Rmu_co8522047.1_g000002

zinc finger CCCH domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8522047.1
Physical Location & Seq
Reverse (-)
6765 .. 7802
1038 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8522047.1_g000002.1.cds

Sequence Viewer

Length: 1038 bp
atgacgcgtgccgatttcgacaaagagtgctacacctgcagtcgtcccttcaccgttttccggtggaaacccggccacgacgcccgctacaagaagacggagatttgccagacctgcagtaagttgcaaaatgtgtgtcaggtctgcgtcttagatctccgaaccggcttgccggttcaggtcctgaacactgctcttggcgtcaacccaaacgacgccgtcctgcctaagagcgacgtcaaccgggagtatttcgctgaggaacatgaccgtagggttagggcttctggtattatcgatccgtacgaacaagagtacggaaaatcaaggacaagtgacactatcctcaagcttcagaggacgacaccgtattaccagaggaaccgagcgcatgtgtgtagtttttacgctaagggccggtgcactagaggagctgagtgtccttaccggcatgagatgccaataactggagagttgtcaaaccaaaatatcaaggaccggttccatggggtcaacgatccggtggcactgaagctgcttcgaaaggccggagagatggggtctttggagcctcctgaggacgagagtattaggactttatatgtggggggtgtggttgatggaagagtttcggagcaggacttgagggattgcttttgggttcatggcgagatcgaatcgattagggtggtggggcaaagaggatgtgcttttgtgacttatgtaacgagagaaggtgcggagaaggctgcggaggaactttgtaataagctggtggtgaagggtttgagattgaagttggcatggggtagacctcaggcgccacgagtgcaggatgagggagctagtaggcagccggctgcgtcaggggcacattgtgggtggttgcctcaagtaggcgttccccaacaagaccaatcagcagcacagcaatactactacatgccacgtccaccttcgcaagggggaacaacattttatccatcaatggatcctcaaagaatgggcacccttgttggcggacctaaagctgagtaa

Protein Analysis

345

Amino Acids

38.75

Weight (kDa)

8.61

Isoelectric Point (pI)

47.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 44
AatII GACGTC 1 cut(s) 240
Acc36I ACCTGC 2 cut(s) 44, 122
AccB1I GGYRCC 2 cut(s) 820, 1007
AccB7I CCANNNNNTGG 1 cut(s) 467
AccI GTMKAC 1 cut(s) 811
AccII CGCG 1 cut(s) 7
AciI CCGC 4 cut(s) 85, 740, 752, 1020
AclWI GGATC 4 cut(s) 293, 512, 986, 999
AcoI YGGCCR 1 cut(s) 73
AcuI CTGAAG 2 cut(s) 338, 551
AcyI GRCGYC 5 cut(s) 81, 201, 216, 237, 821
AdeI CACNNNGTG 1 cut(s) 878
AfaI GTAC 2 cut(s) 305, 317
AfiI CCNNNNNNNGG 4 cut(s) 60, 467, 896, 962
AflIII ACRYGT 1 cut(s) 5
AgeI ACCGGT 1 cut(s) 498
AgsI TTSAA 1 cut(s) 796
AjiI CACGTC 1 cut(s) 950
AluBI AGCT 6 cut(s) 352, 434, 535, 772, 845, 1031
AluI AGCT 6 cut(s) 352, 434, 535, 772, 845, 1031
Alw21I GWGCWC 1 cut(s) 425
Alw44I GTGCAC 1 cut(s) 421
AlwI GGATC 4 cut(s) 293, 512, 986, 999
AlwNI CAGNNNCTG 1 cut(s) 184
AoxI GGCC 3 cut(s) 73, 415, 546
ApaLI GTGCAC 1 cut(s) 421
ApeKI GCWGC 5 cut(s) 535, 749, 853, 860, 923
ArsI GACNNNNNNTTYG 2 cut(s) 121, 153
AsiGI ACCGGT 1 cut(s) 498
Asp700I GAANNNNTTC 1 cut(s) 628
AspLEI GCGC 2 cut(s) 391, 823
AspS9I GGNCC 4 cut(s) 181, 415, 496, 1022
AsuC2I CCSGG 2 cut(s) 72, 245
AsuHPI GGTGA 2 cut(s) 43, 790
AsuII TTCGAA 1 cut(s) 541
AvaII GGWCC 3 cut(s) 181, 496, 1022
AxyI CCTNAGG 2 cut(s) 576, 816
BaeGI GKGCMC 3 cut(s) 425, 874, 1010
BamHI GGATCC 1 cut(s) 991
BanI GGYRCC 2 cut(s) 820, 1007
BauI CACGAG 1 cut(s) 825
BbsI GAAGAC 1 cut(s) 101
Bbv12I GWGCWC 1 cut(s) 425
BbvCI CCTCAGC 1 cut(s) 258
BbvI GCAGC 5 cut(s) 522, 736, 847, 865, 935
BccI CCATC 3 cut(s) 550, 614, 991
BceAI ACGGC 1 cut(s) 203
BcnI CCSGG 2 cut(s) 72, 245
BfaI CTAG 2 cut(s) 426, 846
BfmI CTRYAG 2 cut(s) 37, 115
BfoI RGCGCY 1 cut(s) 824
BfuAI ACCTGC 2 cut(s) 44, 122
BglII AGATCT 1 cut(s) 154
BisI GCNGC 5 cut(s) 536, 750, 854, 861, 924
BlsI GCNGC 5 cut(s) 537, 751, 855, 862, 925
Bme1390I CCNGG 2 cut(s) 72, 245
Bme18I GGWCC 3 cut(s) 181, 496, 1022
BmgBI CACGTC 1 cut(s) 950
BmgT120I GGNCC 4 cut(s) 181, 415, 496, 1022
BmiI GGNNCC 6 cut(s) 383, 503, 570, 822, 993, 1009
BmrFI CCNGG 2 cut(s) 72, 245
BmsI GCATC 1 cut(s) 447
BpiI GAAGAC 1 cut(s) 101
BpmI CTGGAG 1 cut(s) 489
Bpu10I CCTNAGC 2 cut(s) 258, 411
Bpu14I TTCGAA 1 cut(s) 541
BpuEI CTTGAG 3 cut(s) 332, 664, 876
BpuMI CCSGG 2 cut(s) 72, 245
Bsa29I ATCGAT 2 cut(s) 297, 680
BsaHI GRCGYC 5 cut(s) 81, 201, 216, 237, 821
BsaJI CCNNGG 1 cut(s) 505
BsaWI WCCGGW 3 cut(s) 60, 498, 520
Bsc4I CCNNNNNNNGG 4 cut(s) 60, 467, 896, 962
Bse118I RCCGGY 6 cut(s) 164, 172, 417, 447, 498, 856
Bse1I ACTGG 1 cut(s) 472
Bse21I CCTNAGG 2 cut(s) 576, 816
BseCI ATCGAT 2 cut(s) 297, 680
BseDI CCNNGG 1 cut(s) 505
BseGI GGATG 2 cut(s) 710, 841
BseLI CCNNNNNNNGG 4 cut(s) 60, 467, 896, 962
BseMII CTCAG 5 cut(s) 249, 426, 567, 830, 1023
BseNI ACTGG 1 cut(s) 472
BseRI GAGGAG 1 cut(s) 444
BseSI GKGCMC 3 cut(s) 425, 874, 1010
BseXI GCAGC 5 cut(s) 522, 736, 847, 865, 935
BsgI GTGCAG 1 cut(s) 851
Bsh1236I CGCG 1 cut(s) 7
BshFI GGCC 3 cut(s) 75, 417, 548
BshNI GGYRCC 2 cut(s) 820, 1007
BshTI ACCGGT 1 cut(s) 498
BshVI ATCGAT 2 cut(s) 297, 680
BsiHKAI GWGCWC 1 cut(s) 425
BsiWI CGTACG 1 cut(s) 303
BslFI GGGAC 1 cut(s) 30
BslI CCNNNNNNNGG 4 cut(s) 60, 467, 896, 962
BsmFI GGGAC 1 cut(s) 30
BsnI GGCC 3 cut(s) 75, 417, 548
Bsp119I TTCGAA 1 cut(s) 541
Bsp1286I GDGCHC 3 cut(s) 425, 874, 1010
Bsp143I GATC 5 cut(s) 154, 298, 517, 672, 991
Bsp19I CCATGG 1 cut(s) 505
BspACI CCGC 4 cut(s) 85, 740, 752, 1020
BspANI GGCC 3 cut(s) 75, 417, 548
BspCNI CTCAG 5 cut(s) 250, 427, 568, 829, 1024
BspDI ATCGAT 2 cut(s) 297, 680
BspFNI CGCG 1 cut(s) 7
BspLI GGNNCC 6 cut(s) 383, 503, 570, 822, 993, 1009
BspMAI CTGCAG 2 cut(s) 41, 119
BspMI ACCTGC 2 cut(s) 44, 122
BspPI GGATC 4 cut(s) 293, 512, 986, 999
BspT104I TTCGAA 1 cut(s) 541
BspT107I GGYRCC 2 cut(s) 820, 1007
BsrFI RCCGGY 6 cut(s) 164, 172, 417, 447, 498, 856
BsrI ACTGG 1 cut(s) 472
BssAI RCCGGY 6 cut(s) 164, 172, 417, 447, 498, 856
BssECI CCNNGG 1 cut(s) 505
BssMI GATC 5 cut(s) 154, 298, 517, 672, 991
BssNI GRCGYC 5 cut(s) 81, 201, 216, 237, 821
BssSI CACGAG 1 cut(s) 825
BssT1I CCWWGG 1 cut(s) 505
Bst2BI CACGAG 1 cut(s) 825
Bst4CI ACNGT 3 cut(s) 55, 272, 369
Bst6I CTCTTC 1 cut(s) 619
BstACI GRCGYC 5 cut(s) 81, 201, 216, 237, 821
BstAPI GCANNNNNTGC 1 cut(s) 457
BstBI TTCGAA 1 cut(s) 541
BstC8I GCNNGC 4 cut(s) 9, 85, 170, 858
BstDEI CTNAG 8 cut(s) 151, 228, 258, 411, 435, 576, 816, 1032
BstDSI CCRYGG 1 cut(s) 505
BstENI CCTNNNNNAGG 2 cut(s) 894, 960
BstF5I GGATG 2 cut(s) 710, 841
BstFNI CGCG 1 cut(s) 7
BstH2I RGCGCY 1 cut(s) 824
BstHHI GCGC 2 cut(s) 391, 823
BstKTI GATC 5 cut(s) 157, 301, 520, 675, 994
BstMBI GATC 5 cut(s) 154, 298, 517, 672, 991
BstMWI GCNNNNNNNGC 6 cut(s) 36, 114, 457, 746, 829, 869
BstNSI RCATGY 2 cut(s) 395, 946
BstSCI CCNGG 2 cut(s) 70, 243
BstSFI CTRYAG 2 cut(s) 37, 115
BstSLI GKGCMC 3 cut(s) 425, 874, 1010
BstUI CGCG 1 cut(s) 7
BstV1I GCAGC 5 cut(s) 522, 736, 847, 865, 935
BstV2I GAAGAC 1 cut(s) 101
BstX2I RGATCY 2 cut(s) 154, 991
BstYI RGATCY 2 cut(s) 154, 991
Bsu15I ATCGAT 2 cut(s) 297, 680
Bsu36I CCTNAGG 2 cut(s) 576, 816
BsuRI GGCC 3 cut(s) 75, 417, 548
BsuTUI ATCGAT 2 cut(s) 297, 680
BtgI CCRYGG 1 cut(s) 505
BtrI CACGTC 1 cut(s) 950
BtsCI GGATG 2 cut(s) 710, 841
BtsI GCAGTG 1 cut(s) 189
BtsIMutI CAGTG 2 cut(s) 189, 527
BveI ACCTGC 2 cut(s) 44, 122
Cac8I GCNNGC 4 cut(s) 9, 85, 170, 858
CaiI CAGNNNCTG 1 cut(s) 184
CfoI GCGC 2 cut(s) 391, 823
Cfr10I RCCGGY 6 cut(s) 164, 172, 417, 447, 498, 856
Cfr13I GGNCC 4 cut(s) 181, 415, 496, 1022
ClaI ATCGAT 2 cut(s) 297, 680
CseI GACGC 6 cut(s) 13, 89, 136, 190, 224, 852
Csp6I GTAC 2 cut(s) 304, 316
CspAI ACCGGT 1 cut(s) 498
CviAII CATG 7 cut(s) 266, 392, 452, 506, 665, 804, 943
CviQI GTAC 2 cut(s) 304, 316
DdeI CTNAG 8 cut(s) 151, 228, 258, 411, 435, 576, 816, 1032
DinI GGCGCC 1 cut(s) 822
DpnI GATC 5 cut(s) 156, 300, 519, 674, 993
DpnII GATC 5 cut(s) 154, 298, 517, 672, 991
DraIII CACNNNGTG 1 cut(s) 878
EaeI YGGCCR 1 cut(s) 73
Eam1104I CTCTTC 1 cut(s) 619
EarI CTCTTC 1 cut(s) 619
EciI GGCGGA 1 cut(s) 1035
Eco130I CCWWGG 1 cut(s) 505
Eco47I GGWCC 3 cut(s) 181, 496, 1022
Eco57I CTGAAG 2 cut(s) 338, 551
Eco81I CCTNAGG 2 cut(s) 576, 816
EcoNI CCTNNNNNAGG 2 cut(s) 894, 960
EcoO109I RGGNCCY 1 cut(s) 181
EcoT14I CCWWGG 1 cut(s) 505
EgeI GGCGCC 1 cut(s) 822
EheI GGCGCC 1 cut(s) 822
ErhI CCWWGG 1 cut(s) 505
FaeI CATG 7 cut(s) 269, 395, 455, 509, 668, 807, 946
FaqI GGGAC 1 cut(s) 30
FatI CATG 7 cut(s) 265, 391, 451, 505, 664, 803, 942
FauI CCCGC 1 cut(s) 92
FblI GTMKAC 1 cut(s) 811
Fnu4HI GCNGC 5 cut(s) 536, 750, 854, 861, 924
FokI GGATG 2 cut(s) 717, 848
Fsp4HI GCNGC 5 cut(s) 536, 750, 854, 861, 924
FspBI CTAG 2 cut(s) 426, 846
GlaI GCGC 2 cut(s) 390, 822
GluI GCNGC 5 cut(s) 536, 750, 854, 861, 924
GsuI CTGGAG 1 cut(s) 489
HaeII RGCGCY 1 cut(s) 824
HaeIII GGCC 3 cut(s) 75, 417, 548
HgaI GACGC 6 cut(s) 13, 89, 136, 190, 224, 852
HhaI GCGC 2 cut(s) 391, 823
Hin1I GRCGYC 5 cut(s) 81, 201, 216, 237, 821
Hin1II CATG 7 cut(s) 269, 395, 455, 509, 668, 807, 946
Hin6I GCGC 2 cut(s) 389, 821
HinP1I GCGC 2 cut(s) 389, 821
HincII GTYRAC 3 cut(s) 205, 241, 514
HindII GTYRAC 3 cut(s) 205, 241, 514
HindIII AAGCTT 1 cut(s) 350
HinfI GANTC 1 cut(s) 677
HphI GGTGA 2 cut(s) 43, 790
Hpy166II GTNNAC 6 cut(s) 205, 241, 423, 514, 812, 953
Hpy188I TCNGA 3 cut(s) 161, 357, 634
Hpy188III TCNNGA 2 cut(s) 184, 575
Hpy8I GTNNAC 6 cut(s) 205, 241, 423, 514, 812, 953
Hpy99I CGWCG 3 cut(s) 83, 218, 239
HpyAV CCTTC 5 cut(s) 58, 728, 739, 775, 966
HpyCH4III ACNGT 3 cut(s) 55, 272, 369
HpyCH4IV ACGT 2 cut(s) 237, 949
HpyCH4V TGCA 5 cut(s) 39, 117, 127, 423, 832
HpyF10VI GCNNNNNNNGC 6 cut(s) 36, 114, 457, 746, 829, 869
HpyF3I CTNAG 8 cut(s) 151, 228, 258, 411, 435, 576, 816, 1032
HpySE526I ACGT 2 cut(s) 237, 949
Hsp92I GRCGYC 5 cut(s) 81, 201, 216, 237, 821
Hsp92II CATG 7 cut(s) 269, 395, 455, 509, 668, 807, 946
HspAI GCGC 2 cut(s) 389, 821
KasI GGCGCC 1 cut(s) 820
KroI GCCGGC 1 cut(s) 856
KroNI GCCGGC 1 cut(s) 858
Kzo9I GATC 5 cut(s) 154, 298, 517, 672, 991
LmnI GCTCC 4 cut(s) 431, 568, 634, 842
Lsp1109I GCAGC 5 cut(s) 522, 736, 847, 865, 935
LweI GCATC 1 cut(s) 447
MaeI CTAG 2 cut(s) 426, 846
MaeII ACGT 2 cut(s) 237, 949
MaeIII GTNAC 3 cut(s) 335, 715, 724
MalI GATC 5 cut(s) 156, 300, 519, 674, 993
MboI GATC 5 cut(s) 154, 298, 517, 672, 991
MboII GAAGA 2 cut(s) 106, 636
MflI RGATCY 2 cut(s) 154, 991
MhlI GDGCHC 3 cut(s) 425, 874, 1010
MluI ACGCGT 1 cut(s) 5
Mly113I GGCGCC 1 cut(s) 821
MroNI GCCGGC 1 cut(s) 856
MroXI GAANNNNTTC 1 cut(s) 628
MspR9I CCNGG 2 cut(s) 72, 245
MvnI CGCG 1 cut(s) 7
MwoI GCNNNNNNNGC 6 cut(s) 36, 114, 457, 746, 829, 869
NaeI GCCGGC 1 cut(s) 858
NarI GGCGCC 1 cut(s) 821
NciI CCSGG 2 cut(s) 72, 245
NcoI CCATGG 1 cut(s) 505
NdeII GATC 5 cut(s) 154, 298, 517, 672, 991
NgoMIV GCCGGC 1 cut(s) 856
NlaIII CATG 7 cut(s) 269, 395, 455, 509, 668, 807, 946
NlaIV GGNNCC 6 cut(s) 383, 503, 570, 822, 993, 1009
NmuCI GTSAC 2 cut(s) 335, 715
NspI RCATGY 2 cut(s) 395, 946
NspV TTCGAA 1 cut(s) 541
PaqCI CACCTGC 1 cut(s) 44
PcsI WCGNNNNNNNCGW 1 cut(s) 303
PdiI GCCGGC 1 cut(s) 858
PdmI GAANNNNTTC 1 cut(s) 628
PfeI GAWTC 1 cut(s) 677
Pfl23II CGTACG 1 cut(s) 303
PflFI GACNNNGTC 1 cut(s) 218
PflMI CCANNNNNTGG 1 cut(s) 467
PinAI ACCGGT 1 cut(s) 498
PkrI GCNGC 5 cut(s) 537, 751, 855, 862, 925
PluTI GGCGCC 1 cut(s) 824
PpuMI RGGWCCY 1 cut(s) 181
Psp5II RGGWCCY 1 cut(s) 181
PspLI CGTACG 1 cut(s) 303
PspN4I GGNNCC 6 cut(s) 383, 503, 570, 822, 993, 1009
PspPI GGNCC 4 cut(s) 181, 415, 496, 1022
PspPPI RGGWCCY 1 cut(s) 181
PstI CTGCAG 2 cut(s) 41, 119
PstNI CAGNNNCTG 1 cut(s) 184
PsuI RGATCY 2 cut(s) 154, 991
PsyI GACNNNGTC 1 cut(s) 218
RsaI GTAC 2 cut(s) 305, 317
RsaNI GTAC 2 cut(s) 304, 316
SatI GCNGC 5 cut(s) 536, 750, 854, 861, 924
Sau3AI GATC 5 cut(s) 154, 298, 517, 672, 991
Sau96I GGNCC 4 cut(s) 181, 415, 496, 1022
ScrFI CCNGG 2 cut(s) 72, 245
SduI GDGCHC 3 cut(s) 425, 874, 1010
SfaNI GCATC 1 cut(s) 447
SfcI CTRYAG 2 cut(s) 37, 115
SfoI GGCGCC 1 cut(s) 822
SfuI TTCGAA 1 cut(s) 541
SinI GGWCC 3 cut(s) 181, 496, 1022
SmlI CTYRAG 3 cut(s) 347, 643, 891
SmoI CTYRAG 3 cut(s) 347, 643, 891
SsiI CCGC 4 cut(s) 85, 740, 752, 1020
SspDI GGCGCC 1 cut(s) 820
SspMI CTAG 2 cut(s) 426, 846
StyD4I CCNGG 2 cut(s) 70, 243
StyI CCWWGG 1 cut(s) 505
TaaI ACNGT 3 cut(s) 55, 272, 369
TaiI ACGT 2 cut(s) 240, 952
TaqI TCGA 5 cut(s) 18, 297, 541, 675, 680
TfiI GAWTC 1 cut(s) 677
TscAI CASTG 2 cut(s) 196, 534
TseFI GTSAC 2 cut(s) 335, 715
TseI GCWGC 5 cut(s) 535, 749, 853, 860, 923
Tsp45I GTSAC 2 cut(s) 335, 715
TspDTI ATGAA 1 cut(s) 653
TspGWI ACGGA 3 cut(s) 113, 291, 333
TspRI CASTG 2 cut(s) 196, 534
Tth111I GACNNNGTC 1 cut(s) 218
Van91I CCANNNNNTGG 1 cut(s) 467
VneI GTGCAC 1 cut(s) 421
VpaK11BI GGWCC 3 cut(s) 181, 496, 1022
XagI CCTNNNNNAGG 2 cut(s) 894, 960
XceI RCATGY 2 cut(s) 395, 946
XmiI GTMKAC 1 cut(s) 811
XmnI GAANNNNTTC 1 cut(s) 628
XspI CTAG 2 cut(s) 426, 846
ZraI GACGTC 1 cut(s) 238
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.