s)	214
AluI	AGCT	1 cut(s)	214
Alw21I	GWGCWC	3 cut(s)	216, 790, 868
Alw26I	GTCTC	4 cut(s)	33, 470, 477, 668
Alw44I	GTGCAC	2 cut(s)	786, 864
AlwNI	CAGNNNCTG	2 cut(s)	605, 889
Ama87I	CYCGRG	1 cut(s)	119
AoxI	GGCC	1 cut(s)	745
ApaLI	GTGCAC	2 cut(s)	786, 864
ApeKI	GCWGC	1 cut(s)	797
ApoI	RAATTY	1 cut(s)	290
AspS9I	GGNCC	2 cut(s)	669, 854
AsuC2I	CCSGG	1 cut(s)	83
AsuHPI	GGTGA	4 cut(s)	23, 619, 721, 776
AvaI	CYCGRG	1 cut(s)	119
AvaII	GGWCC	2 cut(s)	669, 854
BaeGI	GKGCMC	2 cut(s)	790, 868
BanII	GRGCYC	2 cut(s)	216, 284
BarI	GAAGNNNNNNTAC	2 cut(s)	870, 902
Bbv12I	GWGCWC	3 cut(s)	216, 790, 868
BbvI	GCAGC	1 cut(s)	809
BccI	CCATC	2 cut(s)	173, 280
BceAI	ACGGC	1 cut(s)	105
BciT130I	CCWGG	1 cut(s)	858
BcnI	CCSGG	1 cut(s)	83
BcoDI	GTCTC	4 cut(s)	33, 470, 477, 668
BfaI	CTAG	2 cut(s)	585, 777
BisI	GCNGC	4 cut(s)	12, 93, 798, 813
BlsI	GCNGC	4 cut(s)	13, 94, 799, 814
Bme1390I	CCNGG	2 cut(s)	83, 858
Bme18I	GGWCC	2 cut(s)	669, 854
BmeT110I	CYCGRG	1 cut(s)	119
BmgT120I	GGNCC	2 cut(s)	669, 854
BmrFI	CCNGG	2 cut(s)	83, 858
BmrI	ACTGGG	1 cut(s)	753
BmsI	GCATC	3 cut(s)	130, 399, 735
BmuI	ACTGGG	1 cut(s)	753
BplI	GAGNNNNNCTC	2 cut(s)	234, 266
BpmI	CTGGAG	1 cut(s)	501
BpuMI	CCSGG	1 cut(s)	83
BsaI	GGTCTC	2 cut(s)	470, 668
BsaJI	CCNNGG	3 cut(s)	82, 118, 174
Bsc4I	CCNNNNNNNGG	5 cut(s)	64, 88, 346, 568, 569
Bse1I	ACTGG	2 cut(s)	759, 904
Bse3DI	GCAATG	2 cut(s)	107, 236
BseBI	CCWGG	1 cut(s)	858
BseDI	CCNNGG	3 cut(s)	82, 118, 174
BseGI	GGATG	1 cut(s)	184
BseLI	CCNNNNNNNGG	5 cut(s)	64, 88, 346, 568, 569
BseMI	GCAATG	2 cut(s)	107, 236
BseNI	ACTGG	2 cut(s)	759, 904
BseRI	GAGGAG	6 cut(s)	41, 44, 47, 258, 326, 707
BseSI	GKGCMC	2 cut(s)	790, 868
BseXI	GCAGC	1 cut(s)	809
BshFI	GGCC	1 cut(s)	747
BsiHKAI	GWGCWC	3 cut(s)	216, 790, 868
BsiHKCI	CYCGRG	1 cut(s)	119
BsiSI	CCGG	1 cut(s)	82
BslFI	GGGAC	4 cut(s)	80, 122, 169, 725
BslI	CCNNNNNNNGG	5 cut(s)	64, 88, 346, 568, 569
BsmAI	GTCTC	4 cut(s)	33, 470, 477, 668
BsmBI	CGTCTC	1 cut(s)	477
BsmFI	GGGAC	4 cut(s)	80, 122, 169, 725
BsnI	GGCC	1 cut(s)	747
Bso31I	GGTCTC	2 cut(s)	470, 668
BsoBI	CYCGRG	1 cut(s)	119
Bsp1286I	GDGCHC	4 cut(s)	216, 284, 790, 868
Bsp143I	GATC	1 cut(s)	352
BspACI	CCGC	7 cut(s)	11, 92, 132, 143, 650, 732, 813
BspANI	GGCC	1 cut(s)	747
BspTNI	GGTCTC	2 cut(s)	470, 668
BsrDI	GCAATG	2 cut(s)	107, 236
BsrI	ACTGG	2 cut(s)	759, 904
BssECI	CCNNGG	3 cut(s)	82, 118, 174
BssMI	GATC	1 cut(s)	352
BssT1I	CCWWGG	1 cut(s)	174
Bst2UI	CCWGG	1 cut(s)	858
Bst4CI	ACNGT	3 cut(s)	718, 842, 891
Bst6I	CTCTTC	2 cut(s)	130, 684
BstAPI	GCANNNNNTGC	1 cut(s)	794
BstC8I	GCNNGC	3 cut(s)	165, 724, 810
BstDEI	CTNAG	3 cut(s)	363, 389, 536
BstF5I	GGATG	1 cut(s)	184
BstKTI	GATC	1 cut(s)	355
BstMAI	GTCTC	4 cut(s)	33, 470, 477, 668
BstMBI	GATC	1 cut(s)	352
BstMWI	GCNNNNNNNGC	3 cut(s)	279, 794, 818
BstNI	CCWGG	1 cut(s)	858
BstSCI	CCNGG	2 cut(s)	81, 856
BstSLI	GKGCMC	2 cut(s)	790, 868
BstV1I	GCAGC	1 cut(s)	809
BsuRI	GGCC	1 cut(s)	747
BtsCI	GGATG	1 cut(s)	184
BtsI	GCAGTG	1 cut(s)	606
BtsIMutI	CAGTG	3 cut(s)	591, 606, 766
Cac8I	GCNNGC	3 cut(s)	165, 724, 810
CaiI	CAGNNNCTG	2 cut(s)	605, 889
Cfr13I	GGNCC	2 cut(s)	669, 854
Csp6I	GTAC	2 cut(s)	325, 582
CspCI	CAANNNNNGTGG	2 cut(s)	742, 777
CviAII	CATG	4 cut(s)	159, 370, 662, 708
CviQI	GTAC	2 cut(s)	325, 582
DdeI	CTNAG	3 cut(s)	363, 389, 536
DpnI	GATC	1 cut(s)	354
DpnII	GATC	1 cut(s)	352
Eam1104I	CTCTTC	2 cut(s)	130, 684
EarI	CTCTTC	2 cut(s)	130, 684
EciI	GGCGGA	1 cut(s)	147
Ecl136II	GAGCTC	1 cut(s)	214
Eco130I	CCWWGG	1 cut(s)	174
Eco147I	AGGCCT	1 cut(s)	747
Eco24I	GRGCYC	2 cut(s)	216, 284
Eco31I	GGTCTC	2 cut(s)	470, 668
Eco47I	GGWCC	2 cut(s)	669, 854
Eco53kI	GAGCTC	1 cut(s)	214
Eco57I	CTGAAG	1 cut(s)	615
Eco88I	CYCGRG	1 cut(s)	119
EcoICRI	GAGCTC	1 cut(s)	214
EcoRII	CCWGG	1 cut(s)	856
EcoT14I	CCWWGG	1 cut(s)	174
EcoT38I	GRGCYC	2 cut(s)	216, 284
ErhI	CCWWGG	1 cut(s)	174
Esp3I	CGTCTC	1 cut(s)	477
FaeI	CATG	4 cut(s)	162, 373, 665, 711
FaqI	GGGAC	4 cut(s)	80, 122, 169, 725
FatI	CATG	4 cut(s)	158, 369, 661, 707
FauI	CCCGC	1 cut(s)	643
Fnu4HI	GCNGC	4 cut(s)	12, 93, 798, 813
FokI	GGATG	1 cut(s)	191
FriOI	GRGCYC	2 cut(s)	216, 284
Fsp4HI	GCNGC	4 cut(s)	12, 93, 798, 813
FspBI	CTAG	2 cut(s)	585, 777
GluI	GCNGC	4 cut(s)	12, 93, 798, 813
GsuI	CTGGAG	1 cut(s)	501
HaeIII	GGCC	1 cut(s)	747
HapII	CCGG	1 cut(s)	82
Hin1II	CATG	4 cut(s)	162, 373, 665, 711
HpaII	CCGG	1 cut(s)	82
HphI	GGTGA	4 cut(s)	23, 619, 721, 776
Hpy166II	GTNNAC	3 cut(s)	788, 838, 866
Hpy188I	TCNGA	2 cut(s)	209, 885
Hpy188III	TCNNGA	3 cut(s)	121, 518, 682
Hpy8I	GTNNAC	3 cut(s)	788, 838, 866
HpyAV	CCTTC	4 cut(s)	55, 143, 506, 688
HpyCH4III	ACNGT	3 cut(s)	718, 842, 891
HpyF10VI	GCNNNNNNNGC	3 cut(s)	279, 794, 818
HpyF3I	CTNAG	3 cut(s)	363, 389, 536
Hsp92II	CATG	4 cut(s)	162, 373, 665, 711
Kzo9I	GATC	1 cut(s)	352
LmnI	GCTCC	1 cut(s)	818
Lsp1109I	GCAGC	1 cut(s)	809
LweI	GCATC	3 cut(s)	130, 399, 735
MaeI	CTAG	2 cut(s)	585, 777
MaeIII	GTNAC	2 cut(s)	625, 764
MalI	GATC	1 cut(s)	354
MboI	GATC	1 cut(s)	352
MboII	GAAGA	3 cut(s)	147, 347, 701
MhlI	GDGCHC	4 cut(s)	216, 284, 790, 868
MluCI	AATT	1 cut(s)	290
MseI	TTAA	3 cut(s)	336, 443, 893
MspI	CCGG	1 cut(s)	82
MspR9I	CCNGG	2 cut(s)	83, 858
MvaI	CCWGG	1 cut(s)	858
MwoI	GCNNNNNNNGC	3 cut(s)	279, 794, 818
NciI	CCSGG	1 cut(s)	83
NdeII	GATC	1 cut(s)	352
NlaIII	CATG	4 cut(s)	162, 373, 665, 711
NmuCI	GTSAC	2 cut(s)	625, 764
PceI	AGGCCT	1 cut(s)	747
PkrI	GCNGC	4 cut(s)	13, 94, 799, 814
Psp124BI	GAGCTC	1 cut(s)	216
Psp6I	CCWGG	1 cut(s)	856
PspGI	CCWGG	1 cut(s)	856
PspPI	GGNCC	2 cut(s)	669, 854
PstNI	CAGNNNCTG	2 cut(s)	605, 889
RsaI	GTAC	2 cut(s)	326, 583
RsaNI	GTAC	2 cut(s)	325, 582
SacI	GAGCTC	1 cut(s)	216
SaqAI	TTAA	3 cut(s)	336, 443, 893
SatI	GCNGC	4 cut(s)	12, 93, 798, 813
Sau3AI	GATC	1 cut(s)	352
Sau96I	GGNCC	2 cut(s)	669, 854
ScrFI	CCNGG	2 cut(s)	83, 858
SduI	GDGCHC	4 cut(s)	216, 284, 790, 868
SfaNI	GCATC	3 cut(s)	130, 399, 735
SinI	GGWCC	2 cut(s)	669, 854
Sse9I	AATT	1 cut(s)	290
SseBI	AGGCCT	1 cut(s)	747
SsiI	CCGC	7 cut(s)	11, 92, 132, 143, 650, 732, 813
SspI	AATATT	1 cut(s)	74
SspMI	CTAG	2 cut(s)	585, 777
SstI	GAGCTC	1 cut(s)	216
StuI	AGGCCT	1 cut(s)	747
StyD4I	CCNGG	2 cut(s)	81, 856
StyI	CCWWGG	1 cut(s)	174
TaaI	ACNGT	3 cut(s)	718, 842, 891
TaqI	TCGA	1 cut(s)	876
TaqII	GACCGA	2 cut(s)	686, 842
TasI	AATT	1 cut(s)	290
TatI	WGTACW	1 cut(s)	324
TauI	GCSGC	3 cut(s)	14, 95, 815
Tru1I	TTAA	3 cut(s)	336, 443, 893
Tru9I	TTAA	3 cut(s)	336, 443, 893
TscAI	CASTG	3 cut(s)	598, 606, 766
TseFI	GTSAC	2 cut(s)	625, 764
TseI	GCWGC	1 cut(s)	797
Tsp45I	GTSAC	2 cut(s)	625, 764
TspDTI	ATGAA	2 cut(s)	447, 678
TspRI	CASTG	3 cut(s)	598, 606, 766
VneI	GTGCAC	2 cut(s)	786, 864
VpaK11BI	GGWCC	2 cut(s)	669, 854
XapI	RAATTY	1 cut(s)	290
XspI	CTAG	2 cut(s)	585, 777

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.