Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0000929

Physical Location & Seq

Genomic Coordinates Forward (+)

31189447 .. 31190127

Gene Structure 681 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG144600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGGGTCTTTGGAGCCTCCTGAGGACGAGAGTATTAGGACTTTATATGTGGGGGGTGTGGTTGATGGAAGAGTTTCGGAGCAGGACTTGAGGGATTGCTTTTGGGTTCATGGCGAGATCGAATCGATTAGGGTGGTGGGGCAAAGAGGATGTGCTTTTGTGACTTATGTAACGAGAGAAGGTGCGGAGAAGGCTGCGGAGGAACTTTGTAATAAGCTGGTGGTGAAGGGTTTGAGATTGAAGTTGGCATGGGGTAGACCTCAGGCGCCACGAGTGCAGGATGAGGGAGCTAGTAGGCAGCCGGCTGCGTCAGGGGCACATTGTGGGTGGTTGCCTCAAGTAGGCGTTCCCCAACAAGACCAATCAGCAGTACAGCAATACTACTACATGCCACGTCCACCTTCGCAAGGGGGAACAACATTTTATCCATCAATGGATCCTCAAAGAATGGGCACCCTTGTTGGCGGACCTAAAGCTGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000387 GO:0000398 GO:0000974 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008380 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0017069 GO:0017070 GO:0022607 GO:0022613 GO:0022618 GO:0032991 GO:0034622 GO:0034641 GO:0036002 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0051704 GO:0051707 GO:0065003 GO:0071006 GO:0071007 GO:0071012 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:0098542 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1 Torus

Protein Analysis

160

Amino Acids

17.51

Weight (kDa)

5.75

Isoelectric Point (pI)

58.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	15 - 72	1.9e-09	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000929)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07360 AT2G29580 AT5G04210 AT5G07060 AT5G07060
fragaria_vesca	FvH4_4g11590 FvH4_4g11590 FvH4_4g11590 FvH4_4g11590 FvH4_4g11590 FvH4_4g36530 FvH4_4g36530 FvH4_7g07370
malus_domestica	MD01G1110000.v1.1 MD07G1175800.v1.1 MD16G1006600.v1.1
prunus_persica	Prupe.2G214800_v2.0.a1 Prupe.8G143100_v2.0.a1 Prupe.8G143100_v2.0.a1 Prupe.8G143100_v2.0.a1
pyrus_communis	pycom01g13690 pycom07g17000 pycom16g00630
rosa_chinensis	RchiOBHm_Chr1g0337351 RchiOBHm_Chr4g0408701 RchiOBHm_Chr4g0446281
rosa_laevigata	RLG00000005673 RLG00000008640 RLG00000029280 RLG00000029283
rosa_multiflora	Rmu_co8341103.1_g000001 Rmu_co8350441.1_g000001 Rmu_co8408813.1_g000001 Rmu_co8519167.1_g000003 Rmu_co8522047.1_g000002 Rmu_sc0002266.1_g000007 Rmu_sc0003060.1_g000002 Rmu_sc0005878.1_g000023 Rmu_sc0021927.1_g000001
rosa_roxburghii	Rroxscaffold_4G00314450 Rroxscaffold_4G00314490 Rroxscaffold_5G00353060 Rroxscaffold_5G00386720
rosa_rugosa	Rorug01G0134600.1 Rorug01G0134800.1 Rorug04G0086900 Rorug04G0369600 Rorug04G0369600
rosa_samantha	Rh1AG153600 Rh1BG122900 Rh1BG123100 Rh1CG144600 Rh1DG161300 Rh1DG161500 Rh4AG431500 Rh4BG148400 Rh4BG440900 Rh4CG159100 Rh4CG458200 Rh4DG144000 Rh4DG439400
rosa_wichuraiana	Rw1G012580 Rw4G012370 Rw4G036850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	265, 452
AccI	GTMKAC	1 cut(s)	256
AciI	CCGC	3 cut(s)	185, 197, 465
AclWI	GGATC	2 cut(s)	431, 444
AcyI	GRCGYC	1 cut(s)	266
AdeI	CACNNNGTG	1 cut(s)	323
AfaI	GTAC	1 cut(s)	372
AfiI	CCNNNNNNNGG	2 cut(s)	341, 407
AgsI	TTSAA	1 cut(s)	241
AjiI	CACGTC	1 cut(s)	395
AluBI	AGCT	3 cut(s)	217, 290, 476
AluI	AGCT	3 cut(s)	217, 290, 476
AlwI	GGATC	2 cut(s)	431, 444
ApeKI	GCWGC	3 cut(s)	194, 298, 305
Asp700I	GAANNNNTTC	1 cut(s)	73
AspLEI	GCGC	1 cut(s)	268
AspS9I	GGNCC	1 cut(s)	467
AsuHPI	GGTGA	1 cut(s)	235
AvaII	GGWCC	1 cut(s)	467
AxyI	CCTNAGG	2 cut(s)	21, 261
BaeGI	GKGCMC	2 cut(s)	319, 455
BamHI	GGATCC	1 cut(s)	436
BanI	GGYRCC	2 cut(s)	265, 452
BauI	CACGAG	1 cut(s)	270
BbvI	GCAGC	3 cut(s)	181, 292, 310
BccI	CCATC	2 cut(s)	59, 436
BfaI	CTAG	1 cut(s)	291
BfoI	RGCGCY	1 cut(s)	269
BisI	GCNGC	3 cut(s)	195, 299, 306
BlsI	GCNGC	3 cut(s)	196, 300, 307
Bme18I	GGWCC	1 cut(s)	467
BmgBI	CACGTC	1 cut(s)	395
BmgT120I	GGNCC	1 cut(s)	467
BmiI	GGNNCC	4 cut(s)	15, 267, 438, 454
BpuEI	CTTGAG	2 cut(s)	109, 321
Bsa29I	ATCGAT	1 cut(s)	125
BsaHI	GRCGYC	1 cut(s)	266
Bsc4I	CCNNNNNNNGG	2 cut(s)	341, 407
Bse118I	RCCGGY	1 cut(s)	301
Bse21I	CCTNAGG	2 cut(s)	21, 261
BseCI	ATCGAT	1 cut(s)	125
BseGI	GGATG	2 cut(s)	155, 286
BseLI	CCNNNNNNNGG	2 cut(s)	341, 407
BseMII	CTCAG	3 cut(s)	12, 275, 468
BseSI	GKGCMC	2 cut(s)	319, 455
BseXI	GCAGC	3 cut(s)	181, 292, 310
BsgI	GTGCAG	1 cut(s)	296
BshNI	GGYRCC	2 cut(s)	265, 452
BshVI	ATCGAT	1 cut(s)	125
BsiSI	CCGG	1 cut(s)	302
BslI	CCNNNNNNNGG	2 cut(s)	341, 407
Bsp1286I	GDGCHC	2 cut(s)	319, 455
Bsp143I	GATC	2 cut(s)	117, 436
BspACI	CCGC	3 cut(s)	185, 197, 465
BspCNI	CTCAG	3 cut(s)	13, 274, 469
BspDI	ATCGAT	1 cut(s)	125
BspLI	GGNNCC	4 cut(s)	15, 267, 438, 454
BspPI	GGATC	2 cut(s)	431, 444
BspT107I	GGYRCC	2 cut(s)	265, 452
BsrFI	RCCGGY	1 cut(s)	301
BssAI	RCCGGY	1 cut(s)	301
BssMI	GATC	2 cut(s)	117, 436
BssNI	GRCGYC	1 cut(s)	266
BssSI	CACGAG	1 cut(s)	270
Bst2BI	CACGAG	1 cut(s)	270
Bst6I	CTCTTC	1 cut(s)	64
BstACI	GRCGYC	1 cut(s)	266
BstC8I	GCNNGC	1 cut(s)	303
BstDEI	CTNAG	3 cut(s)	21, 261, 477
BstENI	CCTNNNNNAGG	2 cut(s)	339, 405
BstF5I	GGATG	2 cut(s)	155, 286
BstH2I	RGCGCY	1 cut(s)	269
BstHHI	GCGC	1 cut(s)	268
BstKTI	GATC	2 cut(s)	120, 439
BstMBI	GATC	2 cut(s)	117, 436
BstMWI	GCNNNNNNNGC	3 cut(s)	191, 274, 314
BstNSI	RCATGY	1 cut(s)	391
BstSLI	GKGCMC	2 cut(s)	319, 455
BstV1I	GCAGC	3 cut(s)	181, 292, 310
BstX2I	RGATCY	1 cut(s)	436
BstYI	RGATCY	1 cut(s)	436
Bsu15I	ATCGAT	1 cut(s)	125
Bsu36I	CCTNAGG	2 cut(s)	21, 261
BsuTUI	ATCGAT	1 cut(s)	125
BtrI	CACGTC	1 cut(s)	395
BtsCI	GGATG	2 cut(s)	155, 286
Cac8I	GCNNGC	1 cut(s)	303
CfoI	GCGC	1 cut(s)	268
Cfr10I	RCCGGY	1 cut(s)	301
Cfr13I	GGNCC	1 cut(s)	467
ClaI	ATCGAT	1 cut(s)	125
CseI	GACGC	1 cut(s)	297
Csp6I	GTAC	1 cut(s)	371
CviAII	CATG	3 cut(s)	110, 249, 388
CviJI	RGCY	7 cut(s)	16, 194, 217, 290, 301, 305, 476
CviKI_1	RGCY	7 cut(s)	16, 194, 217, 290, 301, 305, 476
CviQI	GTAC	1 cut(s)	371
DdeI	CTNAG	3 cut(s)	21, 261, 477
DinI	GGCGCC	1 cut(s)	267
DpnI	GATC	2 cut(s)	119, 438
DpnII	GATC	2 cut(s)	117, 436
DraIII	CACNNNGTG	1 cut(s)	323
Eam1104I	CTCTTC	1 cut(s)	64
EarI	CTCTTC	1 cut(s)	64
EciI	GGCGGA	1 cut(s)	480
Eco47I	GGWCC	1 cut(s)	467
Eco81I	CCTNAGG	2 cut(s)	21, 261
EcoNI	CCTNNNNNAGG	2 cut(s)	339, 405
EgeI	GGCGCC	1 cut(s)	267
EheI	GGCGCC	1 cut(s)	267
FaeI	CATG	3 cut(s)	113, 252, 391
FaiI	YATR	6 cut(s)	46, 48, 111, 168, 250, 389
FatI	CATG	3 cut(s)	109, 248, 387
FblI	GTMKAC	1 cut(s)	256
Fnu4HI	GCNGC	3 cut(s)	195, 299, 306
FokI	GGATG	2 cut(s)	162, 293
Fsp4HI	GCNGC	3 cut(s)	195, 299, 306
FspBI	CTAG	1 cut(s)	291
GlaI	GCGC	1 cut(s)	267
GluI	GCNGC	3 cut(s)	195, 299, 306
HaeII	RGCGCY	1 cut(s)	269
HapII	CCGG	1 cut(s)	302
HgaI	GACGC	1 cut(s)	297
HhaI	GCGC	1 cut(s)	268
Hin1I	GRCGYC	1 cut(s)	266
Hin1II	CATG	3 cut(s)	113, 252, 391
Hin6I	GCGC	1 cut(s)	266
HinP1I	GCGC	1 cut(s)	266
HinfI	GANTC	1 cut(s)	122
HpaII	CCGG	1 cut(s)	302
HphI	GGTGA	1 cut(s)	235
Hpy166II	GTNNAC	2 cut(s)	257, 398
Hpy188I	TCNGA	1 cut(s)	79
Hpy188III	TCNNGA	1 cut(s)	20
Hpy8I	GTNNAC	2 cut(s)	257, 398
HpyAV	CCTTC	4 cut(s)	173, 184, 220, 411
HpyCH4IV	ACGT	1 cut(s)	394
HpyCH4V	TGCA	1 cut(s)	277
HpyF10VI	GCNNNNNNNGC	3 cut(s)	191, 274, 314
HpyF3I	CTNAG	3 cut(s)	21, 261, 477
HpySE526I	ACGT	1 cut(s)	394
Hsp92I	GRCGYC	1 cut(s)	266
Hsp92II	CATG	3 cut(s)	113, 252, 391
HspAI	GCGC	1 cut(s)	266
KasI	GGCGCC	1 cut(s)	265
KroI	GCCGGC	1 cut(s)	301
KroNI	GCCGGC	1 cut(s)	303
Kzo9I	GATC	2 cut(s)	117, 436
LmnI	GCTCC	3 cut(s)	13, 79, 287
LpnPI	CCDG	7 cut(s)	33, 68, 203, 248, 263, 297, 315
Lsp1109I	GCAGC	3 cut(s)	181, 292, 310
MaeI	CTAG	1 cut(s)	291
MaeII	ACGT	1 cut(s)	394
MaeIII	GTNAC	2 cut(s)	160, 169
MalI	GATC	2 cut(s)	119, 438
MboI	GATC	2 cut(s)	117, 436
MboII	GAAGA	1 cut(s)	81
MflI	RGATCY	1 cut(s)	436
MhlI	GDGCHC	2 cut(s)	319, 455
Mly113I	GGCGCC	1 cut(s)	266
MnlI	CCTC	9 cut(s)	16, 27, 84, 140, 193, 270, 277, 345, 450
MroNI	GCCGGC	1 cut(s)	301
MroXI	GAANNNNTTC	1 cut(s)	73
MspI	CCGG	1 cut(s)	302
MwoI	GCNNNNNNNGC	3 cut(s)	191, 274, 314
NaeI	GCCGGC	1 cut(s)	303
NarI	GGCGCC	1 cut(s)	266
NdeII	GATC	2 cut(s)	117, 436
NgoMIV	GCCGGC	1 cut(s)	301
NlaIII	CATG	3 cut(s)	113, 252, 391
NlaIV	GGNNCC	4 cut(s)	15, 267, 438, 454
NmuCI	GTSAC	1 cut(s)	160
NspI	RCATGY	1 cut(s)	391
PdiI	GCCGGC	1 cut(s)	303
PdmI	GAANNNNTTC	1 cut(s)	73
PfeI	GAWTC	1 cut(s)	122
PkrI	GCNGC	3 cut(s)	196, 300, 307
PluTI	GGCGCC	1 cut(s)	269
PspN4I	GGNNCC	4 cut(s)	15, 267, 438, 454
PspPI	GGNCC	1 cut(s)	467
PsuI	RGATCY	1 cut(s)	436
RsaI	GTAC	1 cut(s)	372
RsaNI	GTAC	1 cut(s)	371
SatI	GCNGC	3 cut(s)	195, 299, 306
Sau3AI	GATC	2 cut(s)	117, 436
Sau96I	GGNCC	1 cut(s)	467
SduI	GDGCHC	2 cut(s)	319, 455
SetI	ASST	8 cut(s)	184, 219, 262, 292, 397, 403, 472, 478
SfoI	GGCGCC	1 cut(s)	267
SinI	GGWCC	1 cut(s)	467
SmlI	CTYRAG	2 cut(s)	88, 336
SmoI	CTYRAG	2 cut(s)	88, 336
SsiI	CCGC	3 cut(s)	185, 197, 465
SspDI	GGCGCC	1 cut(s)	265
SspMI	CTAG	1 cut(s)	291
TaiI	ACGT	1 cut(s)	397
TaqI	TCGA	2 cut(s)	120, 125
TatI	WGTACW	1 cut(s)	370
TfiI	GAWTC	1 cut(s)	122
TseFI	GTSAC	1 cut(s)	160
TseI	GCWGC	3 cut(s)	194, 298, 305
Tsp45I	GTSAC	1 cut(s)	160
TspDTI	ATGAA	1 cut(s)	98
VpaK11BI	GGWCC	1 cut(s)	467
XagI	CCTNNNNNAGG	2 cut(s)	339, 405
XceI	RCATGY	1 cut(s)	391
XmiI	GTMKAC	1 cut(s)	256
XmnI	GAANNNNTTC	1 cut(s)	73
XspI	CTAG	1 cut(s)	291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.