Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8408813.1

Orthogroup ID

OG0000929

Physical Location & Seq

Genomic Coordinates Reverse (-)

237 .. 1109

Gene Structure 873 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8408813.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

atgaagctactgaacaaggctggagagatgccctccctcgaacctcctgaggatgaaagcatcagaaccctatatgtgggtgggcttgatgggagaattactgagcaggatctaagggataacttttatgctcatggtgaaatagagtctgttaggatggtactccaacgagcttgtgctttcgtaacctacacaacaagagaaggtgcagaaaaggctgcagaagaactctccaataaactggtgataaagggtttgagattgaagttaatgtggggtaggccccaagcaccaaaacaggactcagagggcacagatgaagctcggcagcaggcagtggctcatagtggattgttgcctcgagcagtgatttcacaacagcagaaccaaatacaagatcaatctgcaacagtgcagcactactacaacatgccacctccaccatcttcacaggagaggacattttatccatcaatggatcctcaaagaatgggcgctgttgttcgatctcaagatggggctcctagtgggcccgcagggtctggcgagaacaaatctggttcagagaggcagcattatgcttttcaaaccatggctccaccacatggtcattatcatcatcagcagttttatcctcccccatatacagcttatatgcctctgccgccaccagcttaccaacaacaataccctccgcaatatcatgctccagtgcctccacaacagtccttgacaatgaaccaacagtaccagcagcattctgcaacacctgcagcttctacatcatcagcacccgcagcttcaagttctgggccttcagaatccacagcatctgaatctggatctgcaccaactgcgccatcacagcagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000387 GO:0000398 GO:0000974 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008380 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0017069 GO:0017070 GO:0022607 GO:0022613 GO:0022618 GO:0032991 GO:0034622 GO:0034641 GO:0036002 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0051704 GO:0051707 GO:0065003 GO:0071006 GO:0071007 GO:0071012 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:0098542 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1 Torus

Protein Analysis

290

Amino Acids

31.77

Weight (kDa)

6.05

Isoelectric Point (pI)

86.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000929)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07360 AT2G29580 AT5G04210 AT5G07060 AT5G07060
fragaria_vesca	FvH4_4g11590 FvH4_4g11590 FvH4_4g11590 FvH4_4g11590 FvH4_4g11590 FvH4_4g36530 FvH4_4g36530 FvH4_7g07370
malus_domestica	MD01G1110000.v1.1 MD07G1175800.v1.1 MD16G1006600.v1.1
prunus_persica	Prupe.2G214800_v2.0.a1 Prupe.8G143100_v2.0.a1 Prupe.8G143100_v2.0.a1 Prupe.8G143100_v2.0.a1
pyrus_communis	pycom01g13690 pycom07g17000 pycom16g00630
rosa_chinensis	RchiOBHm_Chr1g0337351 RchiOBHm_Chr4g0408701 RchiOBHm_Chr4g0446281
rosa_laevigata	RLG00000005673 RLG00000008640 RLG00000029280 RLG00000029283
rosa_multiflora	Rmu_co8341103.1_g000001 Rmu_co8350441.1_g000001 Rmu_co8408813.1_g000001 Rmu_co8519167.1_g000003 Rmu_co8522047.1_g000002 Rmu_sc0002266.1_g000007 Rmu_sc0003060.1_g000002 Rmu_sc0005878.1_g000023 Rmu_sc0021927.1_g000001
rosa_roxburghii	Rroxscaffold_4G00314450 Rroxscaffold_4G00314490 Rroxscaffold_5G00353060 Rroxscaffold_5G00386720
rosa_rugosa	Rorug01G0134600.1 Rorug01G0134800.1 Rorug04G0086900 Rorug04G0369600 Rorug04G0369600
rosa_samantha	Rh1AG153600 Rh1BG122900 Rh1BG123100 Rh1CG144600 Rh1DG161300 Rh1DG161500 Rh4AG431500 Rh4BG148400 Rh4BG440900 Rh4CG159100 Rh4CG458200 Rh4DG144000 Rh4DG439400
rosa_wichuraiana	Rw1G012580 Rw4G012370 Rw4G036850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	778
Acc36I	ACCTGC	1 cut(s)	778
AccB7I	CCANNNNNTGG	1 cut(s)	605
AciI	CCGC	4 cut(s)	534, 665, 695, 795
AclWI	GGATC	4 cut(s)	117, 473, 486, 850
AcuI	CTGAAG	1 cut(s)	801
AfaI	GTAC	2 cut(s)	162, 749
AfiI	CCNNNNNNNGG	2 cut(s)	76, 605
AgsI	TTSAA	3 cut(s)	265, 587, 804
AleI	CACNNNNGTG	1 cut(s)	868
AluBI	AGCT	7 cut(s)	7, 173, 323, 650, 674, 776, 800
AluI	AGCT	7 cut(s)	7, 173, 323, 650, 674, 776, 800
AlwI	GGATC	4 cut(s)	117, 473, 486, 850
AlwNI	CAGNNNCTG	2 cut(s)	542, 833
Ama87I	CYCGRG	1 cut(s)	360
AoxI	GGCC	3 cut(s)	281, 530, 812
ApaI	GGGCCC	1 cut(s)	534
ApeKI	GCWGC	7 cut(s)	218, 328, 415, 571, 754, 773, 797
AspLEI	GCGC	2 cut(s)	497, 859
AspS9I	GGNCC	4 cut(s)	282, 530, 531, 812
AsuHPI	GGTGA	2 cut(s)	149, 256
AvaI	CYCGRG	1 cut(s)	360
AxyI	CCTNAGG	1 cut(s)	48
BaeGI	GKGCMC	2 cut(s)	314, 534
BamHI	GGATCC	1 cut(s)	478
BanII	GRGCYC	2 cut(s)	523, 534
BbvI	GCAGC	7 cut(s)	205, 340, 427, 583, 766, 785, 809
BccI	CCATC	6 cut(s)	83, 151, 451, 478, 509, 868
BfaI	CTAG	1 cut(s)	525
BfmI	CTRYAG	2 cut(s)	219, 771
BfoI	RGCGCY	1 cut(s)	498
BfuAI	ACCTGC	1 cut(s)	778
BisI	GCNGC	8 cut(s)	219, 329, 416, 572, 665, 755, 774, 798
BlsI	GCNGC	8 cut(s)	220, 330, 417, 573, 666, 756, 775, 799
BmeT110I	CYCGRG	1 cut(s)	360
BmgT120I	GGNCC	4 cut(s)	282, 530, 531, 812
BmiI	GGNNCC	5 cut(s)	284, 480, 522, 532, 597
BmsI	GCATC	3 cut(s)	18, 69, 839
BplI	GAGNNNNNCTC	2 cut(s)	17, 49
BpmI	CTGGAG	2 cut(s)	42, 693
BpuEI	CTTGAG	1 cut(s)	495
BsaJI	CCNNGG	1 cut(s)	591
BsaXI	ACNNNNNCTCC	2 cut(s)	580, 610
Bsc4I	CCNNNNNNNGG	2 cut(s)	76, 605
Bse1I	ACTGG	2 cut(s)	246, 710
Bse21I	CCTNAGG	1 cut(s)	48
BseDI	CCNNGG	1 cut(s)	591
BseGI	GGATG	2 cut(s)	58, 162
BseLI	CCNNNNNNNGG	2 cut(s)	76, 605
BseMII	CTCAG	3 cut(s)	39, 93, 318
BseNI	ACTGG	2 cut(s)	246, 710
BseSI	GKGCMC	2 cut(s)	314, 534
BseXI	GCAGC	7 cut(s)	205, 340, 427, 583, 766, 785, 809
BsgI	GTGCAG	3 cut(s)	228, 434, 831
BshFI	GGCC	3 cut(s)	283, 532, 814
BsiHKCI	CYCGRG	1 cut(s)	360
BslI	CCNNNNNNNGG	2 cut(s)	76, 605
BsmI	GAATGC	1 cut(s)	757
BsnI	GGCC	3 cut(s)	283, 532, 814
BsoBI	CYCGRG	1 cut(s)	360
Bsp120I	GGGCCC	1 cut(s)	530
Bsp1286I	GDGCHC	3 cut(s)	314, 523, 534
Bsp143I	GATC	5 cut(s)	109, 397, 478, 506, 842
Bsp19I	CCATGG	1 cut(s)	591
BspACI	CCGC	4 cut(s)	534, 665, 695, 795
BspANI	GGCC	3 cut(s)	283, 532, 814
BspCNI	CTCAG	3 cut(s)	40, 94, 317
BspLI	GGNNCC	5 cut(s)	284, 480, 522, 532, 597
BspMAI	CTGCAG	2 cut(s)	223, 775
BspMI	ACCTGC	1 cut(s)	778
BspPI	GGATC	4 cut(s)	117, 473, 486, 850
BsrI	ACTGG	2 cut(s)	246, 710
BssECI	CCNNGG	1 cut(s)	591
BssMI	GATC	5 cut(s)	109, 397, 478, 506, 842
BssT1I	CCWWGG	1 cut(s)	591
Bst4CI	ACNGT	3 cut(s)	412, 726, 747
BstAPI	GCANNNNNTGC	2 cut(s)	770, 854
BstC8I	GCNNGC	2 cut(s)	333, 534
BstDEI	CTNAG	4 cut(s)	48, 102, 113, 304
BstDSI	CCRYGG	1 cut(s)	591
BstF5I	GGATG	2 cut(s)	58, 162
BstH2I	RGCGCY	1 cut(s)	498
BstHHI	GCGC	2 cut(s)	497, 859
BstKTI	GATC	5 cut(s)	112, 400, 481, 509, 845
BstMBI	GATC	5 cut(s)	109, 397, 478, 506, 842
BstMWI	GCNNNNNNNGC	6 cut(s)	215, 664, 770, 797, 854, 865
BstNSI	RCATGY	1 cut(s)	433
BstSFI	CTRYAG	2 cut(s)	219, 771
BstSLI	GKGCMC	2 cut(s)	314, 534
BstV1I	GCAGC	7 cut(s)	205, 340, 427, 583, 766, 785, 809
BstX2I	RGATCY	3 cut(s)	109, 478, 842
BstXI	CCANNNNNNTGG	1 cut(s)	241
BstYI	RGATCY	3 cut(s)	109, 478, 842
Bsu36I	CCTNAGG	1 cut(s)	48
BsuRI	GGCC	3 cut(s)	283, 532, 814
BtgI	CCRYGG	1 cut(s)	591
BtsCI	GGATG	2 cut(s)	58, 162
BtsI	GCAGTG	2 cut(s)	342, 372
BtsIMutI	CAGTG	4 cut(s)	342, 372, 417, 717
BveI	ACCTGC	1 cut(s)	778
Cac8I	GCNNGC	2 cut(s)	333, 534
CaiI	CAGNNNCTG	2 cut(s)	542, 833
CfoI	GCGC	2 cut(s)	497, 859
Cfr13I	GGNCC	4 cut(s)	282, 530, 531, 812
Csp6I	GTAC	2 cut(s)	161, 748
CviAII	CATG	5 cut(s)	134, 430, 592, 605, 704
CviQI	GTAC	2 cut(s)	161, 748
DdeI	CTNAG	4 cut(s)	48, 102, 113, 304
DpnI	GATC	5 cut(s)	111, 399, 480, 508, 844
DpnII	GATC	5 cut(s)	109, 397, 478, 506, 842
Eco130I	CCWWGG	1 cut(s)	591
Eco24I	GRGCYC	2 cut(s)	523, 534
Eco57I	CTGAAG	1 cut(s)	801
Eco81I	CCTNAGG	1 cut(s)	48
Eco88I	CYCGRG	1 cut(s)	360
EcoO109I	RGGNCCY	1 cut(s)	282
EcoT14I	CCWWGG	1 cut(s)	591
EcoT38I	GRGCYC	2 cut(s)	523, 534
ErhI	CCWWGG	1 cut(s)	591
FaeI	CATG	5 cut(s)	137, 433, 595, 608, 707
FatI	CATG	5 cut(s)	133, 429, 591, 604, 703
FauI	CCCGC	2 cut(s)	541, 802
Fnu4HI	GCNGC	8 cut(s)	219, 329, 416, 572, 665, 755, 774, 798
FokI	GGATG	2 cut(s)	65, 169
FriOI	GRGCYC	2 cut(s)	523, 534
Fsp4HI	GCNGC	8 cut(s)	219, 329, 416, 572, 665, 755, 774, 798
FspBI	CTAG	1 cut(s)	525
GlaI	GCGC	2 cut(s)	496, 858
GluI	GCNGC	8 cut(s)	219, 329, 416, 572, 665, 755, 774, 798
GsuI	CTGGAG	2 cut(s)	42, 693
HaeII	RGCGCY	1 cut(s)	498
HaeIII	GGCC	3 cut(s)	283, 532, 814
HhaI	GCGC	2 cut(s)	497, 859
Hin1II	CATG	5 cut(s)	137, 433, 595, 608, 707
Hin6I	GCGC	2 cut(s)	495, 857
HinP1I	GCGC	2 cut(s)	495, 857
HinfI	GANTC	4 cut(s)	146, 302, 821, 836
HphI	GGTGA	2 cut(s)	149, 256
Hpy188I	TCNGA	5 cut(s)	65, 307, 565, 820, 835
Hpy188III	TCNNGA	3 cut(s)	47, 512, 840
HpyAV	CCTTC	2 cut(s)	197, 825
HpyCH4III	ACNGT	3 cut(s)	412, 726, 747
HpyCH4V	TGCA	7 cut(s)	209, 221, 407, 415, 764, 773, 848
HpyF10VI	GCNNNNNNNGC	6 cut(s)	215, 664, 770, 797, 854, 865
HpyF3I	CTNAG	4 cut(s)	48, 102, 113, 304
Hsp92II	CATG	5 cut(s)	137, 433, 595, 608, 707
HspAI	GCGC	2 cut(s)	495, 857
Kzo9I	GATC	5 cut(s)	109, 397, 478, 506, 842
LmnI	GCTCC	3 cut(s)	526, 601, 712
Lsp1109I	GCAGC	7 cut(s)	205, 340, 427, 583, 766, 785, 809
LweI	GCATC	3 cut(s)	18, 69, 839
MaeI	CTAG	1 cut(s)	525
MaeIII	GTNAC	1 cut(s)	184
MalI	GATC	5 cut(s)	111, 399, 480, 508, 844
MboI	GATC	5 cut(s)	109, 397, 478, 506, 842
MboII	GAAGA	2 cut(s)	236, 438
MflI	RGATCY	3 cut(s)	109, 478, 842
MhlI	GDGCHC	3 cut(s)	314, 523, 534
MluCI	AATT	1 cut(s)	96
MlyI	GAGTC	2 cut(s)	155, 296
MmeI	TCCRAC	1 cut(s)	190
MseI	TTAA	1 cut(s)	269
MslI	CAYNNNNRTG	1 cut(s)	868
Mva1269I	GAATGC	1 cut(s)	757
MwoI	GCNNNNNNNGC	6 cut(s)	215, 664, 770, 797, 854, 865
NcoI	CCATGG	1 cut(s)	591
NdeII	GATC	5 cut(s)	109, 397, 478, 506, 842
NlaIII	CATG	5 cut(s)	137, 433, 595, 608, 707
NlaIV	GGNNCC	5 cut(s)	284, 480, 522, 532, 597
NmeAIII	GCCGAG	1 cut(s)	304
NspI	RCATGY	1 cut(s)	433
OliI	CACNNNNGTG	1 cut(s)	868
PaeR7I	CTCGAG	1 cut(s)	360
PaqCI	CACCTGC	1 cut(s)	778
PctI	GAATGC	1 cut(s)	757
PfeI	GAWTC	2 cut(s)	821, 836
PflMI	CCANNNNNTGG	1 cut(s)	605
PkrI	GCNGC	8 cut(s)	220, 330, 417, 573, 666, 756, 775, 799
PleI	GAGTC	2 cut(s)	154, 296
PpsI	GAGTC	2 cut(s)	154, 296
PspN4I	GGNNCC	5 cut(s)	284, 480, 522, 532, 597
PspOMI	GGGCCC	1 cut(s)	530
PspPI	GGNCC	4 cut(s)	282, 530, 531, 812
PspXI	VCTCGAGB	1 cut(s)	360
PsrI	GAACNNNNNNTAC	2 cut(s)	731, 763
PstI	CTGCAG	2 cut(s)	223, 775
PstNI	CAGNNNCTG	2 cut(s)	542, 833
PsuI	RGATCY	3 cut(s)	109, 478, 842
RsaI	GTAC	2 cut(s)	162, 749
RsaNI	GTAC	2 cut(s)	161, 748
RseI	CAYNNNNRTG	1 cut(s)	868
SaqAI	TTAA	1 cut(s)	269
SatI	GCNGC	8 cut(s)	219, 329, 416, 572, 665, 755, 774, 798
Sau3AI	GATC	5 cut(s)	109, 397, 478, 506, 842
Sau96I	GGNCC	4 cut(s)	282, 530, 531, 812
SchI	GAGTC	2 cut(s)	155, 296
SduI	GDGCHC	3 cut(s)	314, 523, 534
SfaNI	GCATC	3 cut(s)	18, 69, 839
SfcI	CTRYAG	2 cut(s)	219, 771
Sfr274I	CTCGAG	1 cut(s)	360
SlaI	CTCGAG	1 cut(s)	360
SmiMI	CAYNNNNRTG	1 cut(s)	868
SmlI	CTYRAG	2 cut(s)	360, 510
SmoI	CTYRAG	2 cut(s)	360, 510
Sse9I	AATT	1 cut(s)	96
SsiI	CCGC	4 cut(s)	534, 665, 695, 795
SspMI	CTAG	1 cut(s)	525
StyI	CCWWGG	1 cut(s)	591
TaaI	ACNGT	3 cut(s)	412, 726, 747
TaqI	TCGA	3 cut(s)	39, 361, 505
TasI	AATT	1 cut(s)	96
TauI	GCSGC	1 cut(s)	667
TfiI	GAWTC	2 cut(s)	821, 836
Tru1I	TTAA	1 cut(s)	269
Tru9I	TTAA	1 cut(s)	269
TscAI	CASTG	4 cut(s)	342, 372, 417, 717
TseI	GCWGC	7 cut(s)	218, 328, 415, 571, 754, 773, 797
TspDTI	ATGAA	4 cut(s)	17, 69, 333, 752
TspRI	CASTG	4 cut(s)	342, 372, 417, 717
Van91I	CCANNNNNTGG	1 cut(s)	605
XceI	RCATGY	1 cut(s)	433
XhoI	CTCGAG	1 cut(s)	360
XspI	CTAG	1 cut(s)	525

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.