Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0002621

Physical Location & Seq

Genomic Coordinates Forward (+)

16748137 .. 16750940

Gene Structure 2804 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g13180.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGTGTATAGCTGCGTTCGTGTGGCAAAATCACCCAGTTTACCCGTTCCTTCTGCTGCTCAACAGGGACGAATTTCACAGCAGGCCAACAGAGCCTCTGGCATGGTGGGAAGGAGGGGAGATCTTAGGGGGAAGAGATGGATTGGCAGGTGGGACATGGCTGGCTTGCACCAGAGATGGTAAGGTGGCTTTTATCACAAATGTTAGAGAAGTTCAGAAGCTTGCTCAAGCTAAAAGCAGAGGGGACCTTCCGGTTCGATTCTTGGAGAGCAAGAAGAGTCCCATGGAGTTCGCGGATGAAGTTGTGGAGGAGGCGGATCAATACAACGGGTTTAACCTGATATTGGCCGACCTTTGTTCTAGGACCATGGTTTATGTAACCAACAGACCGAAGGAGGACAGGAATTTTGTCACTGAGGTCTCTCCCGGGATCCATGTCTTGTCAAATGCACAACTAGATTCTCCTTGGCCTAAGGCTCAACTACTAGGCGATAGTTTCAGAGAGATACTTATGGAATCCAGCGGCGACGATCTTCCGATAAAATTAATGGTTGAGAAACTAATGACGAACACGGTTAAAGTCGAGGACGAAAGCCTCCTGCCTCACATATATCCTCCGGAACTGGAGCACCATCTCAGCTCCATATTTGTGGAGAAAGCCCCTCAGTTGGGACACTATGGCACTCGAAGCACCTCGGCATTGTCTGTGAAGACTAATGGGGAAGTTAGCTACTACGAGAGATATCTGGAAAATCAAGTGTGGAAAGAAGGAACATTAACTTATCAGATTGGAGATGGCCGTAACTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TANGO2

Protein Analysis

270

Amino Acids

30.43

Weight (kDa)

5.16

Isoelectric Point (pI)

36.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002621)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38260
fragaria_vesca	FvH4_2g16710 FvH4_2g16710 FvH4_2g16710 FvH4_5g25460 FvH4_5g25460
malus_domestica	MD05G1135200.v1.1 MD06G1010300.v1.1
prunus_persica	Prupe.8G179100_v2.0.a1
pyrus_communis	pycom05g13180
rosa_chinensis	RchiOBHm_Chr6g0280841 RchiOBHm_Chr7g0215641
rosa_laevigata	RLG00000002635 RLG00000002636 RLG00000013026
rosa_multiflora	Rmu_co8074068.1_g000001 Rmu_sc0000898.1_g000036 Rmu_sc0007602.1_g000001 Rmu_sc0023262.1_g000006 Rmu_ssc0000024.1_g000008
rosa_roxburghii	Rroxscaffold_3G00243960 Rroxscaffold_7G00187580
rosa_rugosa	Rorug06G0134900 Rorug06G0135000 Rorug07G0155800 Rorug07G0155800
rosa_samantha	Rh3CG366900 Rh6AG248300 Rh6BG249800 Rh6BG249900 Rh6CG251000 Rh6DG242600 Rh7AG292500 Rh7BG284800 Rh7CG312400 Rh7DG295700
rosa_wichuraiana	Rw0G020460 Rw4G008690 Rw6G021460 Rw7G024890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	137
Acc36I	ACCTGC	1 cut(s)	137
AccII	CGCG	1 cut(s)	293
AccIII	TCCGGA	1 cut(s)	616
AciI	CCGC	3 cut(s)	293, 314, 522
AclWI	GGATC	3 cut(s)	324, 424, 437
AcoI	YGGCCR	2 cut(s)	345, 796
AcsI	RAATTY	2 cut(s)	71, 403
AfiI	CCNNNNNNNGG	3 cut(s)	343, 667, 668
AluBI	AGCT	5 cut(s)	11, 220, 230, 639, 729
AluI	AGCT	5 cut(s)	11, 220, 230, 639, 729
Alw21I	GWGCWC	1 cut(s)	630
Alw26I	GTCTC	1 cut(s)	424
AlwI	GGATC	3 cut(s)	324, 424, 437
Ama87I	CYCGRG	1 cut(s)	425
Aor13HI	TCCGGA	1 cut(s)	616
AoxI	GGCC	4 cut(s)	83, 345, 467, 796
ApeKI	GCWGC	2 cut(s)	11, 55
ApoI	RAATTY	2 cut(s)	71, 403
ArsI	GACNNNNNNTTYG	2 cut(s)	389, 421
AseI	ATTAAT	1 cut(s)	545
AspS9I	GGNCC	2 cut(s)	244, 363
AsuC2I	CCSGG	2 cut(s)	426, 427
AsuHPI	GGTGA	1 cut(s)	23
AvaI	CYCGRG	1 cut(s)	425
AvaII	GGWCC	2 cut(s)	244, 363
AxyI	CCTNAGG	1 cut(s)	471
BamHI	GGATCC	1 cut(s)	429
BbsI	GAAGAC	1 cut(s)	716
Bbv12I	GWGCWC	1 cut(s)	630
BbvI	GCAGC	1 cut(s)	42
BccI	CCATC	4 cut(s)	131, 170, 639, 788
BceAI	ACGGC	1 cut(s)	783
BcnI	CCSGG	2 cut(s)	426, 427
BcoDI	GTCTC	1 cut(s)	424
BfaI	CTAG	3 cut(s)	360, 455, 485
BfuAI	ACCTGC	1 cut(s)	137
BglII	AGATCT	1 cut(s)	120
BisI	GCNGC	3 cut(s)	12, 56, 523
BlsI	GCNGC	3 cut(s)	13, 57, 524
Bme1390I	CCNGG	2 cut(s)	426, 427
Bme18I	GGWCC	2 cut(s)	244, 363
BmeT110I	CYCGRG	1 cut(s)	425
BmgT120I	GGNCC	2 cut(s)	244, 363
BmiI	GGNNCC	2 cut(s)	245, 431
BmrFI	CCNGG	2 cut(s)	426, 427
BmrI	ACTGGG	1 cut(s)	29
BmuI	ACTGGG	1 cut(s)	29
BpiI	GAAGAC	1 cut(s)	716
BpmI	CTGGAG	1 cut(s)	644
BpuEI	CTTGAG	1 cut(s)	210
BpuMI	CCSGG	2 cut(s)	426, 427
BsaI	GGTCTC	1 cut(s)	424
BsaJI	CCNNGG	5 cut(s)	282, 366, 425, 464, 693
BsaWI	WCCGGW	2 cut(s)	250, 616
Bsc4I	CCNNNNNNNGG	3 cut(s)	343, 667, 668
Bse1I	ACTGG	2 cut(s)	35, 627
Bse21I	CCTNAGG	1 cut(s)	471
BseAI	TCCGGA	1 cut(s)	616
BseDI	CCNNGG	5 cut(s)	282, 366, 425, 464, 693
BseGI	GGATG	1 cut(s)	301
BseLI	CCNNNNNNNGG	3 cut(s)	343, 667, 668
BseMII	CTCAG	3 cut(s)	405, 649, 677
BseNI	ACTGG	2 cut(s)	35, 627
BseRI	GAGGAG	1 cut(s)	323
BseXI	GCAGC	1 cut(s)	42
Bsh1236I	CGCG	1 cut(s)	293
BshFI	GGCC	4 cut(s)	85, 347, 469, 798
BsiHKAI	GWGCWC	1 cut(s)	630
BsiHKCI	CYCGRG	1 cut(s)	425
BsiSI	CCGG	3 cut(s)	251, 426, 617
BslFI	GGGAC	5 cut(s)	80, 166, 257, 264, 684
BslI	CCNNNNNNNGG	3 cut(s)	343, 667, 668
BsmAI	GTCTC	1 cut(s)	424
BsmFI	GGGAC	5 cut(s)	80, 166, 257, 264, 684
BsnI	GGCC	4 cut(s)	85, 347, 469, 798
Bso31I	GGTCTC	1 cut(s)	424
BsoBI	CYCGRG	1 cut(s)	425
Bsp1286I	GDGCHC	1 cut(s)	630
Bsp13I	TCCGGA	1 cut(s)	616
Bsp143I	GATC	4 cut(s)	120, 316, 429, 529
Bsp19I	CCATGG	2 cut(s)	282, 366
BspACI	CCGC	3 cut(s)	293, 314, 522
BspANI	GGCC	4 cut(s)	85, 347, 469, 798
BspCNI	CTCAG	3 cut(s)	406, 648, 676
BspEI	TCCGGA	1 cut(s)	616
BspFNI	CGCG	1 cut(s)	293
BspLI	GGNNCC	2 cut(s)	245, 431
BspMI	ACCTGC	1 cut(s)	137
BspPI	GGATC	3 cut(s)	324, 424, 437
BspTNI	GGTCTC	1 cut(s)	424
BsrI	ACTGG	2 cut(s)	35, 627
BssECI	CCNNGG	5 cut(s)	282, 366, 425, 464, 693
BssMI	GATC	4 cut(s)	120, 316, 429, 529
BssT1I	CCWWGG	3 cut(s)	282, 366, 464
Bst4CI	ACNGT	1 cut(s)	574
Bst6I	CTCTTC	2 cut(s)	127, 269
BstC8I	GCNNGC	4 cut(s)	83, 162, 166, 222
BstDEI	CTNAG	5 cut(s)	124, 414, 471, 635, 663
BstDSI	CCRYGG	2 cut(s)	282, 366
BstF5I	GGATG	1 cut(s)	301
BstFNI	CGCG	1 cut(s)	293
BstKTI	GATC	4 cut(s)	123, 319, 432, 532
BstMAI	GTCTC	1 cut(s)	424
BstMBI	GATC	4 cut(s)	120, 316, 429, 529
BstMWI	GCNNNNNNNGC	2 cut(s)	91, 687
BstSCI	CCNGG	2 cut(s)	424, 425
BstUI	CGCG	1 cut(s)	293
BstV1I	GCAGC	1 cut(s)	42
BstV2I	GAAGAC	1 cut(s)	716
BstX2I	RGATCY	2 cut(s)	120, 429
BstXI	CCANNNNNNTGG	1 cut(s)	649
BstYI	RGATCY	2 cut(s)	120, 429
Bsu36I	CCTNAGG	1 cut(s)	471
BsuRI	GGCC	4 cut(s)	85, 347, 469, 798
BtgI	CCRYGG	2 cut(s)	282, 366
BtsCI	GGATG	1 cut(s)	301
BtsIMutI	CAGTG	1 cut(s)	411
BveI	ACCTGC	1 cut(s)	137
Cac8I	GCNNGC	4 cut(s)	83, 162, 166, 222
Cfr13I	GGNCC	2 cut(s)	244, 363
Cfr9I	CCCGGG	1 cut(s)	425
CviAII	CATG	5 cut(s)	102, 156, 283, 367, 434
DdeI	CTNAG	5 cut(s)	124, 414, 471, 635, 663
DpnI	GATC	4 cut(s)	122, 318, 431, 531
DpnII	GATC	4 cut(s)	120, 316, 429, 529
EaeI	YGGCCR	2 cut(s)	345, 796
Eam1104I	CTCTTC	2 cut(s)	127, 269
EarI	CTCTTC	2 cut(s)	127, 269
EciI	GGCGGA	1 cut(s)	329
Eco130I	CCWWGG	3 cut(s)	282, 366, 464
Eco31I	GGTCTC	1 cut(s)	424
Eco32I	GATATC	1 cut(s)	743
Eco47I	GGWCC	2 cut(s)	244, 363
Eco81I	CCTNAGG	1 cut(s)	471
Eco88I	CYCGRG	1 cut(s)	425
EcoO109I	RGGNCCY	1 cut(s)	244
EcoRV	GATATC	1 cut(s)	743
EcoT14I	CCWWGG	3 cut(s)	282, 366, 464
ErhI	CCWWGG	3 cut(s)	282, 366, 464
FaeI	CATG	5 cut(s)	105, 159, 286, 370, 437
FaqI	GGGAC	5 cut(s)	80, 166, 257, 264, 684
FatI	CATG	5 cut(s)	101, 155, 282, 366, 433
Fnu4HI	GCNGC	3 cut(s)	12, 56, 523
FokI	GGATG	1 cut(s)	308
Fsp4HI	GCNGC	3 cut(s)	12, 56, 523
FspBI	CTAG	3 cut(s)	360, 455, 485
GluI	GCNGC	3 cut(s)	12, 56, 523
GsuI	CTGGAG	1 cut(s)	644
HaeIII	GGCC	4 cut(s)	85, 347, 469, 798
HapII	CCGG	3 cut(s)	251, 426, 617
Hin1II	CATG	5 cut(s)	105, 159, 286, 370, 437
HindIII	AAGCTT	1 cut(s)	218
HinfI	GANTC	4 cut(s)	258, 277, 458, 515
HpaII	CCGG	3 cut(s)	251, 426, 617
HphI	GGTGA	1 cut(s)	23
Hpy166II	GTNNAC	1 cut(s)	40
Hpy188I	TCNGA	4 cut(s)	216, 500, 537, 786
Hpy188III	TCNNGA	2 cut(s)	617, 746
Hpy8I	GTNNAC	1 cut(s)	40
Hpy99I	CGWCG	1 cut(s)	530
HpyAV	CCTTC	5 cut(s)	59, 104, 257, 385, 761
HpyCH4III	ACNGT	1 cut(s)	574
HpyCH4V	TGCA	2 cut(s)	168, 449
HpyF10VI	GCNNNNNNNGC	2 cut(s)	91, 687
HpyF3I	CTNAG	5 cut(s)	124, 414, 471, 635, 663
Hsp92II	CATG	5 cut(s)	105, 159, 286, 370, 437
Kpn2I	TCCGGA	1 cut(s)	616
Kzo9I	GATC	4 cut(s)	120, 316, 429, 529
LmnI	GCTCC	2 cut(s)	625, 644
Lsp1109I	GCAGC	1 cut(s)	42
MaeI	CTAG	3 cut(s)	360, 455, 485
MaeIII	GTNAC	3 cut(s)	376, 409, 800
MalI	GATC	4 cut(s)	122, 318, 431, 531
MboI	GATC	4 cut(s)	120, 316, 429, 529
MboII	GAAGA	4 cut(s)	144, 286, 524, 721
MflI	RGATCY	2 cut(s)	120, 429
MhlI	GDGCHC	1 cut(s)	630
MluCI	AATT	3 cut(s)	71, 403, 542
MlyI	GAGTC	1 cut(s)	286
MroI	TCCGGA	1 cut(s)	616
MseI	TTAA	4 cut(s)	333, 545, 576, 776
MslI	CAYNNNNRTG	1 cut(s)	647
MspA1I	CMGCKG	1 cut(s)	522
MspI	CCGG	3 cut(s)	251, 426, 617
MspR9I	CCNGG	2 cut(s)	426, 427
MvnI	CGCG	1 cut(s)	293
MwoI	GCNNNNNNNGC	2 cut(s)	91, 687
NciI	CCSGG	2 cut(s)	426, 427
NcoI	CCATGG	2 cut(s)	282, 366
NdeII	GATC	4 cut(s)	120, 316, 429, 529
NlaIII	CATG	5 cut(s)	105, 159, 286, 370, 437
NlaIV	GGNNCC	2 cut(s)	245, 431
NmeAIII	GCCGAG	1 cut(s)	674
NmuCI	GTSAC	1 cut(s)	409
PaqCI	CACCTGC	1 cut(s)	137
PfeI	GAWTC	3 cut(s)	258, 458, 515
PkrI	GCNGC	3 cut(s)	13, 57, 524
PleI	GAGTC	1 cut(s)	285
PpsI	GAGTC	1 cut(s)	285
PpuMI	RGGWCCY	1 cut(s)	244
PshBI	ATTAAT	1 cut(s)	545
Psp5II	RGGWCCY	1 cut(s)	244
PspN4I	GGNNCC	2 cut(s)	245, 431
PspPI	GGNCC	2 cut(s)	244, 363
PspPPI	RGGWCCY	1 cut(s)	244
PsuI	RGATCY	2 cut(s)	120, 429
RseI	CAYNNNNRTG	1 cut(s)	647
SaqAI	TTAA	4 cut(s)	333, 545, 576, 776
SatI	GCNGC	3 cut(s)	12, 56, 523
Sau3AI	GATC	4 cut(s)	120, 316, 429, 529
Sau96I	GGNCC	2 cut(s)	244, 363
SchI	GAGTC	1 cut(s)	286
ScrFI	CCNGG	2 cut(s)	426, 427
SduI	GDGCHC	1 cut(s)	630
SinI	GGWCC	2 cut(s)	244, 363
SmaI	CCCGGG	1 cut(s)	427
SmiMI	CAYNNNNRTG	1 cut(s)	647
SmlI	CTYRAG	1 cut(s)	225
SmoI	CTYRAG	1 cut(s)	225
Sse9I	AATT	3 cut(s)	71, 403, 542
SsiI	CCGC	3 cut(s)	293, 314, 522
SspMI	CTAG	3 cut(s)	360, 455, 485
StyD4I	CCNGG	2 cut(s)	424, 425
StyI	CCWWGG	3 cut(s)	282, 366, 464
TaaI	ACNGT	1 cut(s)	574
TaqI	TCGA	3 cut(s)	256, 582, 685
TaqII	GACCGA	1 cut(s)	403
TasI	AATT	3 cut(s)	71, 403, 542
TauI	GCSGC	1 cut(s)	525
TfiI	GAWTC	3 cut(s)	258, 458, 515
Tru1I	TTAA	4 cut(s)	333, 545, 576, 776
Tru9I	TTAA	4 cut(s)	333, 545, 576, 776
TscAI	CASTG	1 cut(s)	418
TseFI	GTSAC	1 cut(s)	409
TseI	GCWGC	2 cut(s)	11, 55
Tsp45I	GTSAC	1 cut(s)	409
TspDTI	ATGAA	1 cut(s)	312
TspMI	CCCGGG	1 cut(s)	425
TspRI	CASTG	1 cut(s)	418
VpaK11BI	GGWCC	2 cut(s)	244, 363
VspI	ATTAAT	1 cut(s)	545
XapI	RAATTY	2 cut(s)	71, 403
XmaI	CCCGGG	1 cut(s)	425
XspI	CTAG	3 cut(s)	360, 455, 485

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.