Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003060.1

Orthogroup ID

OG0000929

Physical Location & Seq

Genomic Coordinates Forward (+)

6933 .. 7304

Gene Structure 372 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003060.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

atggggtctttggtgcctctggaggacgaaagcattcggactttgtatgtggggtttgtggttgatgggagagtttcggagcaggacttgagggattgcttttgggttcatggcgagatcgaatcgattagggtggtggggcaaagaggatgtgcttttgtgagttatgcaacaagagaaggtgcagaggaggaactttgtaataagctggtggtgaagggtttgagattgaagttggcctggggtagacctcaggcaccgcgagtgcaggatgagggatctaatagacagtcggaggcggctcattttgggtggttgcctcaaggaggcgtgccccaaagagaccaatgtgcagtacaacaatactactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000387 GO:0000398 GO:0000974 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008380 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0017069 GO:0017070 GO:0022607 GO:0022613 GO:0022618 GO:0032991 GO:0034622 GO:0034641 GO:0036002 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0051704 GO:0051707 GO:0065003 GO:0071006 GO:0071007 GO:0071012 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:0098542 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1 Torus

Protein Analysis

123

Amino Acids

13.83

Weight (kDa)

5.38

Isoelectric Point (pI)

49.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000929)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07360 AT2G29580 AT5G04210 AT5G07060 AT5G07060
fragaria_vesca	FvH4_4g11590 FvH4_4g11590 FvH4_4g11590 FvH4_4g11590 FvH4_4g11590 FvH4_4g36530 FvH4_4g36530 FvH4_7g07370
malus_domestica	MD01G1110000.v1.1 MD07G1175800.v1.1 MD16G1006600.v1.1
prunus_persica	Prupe.2G214800_v2.0.a1 Prupe.8G143100_v2.0.a1 Prupe.8G143100_v2.0.a1 Prupe.8G143100_v2.0.a1
pyrus_communis	pycom01g13690 pycom07g17000 pycom16g00630
rosa_chinensis	RchiOBHm_Chr1g0337351 RchiOBHm_Chr4g0408701 RchiOBHm_Chr4g0446281
rosa_laevigata	RLG00000005673 RLG00000008640 RLG00000029280 RLG00000029283
rosa_multiflora	Rmu_co8341103.1_g000001 Rmu_co8350441.1_g000001 Rmu_co8408813.1_g000001 Rmu_co8519167.1_g000003 Rmu_co8522047.1_g000002 Rmu_sc0002266.1_g000007 Rmu_sc0003060.1_g000002 Rmu_sc0005878.1_g000023 Rmu_sc0021927.1_g000001
rosa_roxburghii	Rroxscaffold_4G00314450 Rroxscaffold_4G00314490 Rroxscaffold_5G00353060 Rroxscaffold_5G00386720
rosa_rugosa	Rorug01G0134600.1 Rorug01G0134800.1 Rorug04G0086900 Rorug04G0369600 Rorug04G0369600
rosa_samantha	Rh1AG153600 Rh1BG122900 Rh1BG123100 Rh1CG144600 Rh1DG161300 Rh1DG161500 Rh4AG431500 Rh4BG148400 Rh4BG440900 Rh4CG159100 Rh4CG458200 Rh4DG144000 Rh4DG439400
rosa_wichuraiana	Rw1G012580 Rw4G012370 Rw4G036850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	13, 256
AccI	GTMKAC	1 cut(s)	247
AccII	CGCG	1 cut(s)	262
AciI	CCGC	2 cut(s)	260, 299
AclWI	GGATC	1 cut(s)	286
AfaI	GTAC	1 cut(s)	357
AfiI	CCNNNNNNNGG	1 cut(s)	326
AgsI	TTSAA	1 cut(s)	232
AjnI	CCWGG	1 cut(s)	239
AluBI	AGCT	1 cut(s)	208
AluI	AGCT	1 cut(s)	208
Alw26I	GTCTC	1 cut(s)	336
AlwI	GGATC	1 cut(s)	286
AoxI	GGCC	1 cut(s)	237
Asp700I	GAANNNNTTC	1 cut(s)	33
AsuHPI	GGTGA	1 cut(s)	226
AxyI	CCTNAGG	1 cut(s)	252
BaeGI	GKGCMC	1 cut(s)	336
BanI	GGYRCC	2 cut(s)	13, 256
BccI	CCATC	1 cut(s)	59
BciT130I	CCWGG	1 cut(s)	241
BcoDI	GTCTC	1 cut(s)	336
BisI	GCNGC	1 cut(s)	300
BlsI	GCNGC	1 cut(s)	301
Bme1390I	CCNGG	1 cut(s)	241
BmiI	GGNNCC	2 cut(s)	15, 258
BmrFI	CCNGG	1 cut(s)	241
BpmI	CTGGAG	1 cut(s)	41
BpuEI	CTTGAG	2 cut(s)	109, 306
Bsa29I	ATCGAT	1 cut(s)	125
BsaI	GGTCTC	1 cut(s)	336
BsaJI	CCNNGG	1 cut(s)	240
Bsc4I	CCNNNNNNNGG	1 cut(s)	326
Bse21I	CCTNAGG	1 cut(s)	252
BseBI	CCWGG	1 cut(s)	241
BseCI	ATCGAT	1 cut(s)	125
BseDI	CCNNGG	1 cut(s)	240
BseGI	GGATG	2 cut(s)	155, 277
BseLI	CCNNNNNNNGG	1 cut(s)	326
BseMII	CTCAG	1 cut(s)	266
BseRI	GAGGAG	1 cut(s)	203
BseSI	GKGCMC	1 cut(s)	336
BsgI	GTGCAG	3 cut(s)	204, 287, 372
Bsh1236I	CGCG	1 cut(s)	262
BshFI	GGCC	1 cut(s)	239
BshNI	GGYRCC	2 cut(s)	13, 256
BshVI	ATCGAT	1 cut(s)	125
BslI	CCNNNNNNNGG	1 cut(s)	326
BsmAI	GTCTC	1 cut(s)	336
BsmI	GAATGC	1 cut(s)	33
BsnI	GGCC	1 cut(s)	239
Bso31I	GGTCTC	1 cut(s)	336
Bsp1286I	GDGCHC	1 cut(s)	336
Bsp143I	GATC	2 cut(s)	117, 278
BspACI	CCGC	2 cut(s)	260, 299
BspANI	GGCC	1 cut(s)	239
BspCNI	CTCAG	1 cut(s)	265
BspDI	ATCGAT	1 cut(s)	125
BspFNI	CGCG	1 cut(s)	262
BspLI	GGNNCC	2 cut(s)	15, 258
BspPI	GGATC	1 cut(s)	286
BspT107I	GGYRCC	2 cut(s)	13, 256
BspTNI	GGTCTC	1 cut(s)	336
BssECI	CCNNGG	1 cut(s)	240
BssMI	GATC	2 cut(s)	117, 278
Bst2UI	CCWGG	1 cut(s)	241
Bst4CI	ACNGT	1 cut(s)	291
BstC8I	GCNNGC	1 cut(s)	332
BstDEI	CTNAG	1 cut(s)	252
BstENI	CCTNNNNNAGG	1 cut(s)	324
BstF5I	GGATG	2 cut(s)	155, 277
BstFNI	CGCG	1 cut(s)	262
BstKTI	GATC	2 cut(s)	120, 281
BstMAI	GTCTC	1 cut(s)	336
BstMBI	GATC	2 cut(s)	117, 278
BstNI	CCWGG	1 cut(s)	241
BstSCI	CCNGG	1 cut(s)	239
BstSLI	GKGCMC	1 cut(s)	336
BstUI	CGCG	1 cut(s)	262
BstX2I	RGATCY	1 cut(s)	278
BstYI	RGATCY	1 cut(s)	278
Bsu15I	ATCGAT	1 cut(s)	125
Bsu36I	CCTNAGG	1 cut(s)	252
BsuRI	GGCC	1 cut(s)	239
BsuTUI	ATCGAT	1 cut(s)	125
BtsCI	GGATG	2 cut(s)	155, 277
Cac8I	GCNNGC	1 cut(s)	332
ClaI	ATCGAT	1 cut(s)	125
Csp6I	GTAC	1 cut(s)	356
CviAII	CATG	1 cut(s)	110
CviJI	RGCY	3 cut(s)	208, 239, 302
CviKI_1	RGCY	3 cut(s)	208, 239, 302
CviQI	GTAC	1 cut(s)	356
DdeI	CTNAG	1 cut(s)	252
DpnI	GATC	2 cut(s)	119, 280
DpnII	GATC	2 cut(s)	117, 278
Eco31I	GGTCTC	1 cut(s)	336
Eco81I	CCTNAGG	1 cut(s)	252
EcoNI	CCTNNNNNAGG	1 cut(s)	324
EcoRII	CCWGG	1 cut(s)	239
FaeI	CATG	1 cut(s)	113
FaiI	YATR	3 cut(s)	48, 111, 168
FatI	CATG	1 cut(s)	109
FblI	GTMKAC	1 cut(s)	247
Fnu4HI	GCNGC	1 cut(s)	300
FokI	GGATG	2 cut(s)	162, 284
Fsp4HI	GCNGC	1 cut(s)	300
GluI	GCNGC	1 cut(s)	300
GsuI	CTGGAG	1 cut(s)	41
HaeIII	GGCC	1 cut(s)	239
Hin1II	CATG	1 cut(s)	113
HinfI	GANTC	1 cut(s)	122
HphI	GGTGA	1 cut(s)	226
Hpy166II	GTNNAC	1 cut(s)	248
Hpy188I	TCNGA	3 cut(s)	39, 79, 295
Hpy188III	TCNNGA	1 cut(s)	20
Hpy8I	GTNNAC	1 cut(s)	248
HpyAV	CCTTC	2 cut(s)	173, 211
HpyCH4III	ACNGT	1 cut(s)	291
HpyCH4V	TGCA	4 cut(s)	170, 185, 268, 353
HpyF3I	CTNAG	1 cut(s)	252
Hsp92II	CATG	1 cut(s)	113
Kzo9I	GATC	2 cut(s)	117, 278
LmnI	GCTCC	1 cut(s)	79
LpnPI	CCDG	7 cut(s)	5, 68, 194, 226, 239, 253, 254
MalI	GATC	2 cut(s)	119, 280
MboI	GATC	2 cut(s)	117, 278
MflI	RGATCY	1 cut(s)	278
MhlI	GDGCHC	1 cut(s)	336
MmeI	TCCRAC	1 cut(s)	273
MroXI	GAANNNNTTC	1 cut(s)	33
MspR9I	CCNGG	1 cut(s)	241
Mva1269I	GAATGC	1 cut(s)	33
MvaI	CCWGG	1 cut(s)	241
MvnI	CGCG	1 cut(s)	262
NdeII	GATC	2 cut(s)	117, 278
NlaIII	CATG	1 cut(s)	113
NlaIV	GGNNCC	2 cut(s)	15, 258
PctI	GAATGC	1 cut(s)	33
PdmI	GAANNNNTTC	1 cut(s)	33
PfeI	GAWTC	1 cut(s)	122
PkrI	GCNGC	1 cut(s)	301
Psp6I	CCWGG	1 cut(s)	239
PspGI	CCWGG	1 cut(s)	239
PspN4I	GGNNCC	2 cut(s)	15, 258
PsuI	RGATCY	1 cut(s)	278
RsaI	GTAC	1 cut(s)	357
RsaNI	GTAC	1 cut(s)	356
SatI	GCNGC	1 cut(s)	300
Sau3AI	GATC	2 cut(s)	117, 278
ScrFI	CCNGG	1 cut(s)	241
SduI	GDGCHC	1 cut(s)	336
SetI	ASST	3 cut(s)	184, 210, 253
SmlI	CTYRAG	2 cut(s)	88, 321
SmoI	CTYRAG	2 cut(s)	88, 321
SsiI	CCGC	2 cut(s)	260, 299
StyD4I	CCNGG	1 cut(s)	239
TaaI	ACNGT	1 cut(s)	291
TaqI	TCGA	2 cut(s)	120, 125
TatI	WGTACW	1 cut(s)	355
TauI	GCSGC	1 cut(s)	302
TfiI	GAWTC	1 cut(s)	122
TspDTI	ATGAA	1 cut(s)	98
XagI	CCTNNNNNAGG	1 cut(s)	324
XmiI	GTMKAC	1 cut(s)	247
XmnI	GAANNNNTTC	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.