Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8341103.1

Orthogroup ID

OG0000929

Physical Location & Seq

Genomic Coordinates Forward (+)

227 .. 880

Gene Structure 654 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8341103.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

atggcgcacaggttgctcaggaatgtggaggcagatggttgggaacggtcagacttccccatcatctgcgagtcgtgcctgggagacaatccctatgttcgcatgacgaaagctgattatgacaaggagtgcaagacttgtactcggccgttcaccgttttccggtggaggcctggccgtgatgcccgattcaagaagacggagatttgccagacgtgcagtaagttgaagaatgtctgtcaagtttgcatcttggacctggaatatggtttgccagtacaggttcgagacactgctatggctatcaactccactgatgtgattcccaagagcgatgtcaatagggagttttttgccgaggagcatgaccgaaaggctagagccgagcacatgtatgcagtttctacattcgaggtgagtgcacaagaggcgctgagtgcccttacaggcatgaaatgcccataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000387 GO:0000398 GO:0000974 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008380 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0017069 GO:0017070 GO:0022607 GO:0022613 GO:0022618 GO:0032991 GO:0034622 GO:0034641 GO:0036002 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0051704 GO:0051707 GO:0065003 GO:0071006 GO:0071007 GO:0071012 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:0098542 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1 Torus

Protein Analysis

154

Amino Acids

17.66

Weight (kDa)

6.81

Isoelectric Point (pI)

41.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000929)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07360 AT2G29580 AT5G04210 AT5G07060 AT5G07060
fragaria_vesca	FvH4_4g11590 FvH4_4g11590 FvH4_4g11590 FvH4_4g11590 FvH4_4g11590 FvH4_4g36530 FvH4_4g36530 FvH4_7g07370
malus_domestica	MD01G1110000.v1.1 MD07G1175800.v1.1 MD16G1006600.v1.1
prunus_persica	Prupe.2G214800_v2.0.a1 Prupe.8G143100_v2.0.a1 Prupe.8G143100_v2.0.a1 Prupe.8G143100_v2.0.a1
pyrus_communis	pycom01g13690 pycom07g17000 pycom16g00630
rosa_chinensis	RchiOBHm_Chr1g0337351 RchiOBHm_Chr4g0408701 RchiOBHm_Chr4g0446281
rosa_laevigata	RLG00000005673 RLG00000008640 RLG00000029280 RLG00000029283
rosa_multiflora	Rmu_co8341103.1_g000001 Rmu_co8350441.1_g000001 Rmu_co8408813.1_g000001 Rmu_co8519167.1_g000003 Rmu_co8522047.1_g000002 Rmu_sc0002266.1_g000007 Rmu_sc0003060.1_g000002 Rmu_sc0005878.1_g000023 Rmu_sc0021927.1_g000001
rosa_roxburghii	Rroxscaffold_4G00314450 Rroxscaffold_4G00314490 Rroxscaffold_5G00353060 Rroxscaffold_5G00386720
rosa_rugosa	Rorug01G0134600.1 Rorug01G0134800.1 Rorug04G0086900 Rorug04G0369600 Rorug04G0369600
rosa_samantha	Rh1AG153600 Rh1BG122900 Rh1BG123100 Rh1CG144600 Rh1DG161300 Rh1DG161500 Rh4AG431500 Rh4BG148400 Rh4BG440900 Rh4CG159100 Rh4CG458200 Rh4DG144000 Rh4DG439400
rosa_wichuraiana	Rw1G012580 Rw4G012370 Rw4G036850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	2 cut(s)	146, 175
AfaI	GTAC	2 cut(s)	142, 279
AfiI	CCNNNNNNNGG	1 cut(s)	162
AflIII	ACRYGT	1 cut(s)	390
AgsI	TTSAA	2 cut(s)	193, 229
AjiI	CACGTC	1 cut(s)	216
AjnI	CCWGG	3 cut(s)	78, 172, 258
AleI	CACNNNNGTG	1 cut(s)	317
AluBI	AGCT	1 cut(s)	113
AluI	AGCT	1 cut(s)	113
Alw21I	GWGCWC	2 cut(s)	390, 424
Alw26I	GTCTC	2 cut(s)	78, 282
Alw44I	GTGCAC	1 cut(s)	420
AoxI	GGCC	3 cut(s)	146, 170, 175
ApaLI	GTGCAC	1 cut(s)	420
AspLEI	GCGC	2 cut(s)	7, 433
AspS9I	GGNCC	1 cut(s)	256
AsuHPI	GGTGA	2 cut(s)	145, 427
AvaII	GGWCC	1 cut(s)	256
BaeGI	GKGCMC	2 cut(s)	424, 442
BbsI	GAAGAC	1 cut(s)	203
Bbv12I	GWGCWC	2 cut(s)	390, 424
BccI	CCATC	2 cut(s)	29, 68
BceAI	ACGGC	2 cut(s)	133, 162
BcgI	CGANNNNNNTGC	2 cut(s)	401, 435
BciT130I	CCWGG	3 cut(s)	80, 174, 260
BcoDI	GTCTC	2 cut(s)	78, 282
BfaI	CTAG	1 cut(s)	378
BfoI	RGCGCY	1 cut(s)	434
Bme1390I	CCNGG	3 cut(s)	80, 174, 260
Bme18I	GGWCC	1 cut(s)	256
BmgBI	CACGTC	1 cut(s)	216
BmgT120I	GGNCC	1 cut(s)	256
BmrFI	CCNGG	3 cut(s)	80, 174, 260
BmsI	GCATC	2 cut(s)	172, 258
BpiI	GAAGAC	1 cut(s)	203
Bpu10I	CCTNAGC	1 cut(s)	17
BsaJI	CCNNGG	2 cut(s)	79, 357
BsaWI	WCCGGW	1 cut(s)	162
Bsc4I	CCNNNNNNNGG	1 cut(s)	162
Bse1I	ACTGG	1 cut(s)	275
BseBI	CCWGG	3 cut(s)	80, 174, 260
BseDI	CCNNGG	2 cut(s)	79, 357
BseLI	CCNNNNNNNGG	1 cut(s)	162
BseMII	CTCAG	2 cut(s)	31, 425
BseNI	ACTGG	1 cut(s)	275
BseRI	GAGGAG	1 cut(s)	374
BseSI	GKGCMC	2 cut(s)	424, 442
BseX3I	CGGCCG	1 cut(s)	146
BsgI	GTGCAG	1 cut(s)	238
Bsh1285I	CGRYCG	1 cut(s)	149
BshFI	GGCC	3 cut(s)	148, 172, 177
BsiEI	CGRYCG	1 cut(s)	149
BsiHKAI	GWGCWC	2 cut(s)	390, 424
BsiSI	CCGG	1 cut(s)	163
BslI	CCNNNNNNNGG	1 cut(s)	162
BsmAI	GTCTC	2 cut(s)	78, 282
BsnI	GGCC	3 cut(s)	148, 172, 177
Bsp1286I	GDGCHC	3 cut(s)	390, 424, 442
BspANI	GGCC	3 cut(s)	148, 172, 177
BspCNI	CTCAG	2 cut(s)	30, 426
BsrI	ACTGG	1 cut(s)	275
BssECI	CCNNGG	2 cut(s)	79, 357
Bst2UI	CCWGG	3 cut(s)	80, 174, 260
Bst4CI	ACNGT	2 cut(s)	48, 157
BstAPI	GCANNNNNTGC	2 cut(s)	13, 456
BstDEI	CTNAG	2 cut(s)	17, 434
BstH2I	RGCGCY	1 cut(s)	434
BstHHI	GCGC	2 cut(s)	7, 433
BstMAI	GTCTC	2 cut(s)	78, 282
BstMCI	CGRYCG	1 cut(s)	149
BstMWI	GCNNNNNNNGC	6 cut(s)	13, 75, 216, 428, 437, 456
BstNI	CCWGG	3 cut(s)	80, 174, 260
BstNSI	RCATGY	1 cut(s)	394
BstSCI	CCNGG	3 cut(s)	78, 172, 258
BstSLI	GKGCMC	2 cut(s)	424, 442
BstV2I	GAAGAC	1 cut(s)	203
BstZI	CGGCCG	1 cut(s)	146
BsuRI	GGCC	3 cut(s)	148, 172, 177
BtgZI	GCGATG	1 cut(s)	348
BtrI	CACGTC	1 cut(s)	216
BtsI	GCAGTG	1 cut(s)	291
BtsIMutI	CAGTG	2 cut(s)	291, 312
CfoI	GCGC	2 cut(s)	7, 433
Cfr13I	GGNCC	1 cut(s)	256
Csp6I	GTAC	2 cut(s)	141, 278
CviAII	CATG	4 cut(s)	103, 365, 391, 451
CviJI	RGCY	7 cut(s)	113, 148, 172, 177, 302, 377, 383
CviKI_1	RGCY	7 cut(s)	113, 148, 172, 177, 302, 377, 383
CviQI	GTAC	2 cut(s)	141, 278
DdeI	CTNAG	2 cut(s)	17, 434
EaeI	YGGCCR	2 cut(s)	146, 175
EagI	CGGCCG	1 cut(s)	146
EclXI	CGGCCG	1 cut(s)	146
Eco147I	AGGCCT	1 cut(s)	172
Eco47I	GGWCC	1 cut(s)	256
Eco52I	CGGCCG	1 cut(s)	146
EcoRII	CCWGG	3 cut(s)	78, 172, 258
FaeI	CATG	4 cut(s)	106, 368, 394, 454
FatI	CATG	4 cut(s)	102, 364, 390, 450
FspBI	CTAG	1 cut(s)	378
GlaI	GCGC	2 cut(s)	6, 432
HaeII	RGCGCY	1 cut(s)	434
HaeIII	GGCC	3 cut(s)	148, 172, 177
HapII	CCGG	1 cut(s)	163
HhaI	GCGC	2 cut(s)	7, 433
Hin1II	CATG	4 cut(s)	106, 368, 394, 454
Hin6I	GCGC	2 cut(s)	5, 431
HinP1I	GCGC	2 cut(s)	5, 431
HinfI	GANTC	3 cut(s)	71, 189, 322
HpaII	CCGG	1 cut(s)	163
HphI	GGTGA	2 cut(s)	145, 427
Hpy166II	GTNNAC	2 cut(s)	153, 422
Hpy188I	TCNGA	1 cut(s)	52
Hpy188III	TCNNGA	3 cut(s)	19, 193, 287
Hpy8I	GTNNAC	2 cut(s)	153, 422
HpyCH4III	ACNGT	2 cut(s)	48, 157
HpyCH4IV	ACGT	1 cut(s)	215
HpyCH4V	TGCA	5 cut(s)	132, 219, 249, 398, 422
HpyF10VI	GCNNNNNNNGC	6 cut(s)	13, 75, 216, 428, 437, 456
HpyF3I	CTNAG	2 cut(s)	17, 434
HpySE526I	ACGT	1 cut(s)	215
Hsp92II	CATG	4 cut(s)	106, 368, 394, 454
HspAI	GCGC	2 cut(s)	5, 431
LmnI	GCTCC	1 cut(s)	361
LweI	GCATC	2 cut(s)	172, 258
MaeI	CTAG	1 cut(s)	378
MaeII	ACGT	1 cut(s)	215
MboII	GAAGA	2 cut(s)	208, 241
MhlI	GDGCHC	3 cut(s)	390, 424, 442
MlyI	GAGTC	1 cut(s)	80
MnlI	CCTC	5 cut(s)	22, 162, 352, 406, 421
MslI	CAYNNNNRTG	3 cut(s)	296, 317, 393
MspI	CCGG	1 cut(s)	163
MspR9I	CCNGG	3 cut(s)	80, 174, 260
MvaI	CCWGG	3 cut(s)	80, 174, 260
MwoI	GCNNNNNNNGC	6 cut(s)	13, 75, 216, 428, 437, 456
NlaIII	CATG	4 cut(s)	106, 368, 394, 454
NmeAIII	GCCGAG	3 cut(s)	124, 382, 409
NspI	RCATGY	1 cut(s)	394
OliI	CACNNNNGTG	1 cut(s)	317
PceI	AGGCCT	1 cut(s)	172
PciI	ACATGT	1 cut(s)	390
PfeI	GAWTC	2 cut(s)	189, 322
PleI	GAGTC	1 cut(s)	79
PpsI	GAGTC	1 cut(s)	79
PscI	ACATGT	1 cut(s)	390
Psp6I	CCWGG	3 cut(s)	78, 172, 258
PspGI	CCWGG	3 cut(s)	78, 172, 258
PspPI	GGNCC	1 cut(s)	256
RsaI	GTAC	2 cut(s)	142, 279
RsaNI	GTAC	2 cut(s)	141, 278
RseI	CAYNNNNRTG	3 cut(s)	296, 317, 393
Sau96I	GGNCC	1 cut(s)	256
SchI	GAGTC	1 cut(s)	80
ScrFI	CCNGG	3 cut(s)	80, 174, 260
SduI	GDGCHC	3 cut(s)	390, 424, 442
SetI	ASST	6 cut(s)	14, 115, 218, 261, 285, 417
SfaNI	GCATC	2 cut(s)	172, 258
SinI	GGWCC	1 cut(s)	256
SmiMI	CAYNNNNRTG	3 cut(s)	296, 317, 393
SseBI	AGGCCT	1 cut(s)	172
SspMI	CTAG	1 cut(s)	378
StuI	AGGCCT	1 cut(s)	172
StyD4I	CCNGG	3 cut(s)	78, 172, 258
TaaI	ACNGT	2 cut(s)	48, 157
TaiI	ACGT	1 cut(s)	218
TaqI	TCGA	2 cut(s)	286, 411
TaqII	GACCGA	1 cut(s)	384
TatI	WGTACW	2 cut(s)	140, 277
TfiI	GAWTC	2 cut(s)	189, 322
TscAI	CASTG	2 cut(s)	298, 319
TspGWI	ACGGA	1 cut(s)	215
TspRI	CASTG	2 cut(s)	298, 319
VneI	GTGCAC	1 cut(s)	420
VpaK11BI	GGWCC	1 cut(s)	256
XceI	RCATGY	1 cut(s)	394
XspI	CTAG	1 cut(s)	378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.