Rmu_sc0002266.1_g000007

zinc finger CCCH domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002266.1
Physical Location & Seq
Forward (+)
32997 .. 34463
1467 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002266.1_g000007.1.cds

Sequence Viewer

Length: 1224 bp
atggcgcacaggttgctcaggaatgtggaggcagatggttgggaacggtcagacttccccatcatctgcgagtcgtgcctgggagacaatccctatgttcgcatgacgaaagctgattatgacaaggagtgcaagacttgtactcggccgttcaccgttttccggtggaggcctggccgtgatgcccgattcaagaagacggagatttgccagacgtgcagtaagttgaagaatgtctgtcaagtttgcatcttggacctggaatatggtttgccagtacaggttcgagacactgctatggctatcaactccactgatgtgattcccaagagcgatgtcaatagggagttttttgccgaggagcatgaccgaaaggctagagccggtatagattacgaatcttcctatgggaaagctcggcccagtgacactattttgaagcttcaaagaacagcaccctattacaaaaggaacagagcacatgtatgcagtttctacattcgaggtgagtgcacaagaggcgctgagtgcccttacaggcatgaaatgcccataactggggagttggcacaacaaaacattaaagatcgttactatgggtatgtcaatgcatcctactttactattttcaatatgataaggagttcatgggactcagagggcacagatgaagctcggcagcaggcagtggctcatagtggattgttgcctcgagcagtgatttcacaacagcagaaccaaatacaagatcaatctgcaacagtgcagcactactacaacatgccacctccaccatcttcacaggagaggacattttatccatcaatggatcctcaaagaatgggcgctgttgttcgatctcaagatggggctcctagtgggcccgcagggtctggcgagaacaaatctggttcagagaggcagcattatgcttttcaaaccatggctccaccacatggtcattatcatcatcagcagttttatcctcccccatatacagcttatatgcctctgccgccaccagcttaccaacaacaataccctccgcaatatcatgctccagtgcctccacaacagtccttgacaatgaaccaacagtaccagcagcattctgcaacacctgcagcttctacatcatcagcacccgcagcttcaagttctgggccttcagaatccacagcatctgaatctggatctgcaccaactgcgccatcacagcagtga

Protein Analysis

407

Amino Acids

45.81

Weight (kDa)

7.95

Isoelectric Point (pI)

71.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1129
Acc36I ACCTGC 1 cut(s) 1129
AccB7I CCANNNNNTGG 1 cut(s) 956
AciI CCGC 4 cut(s) 885, 1016, 1046, 1146
AclWI GGATC 3 cut(s) 824, 837, 1201
AcoI YGGCCR 2 cut(s) 146, 175
AcuI CTGAAG 1 cut(s) 1152
AfaI GTAC 3 cut(s) 142, 279, 1100
AfiI CCNNNNNNNGG 4 cut(s) 162, 557, 558, 956
AflIII ACRYGT 1 cut(s) 481
AgsI TTSAA 7 cut(s) 193, 229, 439, 446, 631, 938, 1155
AjiI CACGTC 1 cut(s) 216
AjnI CCWGG 3 cut(s) 78, 172, 258
AleI CACNNNNGTG 2 cut(s) 317, 1219
AluBI AGCT 8 cut(s) 113, 416, 442, 674, 1001, 1025, 1127, 1151
AluI AGCT 8 cut(s) 113, 416, 442, 674, 1001, 1025, 1127, 1151
Alw21I GWGCWC 2 cut(s) 481, 515
Alw26I GTCTC 2 cut(s) 78, 282
Alw44I GTGCAC 1 cut(s) 511
AlwI GGATC 3 cut(s) 824, 837, 1201
AlwNI CAGNNNCTG 2 cut(s) 893, 1184
Ama87I CYCGRG 1 cut(s) 711
AoxI GGCC 6 cut(s) 146, 170, 175, 419, 881, 1163
ApaI GGGCCC 1 cut(s) 885
ApaLI GTGCAC 1 cut(s) 511
ApeKI GCWGC 6 cut(s) 679, 766, 922, 1105, 1124, 1148
AspLEI GCGC 4 cut(s) 7, 524, 848, 1210
AspS9I GGNCC 5 cut(s) 256, 420, 881, 882, 1163
AsuHPI GGTGA 2 cut(s) 145, 518
AvaI CYCGRG 1 cut(s) 711
AvaII GGWCC 1 cut(s) 256
BaeGI GKGCMC 4 cut(s) 515, 533, 665, 885
BamHI GGATCC 1 cut(s) 829
BanII GRGCYC 2 cut(s) 874, 885
BbsI GAAGAC 1 cut(s) 203
Bbv12I GWGCWC 2 cut(s) 481, 515
BbvI GCAGC 6 cut(s) 691, 778, 934, 1117, 1136, 1160
BccI CCATC 6 cut(s) 29, 68, 802, 829, 860, 1219
BceAI ACGGC 2 cut(s) 133, 162
BcgI CGANNNNNNTGC 2 cut(s) 492, 526
BciT130I CCWGG 3 cut(s) 80, 174, 260
BcoDI GTCTC 2 cut(s) 78, 282
BfaI CTAG 2 cut(s) 378, 876
BfmI CTRYAG 1 cut(s) 1122
BfoI RGCGCY 2 cut(s) 525, 849
BfuAI ACCTGC 1 cut(s) 1129
BisI GCNGC 7 cut(s) 680, 767, 923, 1016, 1106, 1125, 1149
BlsI GCNGC 7 cut(s) 681, 768, 924, 1017, 1107, 1126, 1150
Bme1390I CCNGG 3 cut(s) 80, 174, 260
Bme18I GGWCC 1 cut(s) 256
BmeT110I CYCGRG 1 cut(s) 711
BmgBI CACGTC 1 cut(s) 216
BmgT120I GGNCC 5 cut(s) 256, 420, 881, 882, 1163
BmiI GGNNCC 4 cut(s) 831, 873, 883, 948
BmrFI CCNGG 3 cut(s) 80, 174, 260
BmrI ACTGGG 2 cut(s) 417, 567
BmsI GCATC 4 cut(s) 172, 258, 620, 1190
BmuI ACTGGG 2 cut(s) 417, 567
BpiI GAAGAC 1 cut(s) 203
BpmI CTGGAG 1 cut(s) 1044
Bpu10I CCTNAGC 1 cut(s) 17
BpuEI CTTGAG 1 cut(s) 846
BsaJI CCNNGG 3 cut(s) 79, 357, 942
BsaWI WCCGGW 1 cut(s) 162
BsaXI ACNNNNNCTCC 2 cut(s) 931, 961
Bsc4I CCNNNNNNNGG 4 cut(s) 162, 557, 558, 956
Bse118I RCCGGY 1 cut(s) 383
Bse1I ACTGG 4 cut(s) 275, 423, 562, 1061
BseBI CCWGG 3 cut(s) 80, 174, 260
BseDI CCNNGG 3 cut(s) 79, 357, 942
BseGI GGATG 1 cut(s) 611
BseLI CCNNNNNNNGG 4 cut(s) 162, 557, 558, 956
BseMII CTCAG 3 cut(s) 31, 516, 669
BseNI ACTGG 4 cut(s) 275, 423, 562, 1061
BseRI GAGGAG 1 cut(s) 374
BseSI GKGCMC 4 cut(s) 515, 533, 665, 885
BseX3I CGGCCG 1 cut(s) 146
BseXI GCAGC 6 cut(s) 691, 778, 934, 1117, 1136, 1160
BsgI GTGCAG 3 cut(s) 238, 785, 1182
Bsh1285I CGRYCG 1 cut(s) 149
BshFI GGCC 6 cut(s) 148, 172, 177, 421, 883, 1165
BsiEI CGRYCG 1 cut(s) 149
BsiHKAI GWGCWC 2 cut(s) 481, 515
BsiHKCI CYCGRG 1 cut(s) 711
BsiSI CCGG 2 cut(s) 163, 384
BslFI GGGAC 1 cut(s) 665
BslI CCNNNNNNNGG 4 cut(s) 162, 557, 558, 956
BsmAI GTCTC 2 cut(s) 78, 282
BsmFI GGGAC 1 cut(s) 665
BsmI GAATGC 1 cut(s) 1108
BsnI GGCC 6 cut(s) 148, 172, 177, 421, 883, 1165
BsoBI CYCGRG 1 cut(s) 711
Bsp120I GGGCCC 1 cut(s) 881
Bsp1286I GDGCHC 6 cut(s) 481, 515, 533, 665, 874, 885
Bsp143I GATC 5 cut(s) 586, 748, 829, 857, 1193
Bsp19I CCATGG 1 cut(s) 942
BspACI CCGC 4 cut(s) 885, 1016, 1046, 1146
BspANI GGCC 6 cut(s) 148, 172, 177, 421, 883, 1165
BspCNI CTCAG 3 cut(s) 30, 517, 668
BspLI GGNNCC 4 cut(s) 831, 873, 883, 948
BspMAI CTGCAG 1 cut(s) 1126
BspMI ACCTGC 1 cut(s) 1129
BspPI GGATC 3 cut(s) 824, 837, 1201
BsrFI RCCGGY 1 cut(s) 383
BsrI ACTGG 4 cut(s) 275, 423, 562, 1061
BssAI RCCGGY 1 cut(s) 383
BssECI CCNNGG 3 cut(s) 79, 357, 942
BssMI GATC 5 cut(s) 586, 748, 829, 857, 1193
BssT1I CCWWGG 1 cut(s) 942
Bst2UI CCWGG 3 cut(s) 80, 174, 260
Bst4CI ACNGT 5 cut(s) 48, 157, 763, 1077, 1098
BstAPI GCANNNNNTGC 4 cut(s) 13, 547, 1121, 1205
BstC8I GCNNGC 2 cut(s) 684, 885
BstDEI CTNAG 3 cut(s) 17, 525, 655
BstDSI CCRYGG 1 cut(s) 942
BstF5I GGATG 1 cut(s) 611
BstH2I RGCGCY 2 cut(s) 525, 849
BstHHI GCGC 4 cut(s) 7, 524, 848, 1210
BstKTI GATC 5 cut(s) 589, 751, 832, 860, 1196
BstMAI GTCTC 2 cut(s) 78, 282
BstMBI GATC 5 cut(s) 586, 748, 829, 857, 1193
BstMCI CGRYCG 1 cut(s) 149
BstNI CCWGG 3 cut(s) 80, 174, 260
BstNSI RCATGY 2 cut(s) 485, 784
BstSCI CCNGG 3 cut(s) 78, 172, 258
BstSFI CTRYAG 1 cut(s) 1122
BstSLI GKGCMC 4 cut(s) 515, 533, 665, 885
BstV1I GCAGC 6 cut(s) 691, 778, 934, 1117, 1136, 1160
BstV2I GAAGAC 1 cut(s) 203
BstX2I RGATCY 2 cut(s) 829, 1193
BstYI RGATCY 2 cut(s) 829, 1193
BstZI CGGCCG 1 cut(s) 146
BsuRI GGCC 6 cut(s) 148, 172, 177, 421, 883, 1165
BtgI CCRYGG 1 cut(s) 942
BtgZI GCGATG 1 cut(s) 348
BtrI CACGTC 1 cut(s) 216
BtsCI GGATG 1 cut(s) 611
BtsI GCAGTG 3 cut(s) 291, 693, 723
BtsIMutI CAGTG 7 cut(s) 291, 312, 430, 693, 723, 768, 1068
BveI ACCTGC 1 cut(s) 1129
Cac8I GCNNGC 2 cut(s) 684, 885
CaiI CAGNNNCTG 2 cut(s) 893, 1184
CfoI GCGC 4 cut(s) 7, 524, 848, 1210
Cfr10I RCCGGY 1 cut(s) 383
Cfr13I GGNCC 5 cut(s) 256, 420, 881, 882, 1163
Csp6I GTAC 3 cut(s) 141, 278, 1099
CviAII CATG 9 cut(s) 103, 365, 482, 542, 648, 781, 943, 956, 1055
CviQI GTAC 3 cut(s) 141, 278, 1099
DdeI CTNAG 3 cut(s) 17, 525, 655
DpnI GATC 5 cut(s) 588, 750, 831, 859, 1195
DpnII GATC 5 cut(s) 586, 748, 829, 857, 1193
EaeI YGGCCR 2 cut(s) 146, 175
EagI CGGCCG 1 cut(s) 146
EclXI CGGCCG 1 cut(s) 146
Eco130I CCWWGG 1 cut(s) 942
Eco147I AGGCCT 1 cut(s) 172
Eco24I GRGCYC 2 cut(s) 874, 885
Eco47I GGWCC 1 cut(s) 256
Eco52I CGGCCG 1 cut(s) 146
Eco57I CTGAAG 1 cut(s) 1152
Eco88I CYCGRG 1 cut(s) 711
EcoRII CCWGG 3 cut(s) 78, 172, 258
EcoT14I CCWWGG 1 cut(s) 942
EcoT22I ATGCAT 1 cut(s) 613
EcoT38I GRGCYC 2 cut(s) 874, 885
ErhI CCWWGG 1 cut(s) 942
FaeI CATG 9 cut(s) 106, 368, 485, 545, 651, 784, 946, 959, 1058
FaqI GGGAC 1 cut(s) 665
FatI CATG 9 cut(s) 102, 364, 481, 541, 647, 780, 942, 955, 1054
FauI CCCGC 2 cut(s) 892, 1153
Fnu4HI GCNGC 7 cut(s) 680, 767, 923, 1016, 1106, 1125, 1149
FokI GGATG 1 cut(s) 598
FriOI GRGCYC 2 cut(s) 874, 885
Fsp4HI GCNGC 7 cut(s) 680, 767, 923, 1016, 1106, 1125, 1149
FspBI CTAG 2 cut(s) 378, 876
GlaI GCGC 4 cut(s) 6, 523, 847, 1209
GluI GCNGC 7 cut(s) 680, 767, 923, 1016, 1106, 1125, 1149
GsuI CTGGAG 1 cut(s) 1044
HaeII RGCGCY 2 cut(s) 525, 849
HaeIII GGCC 6 cut(s) 148, 172, 177, 421, 883, 1165
HapII CCGG 2 cut(s) 163, 384
HhaI GCGC 4 cut(s) 7, 524, 848, 1210
Hin1II CATG 9 cut(s) 106, 368, 485, 545, 651, 784, 946, 959, 1058
Hin6I GCGC 4 cut(s) 5, 522, 846, 1208
HinP1I GCGC 4 cut(s) 5, 522, 846, 1208
HindIII AAGCTT 1 cut(s) 440
HinfI GANTC 7 cut(s) 71, 189, 322, 398, 653, 1172, 1187
HpaII CCGG 2 cut(s) 163, 384
HphI GGTGA 2 cut(s) 145, 518
Hpy166II GTNNAC 2 cut(s) 153, 513
Hpy188I TCNGA 5 cut(s) 52, 658, 916, 1171, 1186
Hpy188III TCNNGA 5 cut(s) 19, 193, 287, 863, 1191
Hpy8I GTNNAC 2 cut(s) 153, 513
HpyAV CCTTC 1 cut(s) 1176
HpyCH4III ACNGT 5 cut(s) 48, 157, 763, 1077, 1098
HpyCH4IV ACGT 1 cut(s) 215
HpyF3I CTNAG 3 cut(s) 17, 525, 655
HpySE526I ACGT 1 cut(s) 215
Hsp92II CATG 9 cut(s) 106, 368, 485, 545, 651, 784, 946, 959, 1058
HspAI GCGC 4 cut(s) 5, 522, 846, 1208
Kzo9I GATC 5 cut(s) 586, 748, 829, 857, 1193
LmnI GCTCC 4 cut(s) 361, 877, 952, 1063
Lsp1109I GCAGC 6 cut(s) 691, 778, 934, 1117, 1136, 1160
LweI GCATC 4 cut(s) 172, 258, 620, 1190
MaeI CTAG 2 cut(s) 378, 876
MaeII ACGT 1 cut(s) 215
MaeIII GTNAC 2 cut(s) 425, 590
MalI GATC 5 cut(s) 588, 750, 831, 859, 1195
MboI GATC 5 cut(s) 586, 748, 829, 857, 1193
MboII GAAGA 4 cut(s) 208, 241, 393, 789
MflI RGATCY 2 cut(s) 829, 1193
MhlI GDGCHC 6 cut(s) 481, 515, 533, 665, 874, 885
MlyI GAGTC 2 cut(s) 80, 647
Mph1103I ATGCAT 1 cut(s) 613
MseI TTAA 1 cut(s) 582
MslI CAYNNNNRTG 4 cut(s) 296, 317, 484, 1219
MspI CCGG 2 cut(s) 163, 384
MspR9I CCNGG 3 cut(s) 80, 174, 260
Mva1269I GAATGC 1 cut(s) 1108
MvaI CCWGG 3 cut(s) 80, 174, 260
NcoI CCATGG 1 cut(s) 942
NdeII GATC 5 cut(s) 586, 748, 829, 857, 1193
NlaIII CATG 9 cut(s) 106, 368, 485, 545, 651, 784, 946, 959, 1058
NlaIV GGNNCC 4 cut(s) 831, 873, 883, 948
NmeAIII GCCGAG 4 cut(s) 124, 382, 397, 655
NmuCI GTSAC 1 cut(s) 425
NsiI ATGCAT 1 cut(s) 613
NspI RCATGY 2 cut(s) 485, 784
OliI CACNNNNGTG 2 cut(s) 317, 1219
PaeR7I CTCGAG 1 cut(s) 711
PaqCI CACCTGC 1 cut(s) 1129
PceI AGGCCT 1 cut(s) 172
PciI ACATGT 1 cut(s) 481
PctI GAATGC 1 cut(s) 1108
PfeI GAWTC 5 cut(s) 189, 322, 398, 1172, 1187
PflMI CCANNNNNTGG 1 cut(s) 956
PkrI GCNGC 7 cut(s) 681, 768, 924, 1017, 1107, 1126, 1150
PleI GAGTC 2 cut(s) 79, 647
PpsI GAGTC 2 cut(s) 79, 647
PscI ACATGT 1 cut(s) 481
Psp6I CCWGG 3 cut(s) 78, 172, 258
PspGI CCWGG 3 cut(s) 78, 172, 258
PspN4I GGNNCC 4 cut(s) 831, 873, 883, 948
PspOMI GGGCCC 1 cut(s) 881
PspPI GGNCC 5 cut(s) 256, 420, 881, 882, 1163
PspXI VCTCGAGB 1 cut(s) 711
PsrI GAACNNNNNNTAC 2 cut(s) 1082, 1114
PstI CTGCAG 1 cut(s) 1126
PstNI CAGNNNCTG 2 cut(s) 893, 1184
PsuI RGATCY 2 cut(s) 829, 1193
RsaI GTAC 3 cut(s) 142, 279, 1100
RsaNI GTAC 3 cut(s) 141, 278, 1099
RseI CAYNNNNRTG 4 cut(s) 296, 317, 484, 1219
SaqAI TTAA 1 cut(s) 582
SatI GCNGC 7 cut(s) 680, 767, 923, 1016, 1106, 1125, 1149
Sau3AI GATC 5 cut(s) 586, 748, 829, 857, 1193
Sau96I GGNCC 5 cut(s) 256, 420, 881, 882, 1163
SchI GAGTC 2 cut(s) 80, 647
ScrFI CCNGG 3 cut(s) 80, 174, 260
SduI GDGCHC 6 cut(s) 481, 515, 533, 665, 874, 885
SfaNI GCATC 4 cut(s) 172, 258, 620, 1190
SfcI CTRYAG 1 cut(s) 1122
Sfr274I CTCGAG 1 cut(s) 711
SinI GGWCC 1 cut(s) 256
SlaI CTCGAG 1 cut(s) 711
SmiMI CAYNNNNRTG 4 cut(s) 296, 317, 484, 1219
SmlI CTYRAG 2 cut(s) 711, 861
SmoI CTYRAG 2 cut(s) 711, 861
SseBI AGGCCT 1 cut(s) 172
SsiI CCGC 4 cut(s) 885, 1016, 1046, 1146
SspMI CTAG 2 cut(s) 378, 876
StuI AGGCCT 1 cut(s) 172
StyD4I CCNGG 3 cut(s) 78, 172, 258
StyI CCWWGG 1 cut(s) 942
TaaI ACNGT 5 cut(s) 48, 157, 763, 1077, 1098
TaiI ACGT 1 cut(s) 218
TaqI TCGA 4 cut(s) 286, 502, 712, 856
TaqII GACCGA 1 cut(s) 384
TatI WGTACW 2 cut(s) 140, 277
TauI GCSGC 1 cut(s) 1018
TfiI GAWTC 5 cut(s) 189, 322, 398, 1172, 1187
Tru1I TTAA 1 cut(s) 582
Tru9I TTAA 1 cut(s) 582
TscAI CASTG 7 cut(s) 298, 319, 430, 693, 723, 768, 1068
TseFI GTSAC 1 cut(s) 425
TseI GCWGC 6 cut(s) 679, 766, 922, 1105, 1124, 1148
Tsp45I GTSAC 1 cut(s) 425
TspDTI ATGAA 4 cut(s) 558, 636, 684, 1103
TspGWI ACGGA 1 cut(s) 215
TspRI CASTG 7 cut(s) 298, 319, 430, 693, 723, 768, 1068
Van91I CCANNNNNTGG 1 cut(s) 956
VneI GTGCAC 1 cut(s) 511
VpaK11BI GGWCC 1 cut(s) 256
XceI RCATGY 2 cut(s) 485, 784
XhoI CTCGAG 1 cut(s) 711
XspI CTAG 2 cut(s) 378, 876
Zsp2I ATGCAT 1 cut(s) 613
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.