Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002621

Physical Location & Seq

Genomic Coordinates Reverse (-)

19118379 .. 19119753

Gene Structure 1375 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0135000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

ATGGAGAAGGAGCTGGTGGAGGTGTTTGAGGAGGTGATGAAGGCGGCGGAACCCACGAAATCGTGTGACGGAGACGCCGAGGAAAGCAATTCCTTGAGCCTTGGCCCGGTTAGGGATTACATTGTTTATTTTCATTTCATGGATACTCTCGGCTTGAAGAGTAATTGCTTCTTTGAATCCTCTTGTAGCTGGAGGATAGATATGGGTCTCGAACTAACCTGTCATGTACAAGCCAAAGGTATAGAATTTCTATCGAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TANGO2

Protein Analysis

86

Amino Acids

9.71

Weight (kDa)

4.45

Isoelectric Point (pI)

41.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002621)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38260
fragaria_vesca	FvH4_2g16710 FvH4_2g16710 FvH4_2g16710 FvH4_5g25460 FvH4_5g25460
malus_domestica	MD05G1135200.v1.1 MD06G1010300.v1.1
prunus_persica	Prupe.8G179100_v2.0.a1
pyrus_communis	pycom05g13180
rosa_chinensis	RchiOBHm_Chr6g0280841 RchiOBHm_Chr7g0215641
rosa_laevigata	RLG00000002635 RLG00000002636 RLG00000013026
rosa_multiflora	Rmu_co8074068.1_g000001 Rmu_sc0000898.1_g000036 Rmu_sc0007602.1_g000001 Rmu_sc0023262.1_g000006 Rmu_ssc0000024.1_g000008
rosa_roxburghii	Rroxscaffold_3G00243960 Rroxscaffold_7G00187580
rosa_rugosa	Rorug06G0134900 Rorug06G0135000 Rorug07G0155800 Rorug07G0155800
rosa_samantha	Rh3CG366900 Rh6AG248300 Rh6BG249800 Rh6BG249900 Rh6CG251000 Rh6DG242600 Rh7AG292500 Rh7BG284800 Rh7CG312400 Rh7DG295700
rosa_wichuraiana	Rw0G020460 Rw4G008690 Rw6G021460 Rw7G024890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	44, 47
AcsI	RAATTY	1 cut(s)	245
AcyI	GRCGYC	1 cut(s)	75
AfaI	GTAC	1 cut(s)	228
AfiI	CCNNNNNNNGG	2 cut(s)	106, 112
AgsI	TTSAA	2 cut(s)	157, 176
AluBI	AGCT	3 cut(s)	13, 189, 258
AluI	AGCT	3 cut(s)	13, 189, 258
Alw26I	GTCTC	2 cut(s)	66, 212
AoxI	GGCC	1 cut(s)	103
ApoI	RAATTY	1 cut(s)	245
AspS9I	GGNCC	1 cut(s)	104
AsuC2I	CCSGG	1 cut(s)	107
AsuHPI	GGTGA	1 cut(s)	46
BciVI	GTATCC	1 cut(s)	136
BcnI	CCSGG	1 cut(s)	107
BcoDI	GTCTC	2 cut(s)	66, 212
BfaI	CTAG	1 cut(s)	259
BfuI	GTATCC	1 cut(s)	136
BisI	GCNGC	1 cut(s)	45
BlsI	GCNGC	1 cut(s)	46
Bme1390I	CCNGG	1 cut(s)	107
BmgT120I	GGNCC	1 cut(s)	104
BmiI	GGNNCC	1 cut(s)	51
BmrFI	CCNGG	1 cut(s)	107
BpmI	CTGGAG	1 cut(s)	211
BpuEI	CTTGAG	1 cut(s)	115
BpuMI	CCSGG	1 cut(s)	107
BsaHI	GRCGYC	1 cut(s)	75
BsaI	GGTCTC	1 cut(s)	212
BsaJI	CCNNGG	2 cut(s)	78, 100
Bsc4I	CCNNNNNNNGG	2 cut(s)	106, 112
BseDI	CCNNGG	2 cut(s)	78, 100
BseLI	CCNNNNNNNGG	2 cut(s)	106, 112
BseRI	GAGGAG	1 cut(s)	44
BshFI	GGCC	1 cut(s)	105
BsiSI	CCGG	1 cut(s)	107
BslI	CCNNNNNNNGG	2 cut(s)	106, 112
BsmAI	GTCTC	2 cut(s)	66, 212
BsmBI	CGTCTC	1 cut(s)	66
BsnI	GGCC	1 cut(s)	105
Bso31I	GGTCTC	1 cut(s)	212
Bsp1407I	TGTACA	1 cut(s)	226
BspACI	CCGC	2 cut(s)	44, 47
BspANI	GGCC	1 cut(s)	105
BspLI	GGNNCC	1 cut(s)	51
BspTNI	GGTCTC	1 cut(s)	212
BsrGI	TGTACA	1 cut(s)	226
BssECI	CCNNGG	2 cut(s)	78, 100
BssNI	GRCGYC	1 cut(s)	75
BssT1I	CCWWGG	1 cut(s)	100
Bst6I	CTCTTC	1 cut(s)	152
BstACI	GRCGYC	1 cut(s)	75
BstAUI	TGTACA	1 cut(s)	226
BstMAI	GTCTC	2 cut(s)	66, 212
BstSCI	CCNGG	1 cut(s)	105
BsuI	GTATCC	1 cut(s)	136
BsuRI	GGCC	1 cut(s)	105
Cfr13I	GGNCC	1 cut(s)	104
CseI	GACGC	1 cut(s)	83
Csp6I	GTAC	1 cut(s)	227
CviAII	CATG	2 cut(s)	139, 224
CviJI	RGCY	7 cut(s)	13, 99, 105, 153, 189, 233, 258
CviKI_1	RGCY	7 cut(s)	13, 99, 105, 153, 189, 233, 258
CviQI	GTAC	1 cut(s)	227
Eam1104I	CTCTTC	1 cut(s)	152
EarI	CTCTTC	1 cut(s)	152
EciI	GGCGGA	1 cut(s)	62
Eco130I	CCWWGG	1 cut(s)	100
Eco31I	GGTCTC	1 cut(s)	212
EcoT14I	CCWWGG	1 cut(s)	100
ErhI	CCWWGG	1 cut(s)	100
Esp3I	CGTCTC	1 cut(s)	66
FaeI	CATG	2 cut(s)	142, 227
FaiI	YATR	4 cut(s)	140, 203, 225, 242
FatI	CATG	2 cut(s)	138, 223
Fnu4HI	GCNGC	1 cut(s)	45
Fsp4HI	GCNGC	1 cut(s)	45
FspBI	CTAG	1 cut(s)	259
GluI	GCNGC	1 cut(s)	45
GsuI	CTGGAG	1 cut(s)	211
HaeIII	GGCC	1 cut(s)	105
HapII	CCGG	1 cut(s)	107
HgaI	GACGC	1 cut(s)	83
Hin1I	GRCGYC	1 cut(s)	75
Hin1II	CATG	2 cut(s)	142, 227
HinfI	GANTC	1 cut(s)	176
HpaII	CCGG	1 cut(s)	107
HphI	GGTGA	1 cut(s)	46
Hpy188III	TCNNGA	1 cut(s)	209
HpyAV	CCTTC	1 cut(s)	34
Hsp92I	GRCGYC	1 cut(s)	75
Hsp92II	CATG	2 cut(s)	142, 227
LmnI	GCTCC	1 cut(s)	10
LpnPI	CCDG	3 cut(s)	120, 175, 232
MaeI	CTAG	1 cut(s)	259
MaeIII	GTNAC	1 cut(s)	65
MboII	GAAGA	1 cut(s)	169
MluCI	AATT	3 cut(s)	88, 163, 245
MnlI	CCTC	6 cut(s)	13, 22, 25, 73, 186, 190
MspI	CCGG	1 cut(s)	107
MspR9I	CCNGG	1 cut(s)	107
NciI	CCSGG	1 cut(s)	107
NlaIII	CATG	2 cut(s)	142, 227
NlaIV	GGNNCC	1 cut(s)	51
NmeAIII	GCCGAG	2 cut(s)	103, 129
NmuCI	GTSAC	1 cut(s)	65
PcsI	WCGNNNNNNNCGW	1 cut(s)	75
PfeI	GAWTC	1 cut(s)	176
PkrI	GCNGC	1 cut(s)	46
PspN4I	GGNNCC	1 cut(s)	51
PspPI	GGNCC	1 cut(s)	104
RsaI	GTAC	1 cut(s)	228
RsaNI	GTAC	1 cut(s)	227
SatI	GCNGC	1 cut(s)	45
Sau96I	GGNCC	1 cut(s)	104
ScrFI	CCNGG	1 cut(s)	107
SetI	ASST	7 cut(s)	15, 24, 36, 191, 221, 241, 260
SmlI	CTYRAG	1 cut(s)	94
SmoI	CTYRAG	1 cut(s)	94
Sse9I	AATT	3 cut(s)	88, 163, 245
SsiI	CCGC	2 cut(s)	44, 47
SspMI	CTAG	1 cut(s)	259
StyD4I	CCNGG	1 cut(s)	105
StyI	CCWWGG	1 cut(s)	100
TaqI	TCGA	2 cut(s)	210, 254
TasI	AATT	3 cut(s)	88, 163, 245
TatI	WGTACW	1 cut(s)	226
TauI	GCSGC	1 cut(s)	47
TfiI	GAWTC	1 cut(s)	176
TseFI	GTSAC	1 cut(s)	65
Tsp45I	GTSAC	1 cut(s)	65
TspDTI	ATGAA	3 cut(s)	53, 122, 127
TspGWI	ACGGA	1 cut(s)	84
XapI	RAATTY	1 cut(s)	245
XspI	CTAG	1 cut(s)	259

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.