Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0002621

Physical Location & Seq

Genomic Coordinates Forward (+)

18018703 .. 18021435

Gene Structure 2733 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G179100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGTGCATAGCTGTGTTCGTATGGCAAAACCACCCAATTTACCCGCTCCTTCTGTTGTTCAACAGGGACGAGTTTAAAAGTAGGCCAACAAAGCCTTTGGCATGGTGGGAAGGAGGGAAGATCTTAGGGGGAAGAGATGGGCTGGCAGGAGGGACATGGCTGGCTTGTACCAGAGATGGCAAGGTGGCTTTTATCACAAATGTTAGAGAAGTTGAGAAACTTGCTCAAGCTAAGAGCAGAGGGGACCTCCCAGTTCGGTTCTTGGAGGGCAAAAAGAGTGCCATGGAGTTTGCTGAGGAAGTTGCAGAGGAGGCAGGTCAGTACAATGGGTTTAATCTGATATTGGCTGATCTTTGTTCCAAGGCCATGGTTTATGTAACCAACAGACCAAAGGAGGACAAAAGTTTTGTCACCGAGGTCTCACCTGGGATTCATGTACTGTCAAATGCACAGCTAGATTCTCCTTGGCCTAAGGTTCAACGACTAGGCGACAGTTTCAAAGAGCTACTACACGAACACGGCGGCGACAATGATCTTCCGATCAAAGAAATGGTTGAAAAACTGATGATGAACACGATTAAAGATGATGAAGAAAGCTTGCTGCCTCACGTTTATCCTCCAGAACTGGAATACCATTTGAGTTCCATATTTGTAGAAAAAGCCCCTCAGCTGGGACATTATGGCACCAGAAGCACATCAGCATTGTGCGTGAAGACAAGTGGGGAAGTTATCTACTATGAGAGATATCTGGAAAATGAACTGTGGAAAGAAGGGACAGTAACTTATCACATGGACATGGGCAGAGGAGAAGAAGAAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TANGO2

Protein Analysis

274

Amino Acids

30.95

Weight (kDa)

5.38

Isoelectric Point (pI)

31.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002621)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38260
fragaria_vesca	FvH4_2g16710 FvH4_2g16710 FvH4_2g16710 FvH4_5g25460 FvH4_5g25460
malus_domestica	MD05G1135200.v1.1 MD06G1010300.v1.1
prunus_persica	Prupe.8G179100_v2.0.a1
pyrus_communis	pycom05g13180
rosa_chinensis	RchiOBHm_Chr6g0280841 RchiOBHm_Chr7g0215641
rosa_laevigata	RLG00000002635 RLG00000002636 RLG00000013026
rosa_multiflora	Rmu_co8074068.1_g000001 Rmu_sc0000898.1_g000036 Rmu_sc0007602.1_g000001 Rmu_sc0023262.1_g000006 Rmu_ssc0000024.1_g000008
rosa_roxburghii	Rroxscaffold_3G00243960 Rroxscaffold_7G00187580
rosa_rugosa	Rorug06G0134900 Rorug06G0135000 Rorug07G0155800 Rorug07G0155800
rosa_samantha	Rh3CG366900 Rh6AG248300 Rh6BG249800 Rh6BG249900 Rh6CG251000 Rh6DG242600 Rh7AG292500 Rh7BG284800 Rh7CG312400 Rh7DG295700
rosa_wichuraiana	Rw0G020460 Rw4G008690 Rw6G021460 Rw7G024890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	305
AccB1I	GGYRCC	1 cut(s)	683
AccBSI	CCGCTC	1 cut(s)	46
AciI	CCGC	2 cut(s)	44, 522
AfaI	GTAC	3 cut(s)	169, 323, 438
AfiI	CCNNNNNNNGG	2 cut(s)	670, 671
AgsI	TTSAA	4 cut(s)	61, 479, 499, 557
AjnI	CCWGG	1 cut(s)	424
AluBI	AGCT	6 cut(s)	11, 230, 454, 505, 597, 670
AluI	AGCT	6 cut(s)	11, 230, 454, 505, 597, 670
Alw26I	GTCTC	1 cut(s)	424
AoxI	GGCC	3 cut(s)	83, 363, 467
ApeKI	GCWGC	1 cut(s)	601
ArsI	GACNNNNNNTTYG	4 cut(s)	389, 393, 421, 425
AspS9I	GGNCC	1 cut(s)	244
AsuHPI	GGTGA	2 cut(s)	403, 414
AvaII	GGWCC	1 cut(s)	244
AxyI	CCTNAGG	1 cut(s)	471
BanI	GGYRCC	1 cut(s)	683
BbsI	GAAGAC	1 cut(s)	719
BbvCI	CCTCAGC	2 cut(s)	294, 666
BbvI	GCAGC	1 cut(s)	588
BccI	CCATC	2 cut(s)	131, 170
BceAI	ACGGC	1 cut(s)	535
BciT130I	CCWGG	1 cut(s)	426
BcoDI	GTCTC	1 cut(s)	424
BfaI	CTAG	2 cut(s)	455, 485
BfuAI	ACCTGC	1 cut(s)	305
BglII	AGATCT	1 cut(s)	120
BisI	GCNGC	2 cut(s)	523, 602
BlsI	GCNGC	2 cut(s)	524, 603
Bme1390I	CCNGG	1 cut(s)	426
Bme18I	GGWCC	1 cut(s)	244
BmgT120I	GGNCC	1 cut(s)	244
BmiI	GGNNCC	2 cut(s)	245, 685
BmrFI	CCNGG	1 cut(s)	426
BmrI	ACTGGG	1 cut(s)	245
BmuI	ACTGGG	1 cut(s)	245
BpiI	GAAGAC	1 cut(s)	719
BplI	GAGNNNNNCTC	2 cut(s)	231, 263
BpmI	CTGGAG	1 cut(s)	603
Bpu10I	CCTNAGC	2 cut(s)	294, 666
BpuEI	CTTGAG	1 cut(s)	210
BsaI	GGTCTC	1 cut(s)	424
BsaJI	CCNNGG	6 cut(s)	282, 360, 366, 414, 425, 464
Bsc4I	CCNNNNNNNGG	2 cut(s)	670, 671
Bse1I	ACTGG	2 cut(s)	251, 630
Bse21I	CCTNAGG	1 cut(s)	471
BseBI	CCWGG	1 cut(s)	426
BseDI	CCNNGG	6 cut(s)	282, 360, 366, 414, 425, 464
BseLI	CCNNNNNNNGG	2 cut(s)	670, 671
BseMII	CTCAG	2 cut(s)	285, 680
BseNI	ACTGG	2 cut(s)	251, 630
BseRI	GAGGAG	2 cut(s)	323, 819
BseXI	GCAGC	1 cut(s)	588
BseYI	CCCAGC	1 cut(s)	670
BshFI	GGCC	3 cut(s)	85, 365, 469
BshNI	GGYRCC	1 cut(s)	683
BslFI	GGGAC	5 cut(s)	80, 166, 257, 687, 787
BslI	CCNNNNNNNGG	2 cut(s)	670, 671
BsmAI	GTCTC	1 cut(s)	424
BsmFI	GGGAC	5 cut(s)	80, 166, 257, 687, 787
BsnI	GGCC	3 cut(s)	85, 365, 469
Bso31I	GGTCTC	1 cut(s)	424
Bsp143I	GATC	4 cut(s)	120, 349, 532, 540
Bsp19I	CCATGG	2 cut(s)	282, 366
BspACI	CCGC	2 cut(s)	44, 522
BspANI	GGCC	3 cut(s)	85, 365, 469
BspCNI	CTCAG	2 cut(s)	286, 679
BspLI	GGNNCC	2 cut(s)	245, 685
BspMI	ACCTGC	1 cut(s)	305
BspT107I	GGYRCC	1 cut(s)	683
BspTNI	GGTCTC	1 cut(s)	424
BsrBI	CCGCTC	1 cut(s)	46
BsrI	ACTGG	2 cut(s)	251, 630
BssECI	CCNNGG	6 cut(s)	282, 360, 366, 414, 425, 464
BssMI	GATC	4 cut(s)	120, 349, 532, 540
BssT1I	CCWWGG	4 cut(s)	282, 360, 366, 464
Bst2UI	CCWGG	1 cut(s)	426
Bst4CI	ACNGT	4 cut(s)	441, 494, 762, 778
Bst6I	CTCTTC	1 cut(s)	127
BstC8I	GCNNGC	3 cut(s)	144, 162, 599
BstDEI	CTNAG	5 cut(s)	124, 231, 294, 471, 666
BstDSI	CCRYGG	2 cut(s)	282, 366
BstKTI	GATC	4 cut(s)	123, 352, 535, 543
BstMAI	GTCTC	1 cut(s)	424
BstMBI	GATC	4 cut(s)	120, 349, 532, 540
BstMWI	GCNNNNNNNGC	3 cut(s)	91, 311, 690
BstNI	CCWGG	1 cut(s)	426
BstSCI	CCNGG	1 cut(s)	424
BstV1I	GCAGC	1 cut(s)	588
BstV2I	GAAGAC	1 cut(s)	719
BstX2I	RGATCY	1 cut(s)	120
BstXI	CCANNNNNNTGG	1 cut(s)	367
BstYI	RGATCY	1 cut(s)	120
Bsu36I	CCTNAGG	1 cut(s)	471
BsuRI	GGCC	3 cut(s)	85, 365, 469
BtgI	CCRYGG	2 cut(s)	282, 366
BveI	ACCTGC	1 cut(s)	305
Cac8I	GCNNGC	3 cut(s)	144, 162, 599
Cfr13I	GGNCC	1 cut(s)	244
Csp6I	GTAC	3 cut(s)	168, 322, 437
CviAII	CATG	7 cut(s)	102, 156, 283, 367, 434, 790, 796
CviQI	GTAC	3 cut(s)	168, 322, 437
DdeI	CTNAG	5 cut(s)	124, 231, 294, 471, 666
DpnI	GATC	4 cut(s)	122, 351, 534, 542
DpnII	GATC	4 cut(s)	120, 349, 532, 540
DraI	TTTAAA	1 cut(s)	76
Eam1104I	CTCTTC	1 cut(s)	127
EarI	CTCTTC	1 cut(s)	127
Eco130I	CCWWGG	4 cut(s)	282, 360, 366, 464
Eco31I	GGTCTC	1 cut(s)	424
Eco32I	GATATC	1 cut(s)	746
Eco47I	GGWCC	1 cut(s)	244
Eco81I	CCTNAGG	1 cut(s)	471
EcoO109I	RGGNCCY	1 cut(s)	244
EcoRII	CCWGG	1 cut(s)	424
EcoRV	GATATC	1 cut(s)	746
EcoT14I	CCWWGG	4 cut(s)	282, 360, 366, 464
ErhI	CCWWGG	4 cut(s)	282, 360, 366, 464
FaeI	CATG	7 cut(s)	105, 159, 286, 370, 437, 793, 799
FaqI	GGGAC	5 cut(s)	80, 166, 257, 687, 787
FatI	CATG	7 cut(s)	101, 155, 282, 366, 433, 789, 795
FauI	CCCGC	1 cut(s)	51
Fnu4HI	GCNGC	2 cut(s)	523, 602
Fsp4HI	GCNGC	2 cut(s)	523, 602
FspBI	CTAG	2 cut(s)	455, 485
GluI	GCNGC	2 cut(s)	523, 602
GsaI	CCCAGC	1 cut(s)	674
GsuI	CTGGAG	1 cut(s)	603
HaeIII	GGCC	3 cut(s)	85, 365, 469
Hin1II	CATG	7 cut(s)	105, 159, 286, 370, 437, 793, 799
HindIII	AAGCTT	1 cut(s)	595
HinfI	GANTC	2 cut(s)	430, 458
HphI	GGTGA	2 cut(s)	403, 414
Hpy188I	TCNGA	2 cut(s)	339, 540
Hpy188III	TCNNGA	2 cut(s)	620, 749
HpyAV	CCTTC	3 cut(s)	59, 104, 764
HpyCH4III	ACNGT	4 cut(s)	441, 494, 762, 778
HpyCH4IV	ACGT	1 cut(s)	609
HpyCH4V	TGCA	3 cut(s)	6, 305, 449
HpyF10VI	GCNNNNNNNGC	3 cut(s)	91, 311, 690
HpyF3I	CTNAG	5 cut(s)	124, 231, 294, 471, 666
HpySE526I	ACGT	1 cut(s)	609
Hsp92II	CATG	7 cut(s)	105, 159, 286, 370, 437, 793, 799
Kzo9I	GATC	4 cut(s)	120, 349, 532, 540
LmnI	GCTCC	1 cut(s)	51
Lsp1109I	GCAGC	1 cut(s)	588
MaeI	CTAG	2 cut(s)	455, 485
MaeII	ACGT	1 cut(s)	609
MaeIII	GTNAC	3 cut(s)	376, 409, 778
MalI	GATC	4 cut(s)	122, 351, 534, 542
MbiI	CCGCTC	1 cut(s)	46
MboI	GATC	4 cut(s)	120, 349, 532, 540
MboII	GAAGA	6 cut(s)	130, 144, 527, 602, 724, 821
MflI	RGATCY	1 cut(s)	120
MluCI	AATT	1 cut(s)	36
MseI	TTAA	3 cut(s)	75, 333, 579
MslI	CAYNNNNRTG	2 cut(s)	11, 794
MspA1I	CMGCKG	1 cut(s)	670
MspR9I	CCNGG	1 cut(s)	426
MvaI	CCWGG	1 cut(s)	426
MwoI	GCNNNNNNNGC	3 cut(s)	91, 311, 690
NcoI	CCATGG	2 cut(s)	282, 366
NdeII	GATC	4 cut(s)	120, 349, 532, 540
NlaIII	CATG	7 cut(s)	105, 159, 286, 370, 437, 793, 799
NlaIV	GGNNCC	2 cut(s)	245, 685
NmuCI	GTSAC	1 cut(s)	409
PfeI	GAWTC	2 cut(s)	430, 458
PkrI	GCNGC	2 cut(s)	524, 603
PpuMI	RGGWCCY	1 cut(s)	244
Psp5II	RGGWCCY	1 cut(s)	244
Psp6I	CCWGG	1 cut(s)	424
PspFI	CCCAGC	1 cut(s)	670
PspGI	CCWGG	1 cut(s)	424
PspN4I	GGNNCC	2 cut(s)	245, 685
PspPI	GGNCC	1 cut(s)	244
PspPPI	RGGWCCY	1 cut(s)	244
PsuI	RGATCY	1 cut(s)	120
PvuII	CAGCTG	1 cut(s)	670
RsaI	GTAC	3 cut(s)	169, 323, 438
RsaNI	GTAC	3 cut(s)	168, 322, 437
RseI	CAYNNNNRTG	2 cut(s)	11, 794
SaqAI	TTAA	3 cut(s)	75, 333, 579
SatI	GCNGC	2 cut(s)	523, 602
Sau3AI	GATC	4 cut(s)	120, 349, 532, 540
Sau96I	GGNCC	1 cut(s)	244
ScrFI	CCNGG	1 cut(s)	426
SinI	GGWCC	1 cut(s)	244
SmiMI	CAYNNNNRTG	2 cut(s)	11, 794
SmlI	CTYRAG	1 cut(s)	225
SmoI	CTYRAG	1 cut(s)	225
Sse9I	AATT	1 cut(s)	36
SsiI	CCGC	2 cut(s)	44, 522
SspMI	CTAG	2 cut(s)	455, 485
StyD4I	CCNGG	1 cut(s)	424
StyI	CCWWGG	4 cut(s)	282, 360, 366, 464
TaaI	ACNGT	4 cut(s)	441, 494, 762, 778
TaiI	ACGT	1 cut(s)	612
TasI	AATT	1 cut(s)	36
TatI	WGTACW	2 cut(s)	321, 436
TauI	GCSGC	1 cut(s)	525
TfiI	GAWTC	2 cut(s)	430, 458
Tru1I	TTAA	3 cut(s)	75, 333, 579
Tru9I	TTAA	3 cut(s)	75, 333, 579
TseFI	GTSAC	1 cut(s)	409
TseI	GCWGC	1 cut(s)	601
Tsp45I	GTSAC	1 cut(s)	409
TspDTI	ATGAA	4 cut(s)	422, 584, 603, 771
VpaK11BI	GGWCC	1 cut(s)	244
XspI	CTAG	2 cut(s)	455, 485

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.