Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000929

Physical Location & Seq

Genomic Coordinates Reverse (-)

1155049 .. 1155724

Gene Structure 676 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G04210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGGCCCAAATTGAGGATAAAAGTAGGAAACTAGACTGCATACCAATTTGTCCTTTATTCGACGCTGGTCGCCAGTGTACAAGAGGTACCATGTGTCTATACCGCCATGAGATCAACAGAGGCTTAGATTGTCATGGTCGTTCTGGGTTAGAAAACCCATTTGTACTCGAGGTGCTTGCAAGAGCTTGTAACACGGGCCCTTTGAAACCACCAGAGGATCAAAGTATTAAAACTCTTTACATCCGTAGACTTATTAACTCCAGTGTCCTCGAGCAGGACATCCGAGACCATTTCTGCCCCTATGGTGAAATCGAATCTATTGTTATCTTCCCCCACCGAGGAGGAGGCACCTGTGCCTTCCTCACTTACACTACCCGTCTAGCTGCTGAGAAGGCCATGCTTGAGCTCTCCTCCTGGACTGACATCAAAGGCCAGAGGGTTAAACTCTTGTGGGGACCTACTGAAAAATGGCAGCACAAAATGACTGGTGCTGCCATTTCTTCAACCCAAGAGGTTGGTTCTTCTAGCTCCAATACTGCTGACTTGGTAACTAAATTAGTACATTCTCTAGAAAAGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000387 GO:0000398 GO:0000974 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0017069 GO:0017070 GO:0022607 GO:0022613 GO:0022618 GO:0032991 GO:0034622 GO:0034641 GO:0036002 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0065003 GO:0071006 GO:0071007 GO:0071012 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1 Torus

Protein Analysis

193

Amino Acids

21.58

Weight (kDa)

8.12

Isoelectric Point (pI)

42.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	79 - 147	1.5e-08	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000929)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07360 AT2G29580 AT5G04210 AT5G07060 AT5G07060
fragaria_vesca	FvH4_4g11590 FvH4_4g11590 FvH4_4g11590 FvH4_4g11590 FvH4_4g11590 FvH4_4g36530 FvH4_4g36530 FvH4_7g07370
malus_domestica	MD01G1110000.v1.1 MD07G1175800.v1.1 MD16G1006600.v1.1
prunus_persica	Prupe.2G214800_v2.0.a1 Prupe.8G143100_v2.0.a1 Prupe.8G143100_v2.0.a1 Prupe.8G143100_v2.0.a1
pyrus_communis	pycom01g13690 pycom07g17000 pycom16g00630
rosa_chinensis	RchiOBHm_Chr1g0337351 RchiOBHm_Chr4g0408701 RchiOBHm_Chr4g0446281
rosa_laevigata	RLG00000005673 RLG00000008640 RLG00000029280 RLG00000029283
rosa_multiflora	Rmu_co8341103.1_g000001 Rmu_co8350441.1_g000001 Rmu_co8408813.1_g000001 Rmu_co8519167.1_g000003 Rmu_co8522047.1_g000002 Rmu_sc0002266.1_g000007 Rmu_sc0003060.1_g000002 Rmu_sc0005878.1_g000023 Rmu_sc0021927.1_g000001
rosa_roxburghii	Rroxscaffold_4G00314450 Rroxscaffold_4G00314490 Rroxscaffold_5G00353060 Rroxscaffold_5G00386720
rosa_rugosa	Rorug01G0134600.1 Rorug01G0134800.1 Rorug04G0086900 Rorug04G0369600 Rorug04G0369600
rosa_samantha	Rh1AG153600 Rh1BG122900 Rh1BG123100 Rh1CG144600 Rh1DG161300 Rh1DG161500 Rh4AG431500 Rh4BG148400 Rh4BG440900 Rh4CG159100 Rh4CG458200 Rh4DG144000 Rh4DG439400
rosa_wichuraiana	Rw1G012580 Rw4G012370 Rw4G036850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	86
AccB1I	GGYRCC	2 cut(s)	86, 347
AccI	GTMKAC	1 cut(s)	247
AciI	CCGC	1 cut(s)	103
AclWI	GGATC	1 cut(s)	225
AfaI	GTAC	4 cut(s)	79, 88, 165, 561
AfiI	CCNNNNNNNGG	3 cut(s)	13, 274, 338
AgsI	TTSAA	2 cut(s)	205, 504
AjnI	CCWGG	1 cut(s)	413
AluBI	AGCT	5 cut(s)	185, 383, 406, 528, 577
AluI	AGCT	5 cut(s)	185, 383, 406, 528, 577
Alw21I	GWGCWC	1 cut(s)	408
Alw26I	GTCTC	1 cut(s)	279
AlwI	GGATC	1 cut(s)	225
Ama87I	CYCGRG	2 cut(s)	167, 269
AoxI	GGCC	4 cut(s)	3, 196, 393, 430
ApaI	GGGCCC	1 cut(s)	200
ApeKI	GCWGC	3 cut(s)	383, 472, 491
Asp718I	GGTACC	1 cut(s)	86
AspS9I	GGNCC	4 cut(s)	4, 196, 197, 455
AsuHPI	GGTGA	1 cut(s)	317
AvaI	CYCGRG	2 cut(s)	167, 269
AvaII	GGWCC	1 cut(s)	455
BaeGI	GKGCMC	1 cut(s)	200
BanI	GGYRCC	2 cut(s)	86, 347
BanII	GRGCYC	2 cut(s)	200, 408
Bbv12I	GWGCWC	1 cut(s)	408
BbvI	GCAGC	3 cut(s)	370, 478, 484
BcgI	CGANNNNNNTGC	2 cut(s)	158, 192
BciT130I	CCWGG	1 cut(s)	415
BcoDI	GTCTC	1 cut(s)	279
BfaI	CTAG	4 cut(s)	32, 380, 525, 569
BisI	GCNGC	3 cut(s)	384, 473, 492
BlsI	GCNGC	3 cut(s)	385, 474, 493
Bme1390I	CCNGG	1 cut(s)	415
Bme18I	GGWCC	1 cut(s)	455
BmeT110I	CYCGRG	2 cut(s)	167, 269
BmgT120I	GGNCC	4 cut(s)	4, 196, 197, 455
BmiI	GGNNCC	4 cut(s)	88, 198, 349, 456
BmrFI	CCNGG	1 cut(s)	415
BoxI	GACNNNNGTC	1 cut(s)	66
BplI	GAGNNNNNCTC	2 cut(s)	395, 427
BpmI	CTGGAG	1 cut(s)	244
BpuEI	CTTGAG	1 cut(s)	422
BsaI	GGTCTC	1 cut(s)	279
BsaJI	CCNNGG	1 cut(s)	337
Bsc4I	CCNNNNNNNGG	3 cut(s)	13, 274, 338
Bse1I	ACTGG	3 cut(s)	73, 261, 490
BseBI	CCWGG	1 cut(s)	415
BseDI	CCNNGG	1 cut(s)	337
BseGI	GGATG	2 cut(s)	240, 279
BseLI	CCNNNNNNNGG	3 cut(s)	13, 274, 338
BseMII	CTCAG	1 cut(s)	378
BseNI	ACTGG	3 cut(s)	73, 261, 490
BseRI	GAGGAG	3 cut(s)	354, 357, 400
BseSI	GKGCMC	1 cut(s)	200
BseXI	GCAGC	3 cut(s)	370, 478, 484
BshFI	GGCC	4 cut(s)	5, 198, 395, 432
BshNI	GGYRCC	2 cut(s)	86, 347
BsiHKAI	GWGCWC	1 cut(s)	408
BsiHKCI	CYCGRG	2 cut(s)	167, 269
BslFI	GGGAC	1 cut(s)	468
BslI	CCNNNNNNNGG	3 cut(s)	13, 274, 338
BsmAI	GTCTC	1 cut(s)	279
BsmFI	GGGAC	1 cut(s)	468
BsnI	GGCC	4 cut(s)	5, 198, 395, 432
Bso31I	GGTCTC	1 cut(s)	279
BsoBI	CYCGRG	2 cut(s)	167, 269
Bsp120I	GGGCCC	1 cut(s)	196
Bsp1286I	GDGCHC	2 cut(s)	200, 408
Bsp1407I	TGTACA	1 cut(s)	77
Bsp143I	GATC	2 cut(s)	111, 217
BspACI	CCGC	1 cut(s)	103
BspANI	GGCC	4 cut(s)	5, 198, 395, 432
BspCNI	CTCAG	1 cut(s)	379
BspLI	GGNNCC	4 cut(s)	88, 198, 349, 456
BspPI	GGATC	1 cut(s)	225
BspT107I	GGYRCC	2 cut(s)	86, 347
BspTNI	GGTCTC	1 cut(s)	279
BsrGI	TGTACA	1 cut(s)	77
BsrI	ACTGG	3 cut(s)	73, 261, 490
BssECI	CCNNGG	1 cut(s)	337
BssMI	GATC	2 cut(s)	111, 217
Bst2UI	CCWGG	1 cut(s)	415
BstAUI	TGTACA	1 cut(s)	77
BstC8I	GCNNGC	1 cut(s)	177
BstDEI	CTNAG	2 cut(s)	124, 387
BstENI	CCTNNNNNAGG	1 cut(s)	272
BstF5I	GGATG	2 cut(s)	240, 279
BstKTI	GATC	2 cut(s)	114, 220
BstMAI	GTCTC	1 cut(s)	279
BstMBI	GATC	2 cut(s)	111, 217
BstMWI	GCNNNNNNNGC	1 cut(s)	392
BstNI	CCWGG	1 cut(s)	415
BstPAI	GACNNNNGTC	1 cut(s)	66
BstSCI	CCNGG	1 cut(s)	413
BstSLI	GKGCMC	1 cut(s)	200
BstV1I	GCAGC	3 cut(s)	370, 478, 484
BstXI	CCANNNNNNTGG	1 cut(s)	515
BsuRI	GGCC	4 cut(s)	5, 198, 395, 432
BtsCI	GGATG	2 cut(s)	240, 279
BtsIMutI	CAGTG	2 cut(s)	80, 268
Cac8I	GCNNGC	1 cut(s)	177
Cfr13I	GGNCC	4 cut(s)	4, 196, 197, 455
CseI	GACGC	1 cut(s)	71
Csp6I	GTAC	4 cut(s)	78, 87, 164, 560
CviAII	CATG	4 cut(s)	91, 107, 134, 397
CviQI	GTAC	4 cut(s)	78, 87, 164, 560
DdeI	CTNAG	2 cut(s)	124, 387
DpnI	GATC	2 cut(s)	113, 219
DpnII	GATC	2 cut(s)	111, 217
Ecl136II	GAGCTC	1 cut(s)	406
Eco24I	GRGCYC	2 cut(s)	200, 408
Eco31I	GGTCTC	1 cut(s)	279
Eco47I	GGWCC	1 cut(s)	455
Eco53kI	GAGCTC	1 cut(s)	406
Eco88I	CYCGRG	2 cut(s)	167, 269
EcoICRI	GAGCTC	1 cut(s)	406
EcoNI	CCTNNNNNAGG	1 cut(s)	272
EcoO109I	RGGNCCY	2 cut(s)	197, 455
EcoRII	CCWGG	1 cut(s)	413
EcoT38I	GRGCYC	2 cut(s)	200, 408
FaeI	CATG	4 cut(s)	94, 110, 137, 400
FaiI	YATR	7 cut(s)	41, 92, 100, 108, 135, 303, 398
FaqI	GGGAC	1 cut(s)	468
FatI	CATG	4 cut(s)	90, 106, 133, 396
FblI	GTMKAC	1 cut(s)	247
Fnu4HI	GCNGC	3 cut(s)	384, 473, 492
FokI	GGATG	2 cut(s)	227, 266
FriOI	GRGCYC	2 cut(s)	200, 408
Fsp4HI	GCNGC	3 cut(s)	384, 473, 492
FspBI	CTAG	4 cut(s)	32, 380, 525, 569
GluI	GCNGC	3 cut(s)	384, 473, 492
GsuI	CTGGAG	1 cut(s)	244
HaeIII	GGCC	4 cut(s)	5, 198, 395, 432
HgaI	GACGC	1 cut(s)	71
Hin1II	CATG	4 cut(s)	94, 110, 137, 400
HindIII	AAGCTT	1 cut(s)	575
HinfI	GANTC	1 cut(s)	314
HphI	GGTGA	1 cut(s)	317
Hpy166II	GTNNAC	2 cut(s)	78, 248
Hpy188I	TCNGA	1 cut(s)	284
Hpy188III	TCNNGA	1 cut(s)	569
Hpy8I	GTNNAC	2 cut(s)	78, 248
Hpy99I	CGWCG	1 cut(s)	65
HpyAV	CCTTC	2 cut(s)	367, 385
HpyCH4V	TGCA	2 cut(s)	39, 179
HpyF10VI	GCNNNNNNNGC	1 cut(s)	392
HpyF3I	CTNAG	2 cut(s)	124, 387
Hsp92II	CATG	4 cut(s)	94, 110, 137, 400
KpnI	GGTACC	1 cut(s)	90
Kzo9I	GATC	2 cut(s)	111, 217
LmnI	GCTCC	1 cut(s)	533
Lsp1109I	GCAGC	3 cut(s)	370, 478, 484
MaeI	CTAG	4 cut(s)	32, 380, 525, 569
MaeIII	GTNAC	2 cut(s)	188, 547
MalI	GATC	2 cut(s)	113, 219
MboI	GATC	2 cut(s)	111, 217
MboII	GAAGA	3 cut(s)	319, 492, 513
MhlI	GDGCHC	2 cut(s)	200, 408
MluCI	AATT	3 cut(s)	9, 45, 554
MseI	TTAA	4 cut(s)	228, 255, 441, 580
MspR9I	CCNGG	1 cut(s)	415
MvaI	CCWGG	1 cut(s)	415
MwoI	GCNNNNNNNGC	1 cut(s)	392
NdeII	GATC	2 cut(s)	111, 217
NlaIII	CATG	4 cut(s)	94, 110, 137, 400
NlaIV	GGNNCC	4 cut(s)	88, 198, 349, 456
PaeR7I	CTCGAG	2 cut(s)	167, 269
PfeI	GAWTC	1 cut(s)	314
PfoI	TCCNGGA	1 cut(s)	413
PkrI	GCNGC	3 cut(s)	385, 474, 493
PpuMI	RGGWCCY	1 cut(s)	455
PshAI	GACNNNNGTC	1 cut(s)	66
Psp124BI	GAGCTC	1 cut(s)	408
Psp5II	RGGWCCY	1 cut(s)	455
Psp6I	CCWGG	1 cut(s)	413
PspGI	CCWGG	1 cut(s)	413
PspN4I	GGNNCC	4 cut(s)	88, 198, 349, 456
PspOMI	GGGCCC	1 cut(s)	196
PspPI	GGNCC	4 cut(s)	4, 196, 197, 455
PspPPI	RGGWCCY	1 cut(s)	455
PspXI	VCTCGAGB	2 cut(s)	167, 269
RsaI	GTAC	4 cut(s)	79, 88, 165, 561
RsaNI	GTAC	4 cut(s)	78, 87, 164, 560
SacI	GAGCTC	1 cut(s)	408
SaqAI	TTAA	4 cut(s)	228, 255, 441, 580
SatI	GCNGC	3 cut(s)	384, 473, 492
Sau3AI	GATC	2 cut(s)	111, 217
Sau96I	GGNCC	4 cut(s)	4, 196, 197, 455
ScrFI	CCNGG	1 cut(s)	415
SduI	GDGCHC	2 cut(s)	200, 408
Sfr274I	CTCGAG	2 cut(s)	167, 269
SinI	GGWCC	1 cut(s)	455
SlaI	CTCGAG	2 cut(s)	167, 269
SmlI	CTYRAG	3 cut(s)	167, 269, 401
SmoI	CTYRAG	3 cut(s)	167, 269, 401
Sse9I	AATT	3 cut(s)	9, 45, 554
SsiI	CCGC	1 cut(s)	103
SspMI	CTAG	4 cut(s)	32, 380, 525, 569
SstI	GAGCTC	1 cut(s)	408
StyD4I	CCNGG	1 cut(s)	413
TaqI	TCGA	4 cut(s)	60, 168, 270, 312
TasI	AATT	3 cut(s)	9, 45, 554
TatI	WGTACW	3 cut(s)	77, 163, 559
TfiI	GAWTC	1 cut(s)	314
Tru1I	TTAA	4 cut(s)	228, 255, 441, 580
Tru9I	TTAA	4 cut(s)	228, 255, 441, 580
TscAI	CASTG	2 cut(s)	80, 268
TseI	GCWGC	3 cut(s)	383, 472, 491
TspGWI	ACGGA	1 cut(s)	233
TspRI	CASTG	2 cut(s)	80, 268
VpaK11BI	GGWCC	1 cut(s)	455
XagI	CCTNNNNNAGG	1 cut(s)	272
XbaI	TCTAGA	1 cut(s)	568
XhoI	CTCGAG	2 cut(s)	167, 269
XmiI	GTMKAC	1 cut(s)	247
XspI	CTAG	4 cut(s)	32, 380, 525, 569

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.