Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000929

Physical Location & Seq

Genomic Coordinates Reverse (-)

2193966 .. 2195963

Gene Structure 1998 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G07060.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGTCTCACAGGGATCATGGAGCCGATGGATGGGAAAGCGCCGATTTCCCAATCACCTGCGAATCTTGCTTCGGTGACAATCCGTACATGCGAATGACCCGAGCGGATTATGATAAGGAATGCAAGATATGTAGTCGTCCTTTCACAGCTTTTAGGTGGCGACCAGGCCGGAATGCTAGATTCAAGAAAACCGAGATTTGTCAAACTTGCTCTAAGCTAAAAAATGTATGCCAAGTCTGTCTTCTGGATCTCGGTTTTGGTCTTCCTGTTCAGGTCAGAGACTCAGCACTCAATATTAATTCTCACTACTCTGTCCCAATGAGCCATGTCAACAGAGAGTACTTTGCTGACGAGCATGACCCAAAGACTAGAGCTGGACTGGATTATGAATCTTCATTTGGGAAGATGCAACCTAATGATACTATTTTAAAGCTTCAGAGAAGAACACCTTCCTATGAAAAGAACCGGCCAAAAATTTGTAGTTTCTACACCATTGGTCAGTGTAAAAGAGGTGCCGAATGTTCATTCCGGCATGAGATGCCCGAAACAGGAGAGCTATCCCATCAAAACATAAGAGATCGTTATTATAGTGTAAATGATCCAGTCGCGATGAAGTTACTCAGAAAAGCTGGTGAGATGGGCACTTTGGAACCACCAGAGGATGAAAGCATCAAAACACTTTACGTCGGTGGACTTAACTCAAGAATCTTTGAGCAGGACATACATGACCACTTCTACGCTTATGGAGAAATGGAATCTATCAGAGTCATGGCCGAGGATGGCAAATATGATCAAAGTGGTTCAAACCAACAGCAACAGGGCAGTATCGCTCATACTGGATTAATATCTCAGCAGCAGAATCAACACTCACAAATGCAGCAGTACTATATGCAGCCACCACCACCTAACGAATACAGTCATTACCCATCAATGGACACGCAGAGAATGGGTGCAGCCTTTTCAACCCAAGAGAGTGATGGTTCAAGCACCAGTGAGAACAACAGAGCTTATTCTTCTTACTCTTACCCGATGCCACCACACCAGCCGTACCCCACACCACCACCATATATAGATATATATATATATATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000387 GO:0000398 GO:0000974 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008380 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0017069 GO:0017070 GO:0022607 GO:0022613 GO:0022618 GO:0032991 GO:0034622 GO:0034641 GO:0036002 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0051704 GO:0051707 GO:0065003 GO:0071006 GO:0071007 GO:0071012 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:0098542 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1 Torus

Protein Analysis

363

Amino Acids

41.75

Weight (kDa)

6.12

Isoelectric Point (pI)

55.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
STL11_N	PF21369	17 - 102	3.3e-27	STL11, N-terminal
Torus	PF16131	149 - 190	9.4e-06	Torus domain
zf-CCCH_RBM22	PF25584	154 - 179	2.3e-08	RBM22 CCCH zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000929)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07360 AT2G29580 AT5G04210 AT5G07060 AT5G07060
fragaria_vesca	FvH4_4g11590 FvH4_4g11590 FvH4_4g11590 FvH4_4g11590 FvH4_4g11590 FvH4_4g36530 FvH4_4g36530 FvH4_7g07370
malus_domestica	MD01G1110000.v1.1 MD07G1175800.v1.1 MD16G1006600.v1.1
prunus_persica	Prupe.2G214800_v2.0.a1 Prupe.8G143100_v2.0.a1 Prupe.8G143100_v2.0.a1 Prupe.8G143100_v2.0.a1
pyrus_communis	pycom01g13690 pycom07g17000 pycom16g00630
rosa_chinensis	RchiOBHm_Chr1g0337351 RchiOBHm_Chr4g0408701 RchiOBHm_Chr4g0446281
rosa_laevigata	RLG00000005673 RLG00000008640 RLG00000029280 RLG00000029283
rosa_multiflora	Rmu_co8341103.1_g000001 Rmu_co8350441.1_g000001 Rmu_co8408813.1_g000001 Rmu_co8519167.1_g000003 Rmu_co8522047.1_g000002 Rmu_sc0002266.1_g000007 Rmu_sc0003060.1_g000002 Rmu_sc0005878.1_g000023 Rmu_sc0021927.1_g000001
rosa_roxburghii	Rroxscaffold_4G00314450 Rroxscaffold_4G00314490 Rroxscaffold_5G00353060 Rroxscaffold_5G00386720
rosa_rugosa	Rorug01G0134600.1 Rorug01G0134800.1 Rorug04G0086900 Rorug04G0369600 Rorug04G0369600
rosa_samantha	Rh1AG153600 Rh1BG122900 Rh1BG123100 Rh1CG144600 Rh1DG161300 Rh1DG161500 Rh4AG431500 Rh4BG148400 Rh4BG440900 Rh4CG159100 Rh4CG458200 Rh4DG144000 Rh4DG439400
rosa_wichuraiana	Rw1G012580 Rw4G012370 Rw4G036850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	65
Acc36I	ACCTGC	1 cut(s)	65
AccB1I	GGYRCC	1 cut(s)	512
AccBSI	CCGCTC	1 cut(s)	104
AccII	CGCG	1 cut(s)	608
AciI	CCGC	1 cut(s)	104
AclWI	GGATC	3 cut(s)	21, 255, 593
AcoI	YGGCCR	2 cut(s)	467, 771
AcsI	RAATTY	1 cut(s)	474
AcuI	CTGAAG	1 cut(s)	419
AfaI	GTAC	4 cut(s)	86, 341, 884, 1049
AfiI	CCNNNNNNNGG	3 cut(s)	30, 548, 931
AgsI	TTSAA	4 cut(s)	184, 804, 963, 984
AjnI	CCWGG	1 cut(s)	163
AjuI	GAANNNNNNNTTGG	4 cut(s)	225, 257, 381, 413
AluBI	AGCT	7 cut(s)	149, 217, 374, 433, 556, 629, 1007
AluI	AGCT	7 cut(s)	149, 217, 374, 433, 556, 629, 1007
Alw26I	GTCTC	2 cut(s)	9, 273
AlwI	GGATC	3 cut(s)	21, 255, 593
Ama87I	CYCGRG	1 cut(s)	99
AoxI	GGCC	3 cut(s)	166, 467, 771
ApeKI	GCWGC	4 cut(s)	853, 877, 892, 953
ApoI	RAATTY	1 cut(s)	474
AseI	ATTAAT	2 cut(s)	297, 842
Asp700I	GAANNNNTTC	1 cut(s)	448
AspLEI	GCGC	1 cut(s)	41
AsuHPI	GGTGA	3 cut(s)	46, 86, 644
AvaI	CYCGRG	1 cut(s)	99
BaeGI	GKGCMC	1 cut(s)	644
BanI	GGYRCC	1 cut(s)	512
BbsI	GAAGAC	2 cut(s)	233, 254
BbvI	GCAGC	4 cut(s)	865, 889, 904, 965
BccI	CCATC	7 cut(s)	20, 24, 570, 631, 773, 934, 971
BceAI	ACGGC	1 cut(s)	1030
BciT130I	CCWGG	1 cut(s)	165
BclI	TGATCA	1 cut(s)	790
BcoDI	GTCTC	2 cut(s)	9, 273
BfaI	CTAG	2 cut(s)	177, 369
BfoI	RGCGCY	1 cut(s)	42
BfuAI	ACCTGC	1 cut(s)	65
BisI	GCNGC	4 cut(s)	854, 878, 893, 954
BlsI	GCNGC	4 cut(s)	855, 879, 894, 955
BmcAI	AGTACT	2 cut(s)	341, 884
Bme1390I	CCNGG	1 cut(s)	165
BmeT110I	CYCGRG	1 cut(s)	99
BmiI	GGNNCC	3 cut(s)	22, 514, 651
BmrFI	CCNGG	1 cut(s)	165
BmsI	GCATC	4 cut(s)	396, 528, 678, 1020
BpiI	GAAGAC	2 cut(s)	233, 254
BpuEI	CTTGAG	1 cut(s)	685
BsaBI	GATNNNNATC	1 cut(s)	844
BsaJI	CCNNGG	1 cut(s)	774
Bsc4I	CCNNNNNNNGG	3 cut(s)	30, 548, 931
Bse118I	RCCGGY	1 cut(s)	465
Bse1I	ACTGG	4 cut(s)	384, 602, 841, 990
Bse8I	GATNNNNATC	1 cut(s)	844
BseBI	CCWGG	1 cut(s)	165
BseDI	CCNNGG	1 cut(s)	774
BseGI	GGATG	3 cut(s)	35, 667, 784
BseJI	GATNNNNATC	1 cut(s)	844
BseLI	CCNNNNNNNGG	3 cut(s)	30, 548, 931
BseMII	CTCAG	3 cut(s)	297, 634, 863
BseNI	ACTGG	4 cut(s)	384, 602, 841, 990
BseSI	GKGCMC	1 cut(s)	644
BseXI	GCAGC	4 cut(s)	865, 889, 904, 965
BsgI	GTGCAG	1 cut(s)	972
Bsh1236I	CGCG	1 cut(s)	608
BshFI	GGCC	3 cut(s)	168, 469, 773
BshNI	GGYRCC	1 cut(s)	512
BsiHKCI	CYCGRG	1 cut(s)	99
BsiSI	CCGG	3 cut(s)	169, 466, 529
BslFI	GGGAC	1 cut(s)	299
BslI	CCNNNNNNNGG	3 cut(s)	30, 548, 931
BsmAI	GTCTC	2 cut(s)	9, 273
BsmFI	GGGAC	1 cut(s)	299
BsmI	GAATGC	2 cut(s)	125, 178
BsnI	GGCC	3 cut(s)	168, 469, 773
BsoBI	CYCGRG	1 cut(s)	99
Bsp1286I	GDGCHC	1 cut(s)	644
Bsp143I	GATC	5 cut(s)	13, 247, 577, 598, 790
Bsp68I	TCGCGA	1 cut(s)	608
BspACI	CCGC	1 cut(s)	104
BspANI	GGCC	3 cut(s)	168, 469, 773
BspCNI	CTCAG	3 cut(s)	296, 633, 862
BspFNI	CGCG	1 cut(s)	608
BspLI	GGNNCC	3 cut(s)	22, 514, 651
BspMI	ACCTGC	1 cut(s)	65
BspPI	GGATC	3 cut(s)	21, 255, 593
BspT107I	GGYRCC	1 cut(s)	512
BsrBI	CCGCTC	1 cut(s)	104
BsrFI	RCCGGY	1 cut(s)	465
BsrI	ACTGG	4 cut(s)	384, 602, 841, 990
BssAI	RCCGGY	1 cut(s)	465
BssECI	CCNNGG	1 cut(s)	774
BssMI	GATC	5 cut(s)	13, 247, 577, 598, 790
Bst2UI	CCWGG	1 cut(s)	165
Bst4CI	ACNGT	1 cut(s)	917
BstAPI	GCANNNNNTGC	1 cut(s)	538
BstDEI	CTNAG	4 cut(s)	213, 283, 620, 849
BstF5I	GGATG	3 cut(s)	35, 667, 784
BstFNI	CGCG	1 cut(s)	608
BstH2I	RGCGCY	1 cut(s)	42
BstHHI	GCGC	1 cut(s)	41
BstKTI	GATC	5 cut(s)	16, 250, 580, 601, 793
BstMAI	GTCTC	2 cut(s)	9, 273
BstMBI	GATC	5 cut(s)	13, 247, 577, 598, 790
BstMWI	GCNNNNNNNGC	2 cut(s)	66, 538
BstNI	CCWGG	1 cut(s)	165
BstNSI	RCATGY	1 cut(s)	91
BstSCI	CCNGG	1 cut(s)	163
BstSLI	GKGCMC	1 cut(s)	644
BstUI	CGCG	1 cut(s)	608
BstV1I	GCAGC	4 cut(s)	865, 889, 904, 965
BstV2I	GAAGAC	2 cut(s)	233, 254
BstX2I	RGATCY	1 cut(s)	247
BstYI	RGATCY	1 cut(s)	247
BsuRI	GGCC	3 cut(s)	168, 469, 773
BtgZI	GCGATG	1 cut(s)	623
BtsCI	GGATG	3 cut(s)	35, 667, 784
BtsIMutI	CAGTG	2 cut(s)	506, 997
BtuMI	TCGCGA	1 cut(s)	608
BveI	ACCTGC	1 cut(s)	65
CfoI	GCGC	1 cut(s)	41
Cfr10I	RCCGGY	1 cut(s)	465
Csp6I	GTAC	4 cut(s)	85, 340, 883, 1048
CviAII	CATG	7 cut(s)	17, 88, 326, 356, 533, 725, 769
CviQI	GTAC	4 cut(s)	85, 340, 883, 1048
DdeI	CTNAG	4 cut(s)	213, 283, 620, 849
DpnI	GATC	5 cut(s)	15, 249, 579, 600, 792
DpnII	GATC	5 cut(s)	13, 247, 577, 598, 790
DraI	TTTAAA	1 cut(s)	429
EaeI	YGGCCR	2 cut(s)	467, 771
Eco57I	CTGAAG	1 cut(s)	419
Eco88I	CYCGRG	1 cut(s)	99
EcoRII	CCWGG	1 cut(s)	163
FaeI	CATG	7 cut(s)	20, 91, 329, 359, 536, 728, 772
FalI	AAGNNNNNCTT	4 cut(s)	225, 257, 433, 465
FaqI	GGGAC	1 cut(s)	299
FatI	CATG	7 cut(s)	16, 87, 325, 355, 532, 724, 768
FbaI	TGATCA	1 cut(s)	790
Fnu4HI	GCNGC	4 cut(s)	854, 878, 893, 954
FokI	GGATG	3 cut(s)	42, 674, 791
Fsp4HI	GCNGC	4 cut(s)	854, 878, 893, 954
FspBI	CTAG	2 cut(s)	177, 369
GlaI	GCGC	1 cut(s)	40
GluI	GCNGC	4 cut(s)	854, 878, 893, 954
HaeII	RGCGCY	1 cut(s)	42
HaeIII	GGCC	3 cut(s)	168, 469, 773
HapII	CCGG	3 cut(s)	169, 466, 529
HhaI	GCGC	1 cut(s)	41
Hin1II	CATG	7 cut(s)	20, 91, 329, 359, 536, 728, 772
Hin6I	GCGC	1 cut(s)	39
HinP1I	GCGC	1 cut(s)	39
HincII	GTYRAC	1 cut(s)	331
HindII	GTYRAC	1 cut(s)	331
HindIII	AAGCTT	1 cut(s)	431
HinfI	GANTC	8 cut(s)	62, 180, 281, 389, 705, 755, 765, 859
HpaII	CCGG	3 cut(s)	169, 466, 529
HphI	GGTGA	3 cut(s)	46, 86, 644
Hpy166II	GTNNAC	2 cut(s)	331, 692
Hpy188I	TCNGA	4 cut(s)	278, 438, 623, 764
Hpy188III	TCNNGA	4 cut(s)	184, 245, 607, 702
Hpy8I	GTNNAC	2 cut(s)	331, 692
Hpy99I	CGWCG	1 cut(s)	689
HpyAV	CCTTC	1 cut(s)	459
HpyCH4III	ACNGT	1 cut(s)	917
HpyCH4IV	ACGT	1 cut(s)	684
HpyCH4V	TGCA	5 cut(s)	123, 409, 877, 892, 953
HpyF10VI	GCNNNNNNNGC	2 cut(s)	66, 538
HpyF3I	CTNAG	4 cut(s)	213, 283, 620, 849
HpySE526I	ACGT	1 cut(s)	684
Hsp92II	CATG	7 cut(s)	20, 91, 329, 359, 536, 728, 772
HspAI	GCGC	1 cut(s)	39
Ksp22I	TGATCA	1 cut(s)	790
Kzo9I	GATC	5 cut(s)	13, 247, 577, 598, 790
LmnI	GCTCC	1 cut(s)	20
Lsp1109I	GCAGC	4 cut(s)	865, 889, 904, 965
LweI	GCATC	4 cut(s)	396, 528, 678, 1020
MaeI	CTAG	2 cut(s)	177, 369
MaeII	ACGT	1 cut(s)	684
MaeIII	GTNAC	2 cut(s)	74, 615
MalI	GATC	5 cut(s)	15, 249, 579, 600, 792
MbiI	CCGCTC	1 cut(s)	104
MboI	GATC	5 cut(s)	13, 247, 577, 598, 790
MboII	GAAGA	6 cut(s)	233, 254, 384, 415, 453, 1005
MflI	RGATCY	1 cut(s)	247
MhlI	GDGCHC	1 cut(s)	644
MluCI	AATT	2 cut(s)	298, 474
MlyI	GAGTC	2 cut(s)	275, 774
MnlI	CCTC	3 cut(s)	503, 652, 769
MroXI	GAANNNNTTC	1 cut(s)	448
MseI	TTAA	4 cut(s)	297, 428, 696, 842
MslI	CAYNNNNRTG	1 cut(s)	92
MspI	CCGG	3 cut(s)	169, 466, 529
MspR9I	CCNGG	1 cut(s)	165
Mva1269I	GAATGC	2 cut(s)	125, 178
MvaI	CCWGG	1 cut(s)	165
MvnI	CGCG	1 cut(s)	608
MwoI	GCNNNNNNNGC	2 cut(s)	66, 538
NdeII	GATC	5 cut(s)	13, 247, 577, 598, 790
NlaIII	CATG	7 cut(s)	20, 91, 329, 359, 536, 728, 772
NlaIV	GGNNCC	3 cut(s)	22, 514, 651
NmeAIII	GCCGAG	1 cut(s)	799
NmuCI	GTSAC	1 cut(s)	74
NruI	TCGCGA	1 cut(s)	608
NspI	RCATGY	1 cut(s)	91
PaqCI	CACCTGC	1 cut(s)	65
PctI	GAATGC	2 cut(s)	125, 178
PdmI	GAANNNNTTC	1 cut(s)	448
PfeI	GAWTC	6 cut(s)	62, 180, 389, 705, 755, 859
PkrI	GCNGC	4 cut(s)	855, 879, 894, 955
PleI	GAGTC	2 cut(s)	275, 773
PpsI	GAGTC	2 cut(s)	275, 773
PshBI	ATTAAT	2 cut(s)	297, 842
Psp6I	CCWGG	1 cut(s)	163
PspGI	CCWGG	1 cut(s)	163
PspN4I	GGNNCC	3 cut(s)	22, 514, 651
PsuI	RGATCY	1 cut(s)	247
RruI	TCGCGA	1 cut(s)	608
RsaI	GTAC	4 cut(s)	86, 341, 884, 1049
RsaNI	GTAC	4 cut(s)	85, 340, 883, 1048
RseI	CAYNNNNRTG	1 cut(s)	92
SaqAI	TTAA	4 cut(s)	297, 428, 696, 842
SatI	GCNGC	4 cut(s)	854, 878, 893, 954
Sau3AI	GATC	5 cut(s)	13, 247, 577, 598, 790
ScaI	AGTACT	2 cut(s)	341, 884
SchI	GAGTC	2 cut(s)	275, 774
ScrFI	CCNGG	1 cut(s)	165
SduI	GDGCHC	1 cut(s)	644
SfaNI	GCATC	4 cut(s)	396, 528, 678, 1020
SmiMI	CAYNNNNRTG	1 cut(s)	92
SmlI	CTYRAG	1 cut(s)	700
SmoI	CTYRAG	1 cut(s)	700
Sse9I	AATT	2 cut(s)	298, 474
SsiI	CCGC	1 cut(s)	104
SspI	AATATT	1 cut(s)	295
SspMI	CTAG	2 cut(s)	177, 369
StyD4I	CCNGG	1 cut(s)	163
TaaI	ACNGT	1 cut(s)	917
TaiI	ACGT	1 cut(s)	687
TasI	AATT	2 cut(s)	298, 474
TatI	WGTACW	2 cut(s)	339, 882
TfiI	GAWTC	6 cut(s)	62, 180, 389, 705, 755, 859
Tru1I	TTAA	4 cut(s)	297, 428, 696, 842
Tru9I	TTAA	4 cut(s)	297, 428, 696, 842
TscAI	CASTG	2 cut(s)	506, 997
TseFI	GTSAC	1 cut(s)	74
TseI	GCWGC	4 cut(s)	853, 877, 892, 953
Tsp45I	GTSAC	1 cut(s)	74
TspDTI	ATGAA	6 cut(s)	384, 402, 471, 513, 626, 678
TspGWI	ACGGA	1 cut(s)	72
TspRI	CASTG	2 cut(s)	506, 997
VspI	ATTAAT	2 cut(s)	297, 842
XapI	RAATTY	1 cut(s)	474
XceI	RCATGY	1 cut(s)	91
XcmI	CCANNNNNNNNNTGG	1 cut(s)	974
XmnI	GAANNNNTTC	1 cut(s)	448
XspI	CTAG	2 cut(s)	177, 369
ZrmI	AGTACT	2 cut(s)	341, 884

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.