Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0000929

Physical Location & Seq

Genomic Coordinates Forward (+)

35965701 .. 35966164

Gene Structure 464 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029280

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGGGGTCTTTGGAGCCTCTGGAGGACGAAAGCATTCGGACTTTATATGTAGGGGGTGTGGTTGATAGGAGATTTTCGGAGCAGGACTTGAGGGATTGCTTCTGGGTTCATGGCAGGATCGAATCAATTAGGGTGGTGGGGCAAGGATGTGCTTTTGTGAGTTATGCAACCAGAGAAGGTGCAGAAAAGGCTGAGGATGAGGGATCTAGTAGGCAACTGATGGCGGCTCATTTTGGGTGGTTGCCTCAAGGAGACGTGCCCCAGAGAGACCAATGTGCAGTACAACAAGACTACTACATGCCACCTCCACCTTCGCATGGGGGAACAACATTTTTTCCATCAATGGATCCTCAAAGAATGGATGCCCTTGTTGGTCGGACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000387 GO:0000398 GO:0000974 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008380 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0017069 GO:0017070 GO:0022607 GO:0022613 GO:0022618 GO:0032991 GO:0034622 GO:0034641 GO:0036002 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0051704 GO:0051707 GO:0065003 GO:0071006 GO:0071007 GO:0071012 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:0098542 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1 Torus

Protein Analysis

128

Amino Acids

14.21

Weight (kDa)

4.82

Isoelectric Point (pI)

61.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	15 - 66	7.4e-08	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000929)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07360 AT2G29580 AT5G04210 AT5G07060 AT5G07060
fragaria_vesca	FvH4_4g11590 FvH4_4g11590 FvH4_4g11590 FvH4_4g11590 FvH4_4g11590 FvH4_4g36530 FvH4_4g36530 FvH4_7g07370
malus_domestica	MD01G1110000.v1.1 MD07G1175800.v1.1 MD16G1006600.v1.1
prunus_persica	Prupe.2G214800_v2.0.a1 Prupe.8G143100_v2.0.a1 Prupe.8G143100_v2.0.a1 Prupe.8G143100_v2.0.a1
pyrus_communis	pycom01g13690 pycom07g17000 pycom16g00630
rosa_chinensis	RchiOBHm_Chr1g0337351 RchiOBHm_Chr4g0408701 RchiOBHm_Chr4g0446281
rosa_laevigata	RLG00000005673 RLG00000008640 RLG00000029280 RLG00000029283
rosa_multiflora	Rmu_co8341103.1_g000001 Rmu_co8350441.1_g000001 Rmu_co8408813.1_g000001 Rmu_co8519167.1_g000003 Rmu_co8522047.1_g000002 Rmu_sc0002266.1_g000007 Rmu_sc0003060.1_g000002 Rmu_sc0005878.1_g000023 Rmu_sc0021927.1_g000001
rosa_roxburghii	Rroxscaffold_4G00314450 Rroxscaffold_4G00314490 Rroxscaffold_5G00353060 Rroxscaffold_5G00386720
rosa_rugosa	Rorug01G0134600.1 Rorug01G0134800.1 Rorug04G0086900 Rorug04G0369600 Rorug04G0369600
rosa_samantha	Rh1AG153600 Rh1BG122900 Rh1BG123100 Rh1CG144600 Rh1DG161300 Rh1DG161500 Rh4AG431500 Rh4BG148400 Rh4BG440900 Rh4CG159100 Rh4CG458200 Rh4DG144000 Rh4DG439400
rosa_wichuraiana	Rw1G012580 Rw4G012370 Rw4G036850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	224
AclWI	GGATC	4 cut(s)	125, 211, 341, 354
AfaI	GTAC	1 cut(s)	282
AfiI	CCNNNNNNNGG	1 cut(s)	317
AjiI	CACGTC	1 cut(s)	256
Alw26I	GTCTC	2 cut(s)	246, 261
AlwI	GGATC	4 cut(s)	125, 211, 341, 354
Asp700I	GAANNNNTTC	1 cut(s)	33
BaeGI	GKGCMC	1 cut(s)	261
BamHI	GGATCC	1 cut(s)	346
BbvCI	CCTCAGC	1 cut(s)	192
BccI	CCATC	2 cut(s)	214, 346
BcoDI	GTCTC	2 cut(s)	246, 261
BfaI	CTAG	1 cut(s)	207
BisI	GCNGC	1 cut(s)	225
BlsI	GCNGC	1 cut(s)	226
BmgBI	CACGTC	1 cut(s)	256
BmiI	GGNNCC	2 cut(s)	15, 348
BmsI	GCATC	1 cut(s)	352
BpmI	CTGGAG	1 cut(s)	41
Bpu10I	CCTNAGC	1 cut(s)	192
BpuEI	CTTGAG	2 cut(s)	109, 231
BsaI	GGTCTC	1 cut(s)	261
Bsc4I	CCNNNNNNNGG	1 cut(s)	317
BseGI	GGATG	3 cut(s)	152, 202, 367
BseLI	CCNNNNNNNGG	1 cut(s)	317
BseMII	CTCAG	1 cut(s)	183
BseSI	GKGCMC	1 cut(s)	261
BsgI	GTGCAG	2 cut(s)	201, 297
BslI	CCNNNNNNNGG	1 cut(s)	317
BsmAI	GTCTC	2 cut(s)	246, 261
BsmBI	CGTCTC	1 cut(s)	246
BsmI	GAATGC	1 cut(s)	33
Bso31I	GGTCTC	1 cut(s)	261
Bsp1286I	GDGCHC	1 cut(s)	261
Bsp143I	GATC	3 cut(s)	117, 203, 346
BspACI	CCGC	1 cut(s)	224
BspCNI	CTCAG	1 cut(s)	184
BspLI	GGNNCC	2 cut(s)	15, 348
BspPI	GGATC	4 cut(s)	125, 211, 341, 354
BspTNI	GGTCTC	1 cut(s)	261
BssMI	GATC	3 cut(s)	117, 203, 346
BstDEI	CTNAG	1 cut(s)	192
BstF5I	GGATG	3 cut(s)	152, 202, 367
BstKTI	GATC	3 cut(s)	120, 206, 349
BstMAI	GTCTC	2 cut(s)	246, 261
BstMBI	GATC	3 cut(s)	117, 203, 346
BstMWI	GCNNNNNNNGC	1 cut(s)	188
BstNSI	RCATGY	1 cut(s)	301
BstSLI	GKGCMC	1 cut(s)	261
BstX2I	RGATCY	2 cut(s)	203, 346
BstYI	RGATCY	2 cut(s)	203, 346
BtrI	CACGTC	1 cut(s)	256
BtsCI	GGATG	3 cut(s)	152, 202, 367
Csp6I	GTAC	1 cut(s)	281
CspCI	CAANNNNNGTGG	2 cut(s)	114, 149
CviAII	CATG	3 cut(s)	110, 298, 317
CviJI	RGCY	3 cut(s)	16, 191, 227
CviKI_1	RGCY	3 cut(s)	16, 191, 227
CviQI	GTAC	1 cut(s)	281
DdeI	CTNAG	1 cut(s)	192
DpnI	GATC	3 cut(s)	119, 205, 348
DpnII	GATC	3 cut(s)	117, 203, 346
Eco31I	GGTCTC	1 cut(s)	261
Esp3I	CGTCTC	1 cut(s)	246
FaeI	CATG	3 cut(s)	113, 301, 320
FaiI	YATR	6 cut(s)	46, 48, 111, 165, 299, 318
FatI	CATG	3 cut(s)	109, 297, 316
Fnu4HI	GCNGC	1 cut(s)	225
FokI	GGATG	3 cut(s)	159, 209, 374
Fsp4HI	GCNGC	1 cut(s)	225
FspBI	CTAG	1 cut(s)	207
GluI	GCNGC	1 cut(s)	225
GsuI	CTGGAG	1 cut(s)	41
Hin1II	CATG	3 cut(s)	113, 301, 320
HinfI	GANTC	1 cut(s)	122
Hpy188I	TCNGA	3 cut(s)	39, 79, 378
Hpy188III	TCNNGA	1 cut(s)	20
HpyAV	CCTTC	2 cut(s)	170, 321
HpyCH4IV	ACGT	1 cut(s)	255
HpyCH4V	TGCA	3 cut(s)	167, 182, 278
HpyF10VI	GCNNNNNNNGC	1 cut(s)	188
HpyF3I	CTNAG	1 cut(s)	192
HpySE526I	ACGT	1 cut(s)	255
Hsp92II	CATG	3 cut(s)	113, 301, 320
Kzo9I	GATC	3 cut(s)	117, 203, 346
LmnI	GCTCC	2 cut(s)	13, 79
LpnPI	CCDG	6 cut(s)	5, 68, 88, 100, 184, 275
LweI	GCATC	1 cut(s)	352
MaeI	CTAG	1 cut(s)	207
MaeII	ACGT	1 cut(s)	255
MalI	GATC	3 cut(s)	119, 205, 348
MboI	GATC	3 cut(s)	117, 203, 346
MflI	RGATCY	2 cut(s)	203, 346
MhlI	GDGCHC	1 cut(s)	261
MluCI	AATT	1 cut(s)	126
MmeI	TCCRAC	1 cut(s)	356
MnlI	CCTC	8 cut(s)	16, 27, 84, 187, 193, 255, 315, 360
MroXI	GAANNNNTTC	1 cut(s)	33
MseI	TTAA	1 cut(s)	382
Mva1269I	GAATGC	1 cut(s)	33
MwoI	GCNNNNNNNGC	1 cut(s)	188
NdeII	GATC	3 cut(s)	117, 203, 346
NlaIII	CATG	3 cut(s)	113, 301, 320
NlaIV	GGNNCC	2 cut(s)	15, 348
NspI	RCATGY	1 cut(s)	301
PctI	GAATGC	1 cut(s)	33
PdmI	GAANNNNTTC	1 cut(s)	33
PfeI	GAWTC	1 cut(s)	122
PkrI	GCNGC	1 cut(s)	226
PspN4I	GGNNCC	2 cut(s)	15, 348
PsuI	RGATCY	2 cut(s)	203, 346
RsaI	GTAC	1 cut(s)	282
RsaNI	GTAC	1 cut(s)	281
SaqAI	TTAA	1 cut(s)	382
SatI	GCNGC	1 cut(s)	225
Sau3AI	GATC	3 cut(s)	117, 203, 346
SduI	GDGCHC	1 cut(s)	261
SetI	ASST	4 cut(s)	181, 258, 307, 313
SfaNI	GCATC	1 cut(s)	352
SmlI	CTYRAG	2 cut(s)	88, 246
SmoI	CTYRAG	2 cut(s)	88, 246
Sse9I	AATT	1 cut(s)	126
SsiI	CCGC	1 cut(s)	224
SspMI	CTAG	1 cut(s)	207
TaiI	ACGT	1 cut(s)	258
TaqI	TCGA	1 cut(s)	120
TasI	AATT	1 cut(s)	126
TatI	WGTACW	1 cut(s)	280
TauI	GCSGC	1 cut(s)	227
TfiI	GAWTC	1 cut(s)	122
Tru1I	TTAA	1 cut(s)	382
Tru9I	TTAA	1 cut(s)	382
TspDTI	ATGAA	1 cut(s)	98
XceI	RCATGY	1 cut(s)	301
XmnI	GAANNNNTTC	1 cut(s)	33
XspI	CTAG	1 cut(s)	207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.