Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8350441.1

Orthogroup ID

OG0000929

Physical Location & Seq

Genomic Coordinates Reverse (-)

597 .. 989

Gene Structure 393 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8350441.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

atggatcctcaaagaatgggtgcagttgttcgatcgcaggatggagctccaagtggccccagagggtcaggtgagaacagttctggttctgagaggcagcattatgcttttcaaaatatggctcctccacatggtcaatataatcagcagttttatcctcaaccatacagcggttatatgcctccaccaccttatcagcaataccctccgcaatatcatgctgcagtgccaccaccatcatccttgccgatgaatcaacattaccagcattctgcaacaccagggactgcaccctcaggttctacatcgtctgtacctgcacaatcaaattctggaccttccgagtctggctctggctctgggcctgcgccaacagggtcatcacagcagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000387 GO:0000398 GO:0000974 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008380 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0017069 GO:0017070 GO:0022607 GO:0022613 GO:0022618 GO:0032991 GO:0034622 GO:0034641 GO:0036002 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0051704 GO:0051707 GO:0065003 GO:0071006 GO:0071007 GO:0071012 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:0098542 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1 Torus

Protein Analysis

130

Amino Acids

13.62

Weight (kDa)

6.48

Isoelectric Point (pI)

84.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000929)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07360 AT2G29580 AT5G04210 AT5G07060 AT5G07060
fragaria_vesca	FvH4_4g11590 FvH4_4g11590 FvH4_4g11590 FvH4_4g11590 FvH4_4g11590 FvH4_4g36530 FvH4_4g36530 FvH4_7g07370
malus_domestica	MD01G1110000.v1.1 MD07G1175800.v1.1 MD16G1006600.v1.1
prunus_persica	Prupe.2G214800_v2.0.a1 Prupe.8G143100_v2.0.a1 Prupe.8G143100_v2.0.a1 Prupe.8G143100_v2.0.a1
pyrus_communis	pycom01g13690 pycom07g17000 pycom16g00630
rosa_chinensis	RchiOBHm_Chr1g0337351 RchiOBHm_Chr4g0408701 RchiOBHm_Chr4g0446281
rosa_laevigata	RLG00000005673 RLG00000008640 RLG00000029280 RLG00000029283
rosa_multiflora	Rmu_co8341103.1_g000001 Rmu_co8350441.1_g000001 Rmu_co8408813.1_g000001 Rmu_co8519167.1_g000003 Rmu_co8522047.1_g000002 Rmu_sc0002266.1_g000007 Rmu_sc0003060.1_g000002 Rmu_sc0005878.1_g000023 Rmu_sc0021927.1_g000001
rosa_roxburghii	Rroxscaffold_4G00314450 Rroxscaffold_4G00314490 Rroxscaffold_5G00353060 Rroxscaffold_5G00386720
rosa_rugosa	Rorug01G0134600.1 Rorug01G0134800.1 Rorug04G0086900 Rorug04G0369600 Rorug04G0369600
rosa_samantha	Rh1AG153600 Rh1BG122900 Rh1BG123100 Rh1CG144600 Rh1DG161300 Rh1DG161500 Rh4AG431500 Rh4BG148400 Rh4BG440900 Rh4CG159100 Rh4CG458200 Rh4DG144000 Rh4DG439400
rosa_wichuraiana	Rw1G012580 Rw4G012370 Rw4G036850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	325
AciI	CCGC	2 cut(s)	171, 209
AclWI	GGATC	1 cut(s)	12
AcsI	RAATTY	1 cut(s)	328
AfaI	GTAC	1 cut(s)	315
AfiI	CCNNNNNNNGG	2 cut(s)	131, 170
AgsI	TTSAA	1 cut(s)	113
AjnI	CCWGG	1 cut(s)	280
AleI	CACNNNNGTG	1 cut(s)	388
AluBI	AGCT	1 cut(s)	47
AluI	AGCT	1 cut(s)	47
Alw21I	GWGCWC	1 cut(s)	49
AlwI	GGATC	1 cut(s)	12
AlwNI	CAGNNNCTG	1 cut(s)	287
AoxI	GGCC	2 cut(s)	55, 362
ApeKI	GCWGC	2 cut(s)	97, 221
ApoI	RAATTY	1 cut(s)	328
AspLEI	GCGC	1 cut(s)	370
AspS9I	GGNCC	3 cut(s)	56, 335, 362
AsuHPI	GGTGA	1 cut(s)	83
AvaII	GGWCC	1 cut(s)	335
AxyI	CCTNAGG	1 cut(s)	295
BamHI	GGATCC	1 cut(s)	4
BanII	GRGCYC	1 cut(s)	49
Bbv12I	GWGCWC	1 cut(s)	49
BbvI	GCAGC	2 cut(s)	109, 208
BccI	CCATC	2 cut(s)	35, 244
BciT130I	CCWGG	1 cut(s)	282
BfmI	CTRYAG	1 cut(s)	222
BfuAI	ACCTGC	1 cut(s)	325
BisI	GCNGC	2 cut(s)	98, 222
BlsI	GCNGC	2 cut(s)	99, 223
Bme1390I	CCNGG	1 cut(s)	282
Bme18I	GGWCC	1 cut(s)	335
BmgT120I	GGNCC	3 cut(s)	56, 335, 362
BmiI	GGNNCC	3 cut(s)	6, 58, 123
BmrFI	CCNGG	1 cut(s)	282
BplI	GAGNNNNNCTC	2 cut(s)	335, 367
BsaJI	CCNNGG	1 cut(s)	281
Bsc4I	CCNNNNNNNGG	2 cut(s)	131, 170
Bse21I	CCTNAGG	1 cut(s)	295
BseBI	CCWGG	1 cut(s)	282
BseDI	CCNNGG	1 cut(s)	281
BseGI	GGATG	2 cut(s)	46, 239
BseLI	CCNNNNNNNGG	2 cut(s)	131, 170
BseMII	CTCAG	2 cut(s)	81, 309
BseRI	GAGGAG	1 cut(s)	114
BseXI	GCAGC	2 cut(s)	109, 208
BsgI	GTGCAG	3 cut(s)	42, 273, 303
Bsh1285I	CGRYCG	1 cut(s)	35
BshFI	GGCC	2 cut(s)	57, 364
BsiEI	CGRYCG	1 cut(s)	35
BsiHKAI	GWGCWC	1 cut(s)	49
BslFI	GGGAC	1 cut(s)	298
BslI	CCNNNNNNNGG	2 cut(s)	131, 170
BsmFI	GGGAC	1 cut(s)	298
BsmI	GAATGC	1 cut(s)	268
BsnI	GGCC	2 cut(s)	57, 364
Bsp1286I	GDGCHC	1 cut(s)	49
Bsp143I	GATC	2 cut(s)	4, 32
BspACI	CCGC	2 cut(s)	171, 209
BspANI	GGCC	2 cut(s)	57, 364
BspCNI	CTCAG	2 cut(s)	82, 308
BspLI	GGNNCC	3 cut(s)	6, 58, 123
BspMAI	CTGCAG	1 cut(s)	226
BspMI	ACCTGC	1 cut(s)	325
BspPI	GGATC	1 cut(s)	12
BssECI	CCNNGG	1 cut(s)	281
BssMI	GATC	2 cut(s)	4, 32
Bst2UI	CCWGG	1 cut(s)	282
Bst4CI	ACNGT	1 cut(s)	80
BstC8I	GCNNGC	1 cut(s)	366
BstDEI	CTNAG	2 cut(s)	90, 295
BstF5I	GGATG	2 cut(s)	46, 239
BstHHI	GCGC	1 cut(s)	370
BstKTI	GATC	2 cut(s)	7, 35
BstMBI	GATC	2 cut(s)	4, 32
BstMCI	CGRYCG	1 cut(s)	35
BstNI	CCWGG	1 cut(s)	282
BstSCI	CCNGG	1 cut(s)	280
BstSFI	CTRYAG	1 cut(s)	222
BstV1I	GCAGC	2 cut(s)	109, 208
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
Bsu36I	CCTNAGG	1 cut(s)	295
BsuRI	GGCC	2 cut(s)	57, 364
BtsCI	GGATG	2 cut(s)	46, 239
BtsI	GCAGTG	1 cut(s)	231
BtsIMutI	CAGTG	1 cut(s)	231
BveI	ACCTGC	1 cut(s)	325
Cac8I	GCNNGC	1 cut(s)	366
CaiI	CAGNNNCTG	1 cut(s)	287
CfoI	GCGC	1 cut(s)	370
Cfr13I	GGNCC	3 cut(s)	56, 335, 362
Csp6I	GTAC	1 cut(s)	314
CviAII	CATG	2 cut(s)	131, 218
CviJI	RGCY	6 cut(s)	47, 57, 122, 351, 357, 364
CviKI_1	RGCY	6 cut(s)	47, 57, 122, 351, 357, 364
CviQI	GTAC	1 cut(s)	314
DdeI	CTNAG	2 cut(s)	90, 295
DpnI	GATC	2 cut(s)	6, 34
DpnII	GATC	2 cut(s)	4, 32
Ecl136II	GAGCTC	1 cut(s)	47
Eco24I	GRGCYC	1 cut(s)	49
Eco47I	GGWCC	1 cut(s)	335
Eco53kI	GAGCTC	1 cut(s)	47
Eco81I	CCTNAGG	1 cut(s)	295
EcoICRI	GAGCTC	1 cut(s)	47
EcoRII	CCWGG	1 cut(s)	280
EcoT38I	GRGCYC	1 cut(s)	49
FaeI	CATG	2 cut(s)	134, 221
FaiI	YATR	8 cut(s)	105, 119, 132, 141, 166, 177, 179, 219
FaqI	GGGAC	1 cut(s)	298
FatI	CATG	2 cut(s)	130, 217
Fnu4HI	GCNGC	2 cut(s)	98, 222
FokI	GGATG	2 cut(s)	53, 226
FriOI	GRGCYC	1 cut(s)	49
Fsp4HI	GCNGC	2 cut(s)	98, 222
GlaI	GCGC	1 cut(s)	369
GluI	GCNGC	2 cut(s)	98, 222
HaeIII	GGCC	2 cut(s)	57, 364
HhaI	GCGC	1 cut(s)	370
Hin1II	CATG	2 cut(s)	134, 221
Hin6I	GCGC	1 cut(s)	368
HinP1I	GCGC	1 cut(s)	368
HinfI	GANTC	2 cut(s)	253, 344
HphI	GGTGA	1 cut(s)	83
Hpy188I	TCNGA	2 cut(s)	91, 343
Hpy188III	TCNNGA	1 cut(s)	333
HpyAV	CCTTC	1 cut(s)	348
HpyCH4III	ACNGT	1 cut(s)	80
HpyCH4V	TGCA	5 cut(s)	23, 224, 275, 290, 320
HpyF3I	CTNAG	2 cut(s)	90, 295
Hsp92II	CATG	2 cut(s)	134, 221
HspAI	GCGC	1 cut(s)	368
Kzo9I	GATC	2 cut(s)	4, 32
LmnI	GCTCC	3 cut(s)	44, 52, 127
Lsp1109I	GCAGC	2 cut(s)	109, 208
MalI	GATC	2 cut(s)	6, 34
MboI	GATC	2 cut(s)	4, 32
MflI	RGATCY	1 cut(s)	4
MhlI	GDGCHC	1 cut(s)	49
MluCI	AATT	1 cut(s)	328
MlyI	GAGTC	1 cut(s)	353
MnlI	CCTC	8 cut(s)	18, 56, 87, 135, 168, 192, 216, 304
MslI	CAYNNNNRTG	1 cut(s)	388
MspA1I	CMGCKG	1 cut(s)	171
MspR9I	CCNGG	1 cut(s)	282
Mva1269I	GAATGC	1 cut(s)	268
MvaI	CCWGG	1 cut(s)	282
NdeII	GATC	2 cut(s)	4, 32
NlaIII	CATG	2 cut(s)	134, 221
NlaIV	GGNNCC	3 cut(s)	6, 58, 123
OliI	CACNNNNGTG	1 cut(s)	388
PctI	GAATGC	1 cut(s)	268
PfeI	GAWTC	1 cut(s)	253
PkrI	GCNGC	2 cut(s)	99, 223
Ple19I	CGATCG	1 cut(s)	35
PleI	GAGTC	1 cut(s)	352
PpsI	GAGTC	1 cut(s)	352
Psp124BI	GAGCTC	1 cut(s)	49
Psp6I	CCWGG	1 cut(s)	280
PspGI	CCWGG	1 cut(s)	280
PspN4I	GGNNCC	3 cut(s)	6, 58, 123
PspPI	GGNCC	3 cut(s)	56, 335, 362
PstI	CTGCAG	1 cut(s)	226
PstNI	CAGNNNCTG	1 cut(s)	287
PsuI	RGATCY	1 cut(s)	4
PvuI	CGATCG	1 cut(s)	35
RsaI	GTAC	1 cut(s)	315
RsaNI	GTAC	1 cut(s)	314
RseI	CAYNNNNRTG	1 cut(s)	388
SacI	GAGCTC	1 cut(s)	49
SatI	GCNGC	2 cut(s)	98, 222
Sau3AI	GATC	2 cut(s)	4, 32
Sau96I	GGNCC	3 cut(s)	56, 335, 362
SchI	GAGTC	1 cut(s)	353
ScrFI	CCNGG	1 cut(s)	282
SduI	GDGCHC	1 cut(s)	49
SetI	ASST	6 cut(s)	49, 73, 193, 301, 319, 340
SfcI	CTRYAG	1 cut(s)	222
SinI	GGWCC	1 cut(s)	335
SmiMI	CAYNNNNRTG	1 cut(s)	388
Sse9I	AATT	1 cut(s)	328
SsiI	CCGC	2 cut(s)	171, 209
SstI	GAGCTC	1 cut(s)	49
StyD4I	CCNGG	1 cut(s)	280
TaaI	ACNGT	1 cut(s)	80
TaqI	TCGA	1 cut(s)	31
TasI	AATT	1 cut(s)	328
TfiI	GAWTC	1 cut(s)	253
TscAI	CASTG	1 cut(s)	231
TseI	GCWGC	2 cut(s)	97, 221
TspDTI	ATGAA	1 cut(s)	266
TspRI	CASTG	1 cut(s)	231
VpaK11BI	GGWCC	1 cut(s)	335
XapI	RAATTY	1 cut(s)	328

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.