Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000929

Physical Location & Seq

Genomic Coordinates Forward (+)

38440469 .. 38456881

Gene Structure 16413 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00314450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGCGAGATCGAATCGATTAGGGGTGGTGGGGCAAAGAGGATGTGCTTTTGTGAGTTATGCAACAAGAGAAGGTGCAGAGGAGGAACTTTGTAATAAGCTGGTGGTGAAGGGTTTGAGATTGAAGTTGGCCTGGGGTAGACCTCAGGCACCGCGAGTGCAGGATGAGGGATCTAATAGACAGTCGGAGGCGGCTCATTTTGGGTGGTTGCCTCAAGGAGGCGTGCCCCAAAGAGACCAATACACCAACAAACAACGCCCTTCGATTAGCAAATCGGAGAAGAGGCTACGATCTGAAACCTTTGGTCTAGGATCTGAAGCTCTTGTATGTAAAATTAGAGATTTTAGTAGATGTATACTTTCTATTAGGCGTTCTAAAAAACAAGCAGATGATGTATTTCCTGTGATTGATGAGATTCAAGTGCTCTGCTTGCAGACCTATCAAACACCGAGACACAATTACATGCATATAAATGCGTGTAATCACACCCCCACACTTGAACTTTGCTTGTCCTCAAGCAAACTAAATGAAATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000387 GO:0000398 GO:0000974 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008380 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0017069 GO:0017070 GO:0022607 GO:0022613 GO:0022618 GO:0032991 GO:0034622 GO:0034641 GO:0036002 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0051704 GO:0051707 GO:0065003 GO:0071006 GO:0071007 GO:0071012 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:0098542 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1 Torus

Protein Analysis

178

Amino Acids

20.12

Weight (kDa)

9.42

Isoelectric Point (pI)

72.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000929)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07360 AT2G29580 AT5G04210 AT5G07060 AT5G07060
fragaria_vesca	FvH4_4g11590 FvH4_4g11590 FvH4_4g11590 FvH4_4g11590 FvH4_4g11590 FvH4_4g36530 FvH4_4g36530 FvH4_7g07370
malus_domestica	MD01G1110000.v1.1 MD07G1175800.v1.1 MD16G1006600.v1.1
prunus_persica	Prupe.2G214800_v2.0.a1 Prupe.8G143100_v2.0.a1 Prupe.8G143100_v2.0.a1 Prupe.8G143100_v2.0.a1
pyrus_communis	pycom01g13690 pycom07g17000 pycom16g00630
rosa_chinensis	RchiOBHm_Chr1g0337351 RchiOBHm_Chr4g0408701 RchiOBHm_Chr4g0446281
rosa_laevigata	RLG00000005673 RLG00000008640 RLG00000029280 RLG00000029283
rosa_multiflora	Rmu_co8341103.1_g000001 Rmu_co8350441.1_g000001 Rmu_co8408813.1_g000001 Rmu_co8519167.1_g000003 Rmu_co8522047.1_g000002 Rmu_sc0002266.1_g000007 Rmu_sc0003060.1_g000002 Rmu_sc0005878.1_g000023 Rmu_sc0021927.1_g000001
rosa_roxburghii	Rroxscaffold_4G00314450 Rroxscaffold_4G00314490 Rroxscaffold_5G00353060 Rroxscaffold_5G00386720
rosa_rugosa	Rorug01G0134600.1 Rorug01G0134800.1 Rorug04G0086900 Rorug04G0369600 Rorug04G0369600
rosa_samantha	Rh1AG153600 Rh1BG122900 Rh1BG123100 Rh1CG144600 Rh1DG161300 Rh1DG161500 Rh4AG431500 Rh4BG148400 Rh4BG440900 Rh4CG159100 Rh4CG458200 Rh4DG144000 Rh4DG439400
rosa_wichuraiana	Rw1G012580 Rw4G012370 Rw4G036850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	148
AccI	GTMKAC	2 cut(s)	139, 355
AccII	CGCG	1 cut(s)	154
AciI	CCGC	2 cut(s)	152, 191
AclWI	GGATC	2 cut(s)	178, 319
AcuI	CTGAAG	1 cut(s)	336
AfiI	CCNNNNNNNGG	1 cut(s)	218
AgsI	TTSAA	3 cut(s)	124, 419, 500
AjnI	CCWGG	1 cut(s)	131
AluBI	AGCT	2 cut(s)	100, 320
AluI	AGCT	2 cut(s)	100, 320
Alw21I	GWGCWC	1 cut(s)	426
Alw26I	GTCTC	2 cut(s)	228, 445
AlwI	GGATC	2 cut(s)	178, 319
AoxI	GGCC	1 cut(s)	129
AsuHPI	GGTGA	1 cut(s)	118
AxyI	CCTNAGG	1 cut(s)	144
BaeGI	GKGCMC	1 cut(s)	228
BanI	GGYRCC	1 cut(s)	148
Bbv12I	GWGCWC	1 cut(s)	426
BciT130I	CCWGG	1 cut(s)	133
BcoDI	GTCTC	2 cut(s)	228, 445
BfaI	CTAG	1 cut(s)	308
BisI	GCNGC	1 cut(s)	192
BlsI	GCNGC	1 cut(s)	193
Bme1390I	CCNGG	1 cut(s)	133
BmiI	GGNNCC	1 cut(s)	150
BmrFI	CCNGG	1 cut(s)	133
BpuEI	CTTGAG	2 cut(s)	198, 499
Bsa29I	ATCGAT	1 cut(s)	16
BsaI	GGTCTC	1 cut(s)	228
BsaJI	CCNNGG	1 cut(s)	132
Bsc4I	CCNNNNNNNGG	1 cut(s)	218
Bse21I	CCTNAGG	1 cut(s)	144
BseBI	CCWGG	1 cut(s)	133
BseCI	ATCGAT	1 cut(s)	16
BseDI	CCNNGG	1 cut(s)	132
BseGI	GGATG	2 cut(s)	47, 169
BseLI	CCNNNNNNNGG	1 cut(s)	218
BseMII	CTCAG	1 cut(s)	158
BseRI	GAGGAG	1 cut(s)	95
BseSI	GKGCMC	1 cut(s)	228
BsgI	GTGCAG	2 cut(s)	96, 179
Bsh1236I	CGCG	1 cut(s)	154
BshFI	GGCC	1 cut(s)	131
BshNI	GGYRCC	1 cut(s)	148
BshVI	ATCGAT	1 cut(s)	16
BsiHKAI	GWGCWC	1 cut(s)	426
BslI	CCNNNNNNNGG	1 cut(s)	218
BsmAI	GTCTC	2 cut(s)	228, 445
BsnI	GGCC	1 cut(s)	131
Bso31I	GGTCTC	1 cut(s)	228
Bsp1286I	GDGCHC	2 cut(s)	228, 426
Bsp143I	GATC	4 cut(s)	8, 170, 290, 311
BspACI	CCGC	2 cut(s)	152, 191
BspANI	GGCC	1 cut(s)	131
BspCNI	CTCAG	1 cut(s)	157
BspDI	ATCGAT	1 cut(s)	16
BspFNI	CGCG	1 cut(s)	154
BspLI	GGNNCC	1 cut(s)	150
BspPI	GGATC	2 cut(s)	178, 319
BspT107I	GGYRCC	1 cut(s)	148
BspTNI	GGTCTC	1 cut(s)	228
BssECI	CCNNGG	1 cut(s)	132
BssMI	GATC	4 cut(s)	8, 170, 290, 311
BssNAI	GTATAC	1 cut(s)	356
Bst1107I	GTATAC	1 cut(s)	356
Bst2UI	CCWGG	1 cut(s)	133
Bst4CI	ACNGT	1 cut(s)	183
Bst6I	CTCTTC	1 cut(s)	275
BstC8I	GCNNGC	2 cut(s)	224, 431
BstDEI	CTNAG	1 cut(s)	144
BstENI	CCTNNNNNAGG	1 cut(s)	216
BstF5I	GGATG	2 cut(s)	47, 169
BstFNI	CGCG	1 cut(s)	154
BstKTI	GATC	4 cut(s)	11, 173, 293, 314
BstMAI	GTCTC	2 cut(s)	228, 445
BstMBI	GATC	4 cut(s)	8, 170, 290, 311
BstMWI	GCNNNNNNNGC	1 cut(s)	430
BstNI	CCWGG	1 cut(s)	133
BstNSI	RCATGY	1 cut(s)	466
BstSCI	CCNGG	1 cut(s)	131
BstSLI	GKGCMC	1 cut(s)	228
BstUI	CGCG	1 cut(s)	154
BstX2I	RGATCY	2 cut(s)	170, 311
BstYI	RGATCY	2 cut(s)	170, 311
BstZ17I	GTATAC	1 cut(s)	356
Bsu15I	ATCGAT	1 cut(s)	16
Bsu36I	CCTNAGG	1 cut(s)	144
BsuRI	GGCC	1 cut(s)	131
BsuTUI	ATCGAT	1 cut(s)	16
BtsCI	GGATG	2 cut(s)	47, 169
Cac8I	GCNNGC	2 cut(s)	224, 431
ClaI	ATCGAT	1 cut(s)	16
CviAII	CATG	1 cut(s)	463
CviJI	RGCY	5 cut(s)	100, 131, 194, 286, 320
CviKI_1	RGCY	5 cut(s)	100, 131, 194, 286, 320
DdeI	CTNAG	1 cut(s)	144
DpnI	GATC	4 cut(s)	10, 172, 292, 313
DpnII	GATC	4 cut(s)	8, 170, 290, 311
Eam1104I	CTCTTC	1 cut(s)	275
EarI	CTCTTC	1 cut(s)	275
Eco31I	GGTCTC	1 cut(s)	228
Eco57I	CTGAAG	1 cut(s)	336
Eco81I	CCTNAGG	1 cut(s)	144
EcoNI	CCTNNNNNAGG	1 cut(s)	216
EcoRII	CCWGG	1 cut(s)	131
EcoT22I	ATGCAT	1 cut(s)	468
FaeI	CATG	1 cut(s)	466
FaiI	YATR	7 cut(s)	60, 328, 356, 464, 468, 470, 535
FatI	CATG	1 cut(s)	462
FblI	GTMKAC	2 cut(s)	139, 355
Fnu4HI	GCNGC	1 cut(s)	192
FokI	GGATG	2 cut(s)	54, 176
Fsp4HI	GCNGC	1 cut(s)	192
FspBI	CTAG	1 cut(s)	308
GluI	GCNGC	1 cut(s)	192
HaeIII	GGCC	1 cut(s)	131
Hin1II	CATG	1 cut(s)	466
HinfI	GANTC	2 cut(s)	13, 415
HphI	GGTGA	1 cut(s)	118
Hpy166II	GTNNAC	2 cut(s)	140, 356
Hpy188I	TCNGA	4 cut(s)	187, 277, 295, 316
Hpy8I	GTNNAC	2 cut(s)	140, 356
HpyAV	CCTTC	3 cut(s)	65, 103, 270
HpyCH4III	ACNGT	1 cut(s)	183
HpyCH4V	TGCA	5 cut(s)	62, 77, 160, 433, 466
HpyF10VI	GCNNNNNNNGC	1 cut(s)	430
HpyF3I	CTNAG	1 cut(s)	144
Hsp92II	CATG	1 cut(s)	466
Kzo9I	GATC	4 cut(s)	8, 170, 290, 311
LpnPI	CCDG	6 cut(s)	86, 118, 131, 145, 146, 414
MaeI	CTAG	1 cut(s)	308
MalI	GATC	4 cut(s)	10, 172, 292, 313
MboI	GATC	4 cut(s)	8, 170, 290, 311
MboII	GAAGA	1 cut(s)	292
MflI	RGATCY	2 cut(s)	170, 311
MhlI	GDGCHC	2 cut(s)	228, 426
MluCI	AATT	2 cut(s)	333, 457
MmeI	TCCRAC	1 cut(s)	165
Mph1103I	ATGCAT	1 cut(s)	468
MslI	CAYNNNNRTG	1 cut(s)	471
MspR9I	CCNGG	1 cut(s)	133
MvaI	CCWGG	1 cut(s)	133
MvnI	CGCG	1 cut(s)	154
MwoI	GCNNNNNNNGC	1 cut(s)	430
NdeII	GATC	4 cut(s)	8, 170, 290, 311
NlaIII	CATG	1 cut(s)	466
NlaIV	GGNNCC	1 cut(s)	150
NsiI	ATGCAT	1 cut(s)	468
NspI	RCATGY	1 cut(s)	466
PfeI	GAWTC	2 cut(s)	13, 415
PkrI	GCNGC	1 cut(s)	193
Psp6I	CCWGG	1 cut(s)	131
PspGI	CCWGG	1 cut(s)	131
PspN4I	GGNNCC	1 cut(s)	150
PsuI	RGATCY	2 cut(s)	170, 311
RseI	CAYNNNNRTG	1 cut(s)	471
SatI	GCNGC	1 cut(s)	192
Sau3AI	GATC	4 cut(s)	8, 170, 290, 311
ScrFI	CCNGG	1 cut(s)	133
SduI	GDGCHC	2 cut(s)	228, 426
SetI	ASST	6 cut(s)	76, 102, 145, 302, 322, 440
SmiMI	CAYNNNNRTG	1 cut(s)	471
SmlI	CTYRAG	2 cut(s)	213, 514
SmoI	CTYRAG	2 cut(s)	213, 514
Sse9I	AATT	2 cut(s)	333, 457
SsiI	CCGC	2 cut(s)	152, 191
SspMI	CTAG	1 cut(s)	308
StyD4I	CCNGG	1 cut(s)	131
TaaI	ACNGT	1 cut(s)	183
TaqI	TCGA	3 cut(s)	11, 16, 263
TasI	AATT	2 cut(s)	333, 457
TauI	GCSGC	1 cut(s)	194
TfiI	GAWTC	2 cut(s)	13, 415
XagI	CCTNNNNNAGG	1 cut(s)	216
XceI	RCATGY	1 cut(s)	466
XmiI	GTMKAC	2 cut(s)	139, 355
XspI	CTAG	1 cut(s)	308
Zsp2I	ATGCAT	1 cut(s)	468

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.