Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005878.1

Orthogroup ID

OG0000929

Physical Location & Seq

Genomic Coordinates Reverse (-)

98694 .. 99560

Gene Structure 867 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005878.1_g000023.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

atgaagctacttaacaaggctggagagatgccgtccctggaaccgccggaggatgaaagcattagaaccctgtatgtgggtgggattgatgcaagagtctctgagcaggatttaagggatcagttttatgctcatggcgaaatagaatccgttaggatggtgctccaacgagcatgtgcttttgtaacatacacaacaagagaagctgcagaaaaggccgcagaagaactctccaataggctggtggtgaagggtttgaggttgaagttaatgtggggaaggccgcaagcaccaaaacaggacttggagggcacagatgaggctaggcaacaggccgtggctcatagtggcttgttgcctcgggcagtcatatcccaacagcagagccaattacaagaccaatctgcaccaccagtgcagcactactacaacatcccacctccagcttcgcaggagagaacgtattatccatccatggatcctcaaagaatgggtgcagttgttcgatcgcaggatggagctccaagtggccccagagggtcaggtgagaacagttctggttctgagaggcagcattatgcttttcaaaatatggctcctccacatggtcaatataatcagcagttttatcctcaaccatacagcggttatatgcctccaccaccttatcagcaataccctccgcaatatcatgctgcagtgccaccaccatcatccttgccgatgaatcaacattaccagcattctgcaacaccagggactgcaccctcaggttctacatcgtctgtacctgcacaatcaaattctggaccttccgagtctggctctggctctgggcctgcgccaacagggtcatcacagcagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000387 GO:0000398 GO:0000974 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008380 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0017069 GO:0017070 GO:0022607 GO:0022613 GO:0022618 GO:0032991 GO:0034622 GO:0034641 GO:0036002 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0051704 GO:0051707 GO:0065003 GO:0071006 GO:0071007 GO:0071012 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:0098542 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1 Torus

Protein Analysis

288

Amino Acids

31.38

Weight (kDa)

6.06

Isoelectric Point (pI)

80.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000929)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07360 AT2G29580 AT5G04210 AT5G07060 AT5G07060
fragaria_vesca	FvH4_4g11590 FvH4_4g11590 FvH4_4g11590 FvH4_4g11590 FvH4_4g11590 FvH4_4g36530 FvH4_4g36530 FvH4_7g07370
malus_domestica	MD01G1110000.v1.1 MD07G1175800.v1.1 MD16G1006600.v1.1
prunus_persica	Prupe.2G214800_v2.0.a1 Prupe.8G143100_v2.0.a1 Prupe.8G143100_v2.0.a1 Prupe.8G143100_v2.0.a1
pyrus_communis	pycom01g13690 pycom07g17000 pycom16g00630
rosa_chinensis	RchiOBHm_Chr1g0337351 RchiOBHm_Chr4g0408701 RchiOBHm_Chr4g0446281
rosa_laevigata	RLG00000005673 RLG00000008640 RLG00000029280 RLG00000029283
rosa_multiflora	Rmu_co8341103.1_g000001 Rmu_co8350441.1_g000001 Rmu_co8408813.1_g000001 Rmu_co8519167.1_g000003 Rmu_co8522047.1_g000002 Rmu_sc0002266.1_g000007 Rmu_sc0003060.1_g000002 Rmu_sc0005878.1_g000023 Rmu_sc0021927.1_g000001
rosa_roxburghii	Rroxscaffold_4G00314450 Rroxscaffold_4G00314490 Rroxscaffold_5G00353060 Rroxscaffold_5G00386720
rosa_rugosa	Rorug01G0134600.1 Rorug01G0134800.1 Rorug04G0086900 Rorug04G0369600 Rorug04G0369600
rosa_samantha	Rh1AG153600 Rh1BG122900 Rh1BG123100 Rh1CG144600 Rh1DG161300 Rh1DG161500 Rh4AG431500 Rh4BG148400 Rh4BG440900 Rh4CG159100 Rh4CG458200 Rh4DG144000 Rh4DG439400
rosa_wichuraiana	Rw1G012580 Rw4G012370 Rw4G036850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	799
AciI	CCGC	5 cut(s)	44, 219, 284, 645, 683
AclWI	GGATC	3 cut(s)	126, 473, 486
AcsI	RAATTY	1 cut(s)	802
AfaI	GTAC	1 cut(s)	789
AfiI	CCNNNNNNNGG	3 cut(s)	76, 605, 644
AgsI	TTSAA	2 cut(s)	265, 587
AjnI	CCWGG	2 cut(s)	36, 754
AleI	CACNNNNGTG	1 cut(s)	862
AloI	GAACNNNNNNTCC	2 cut(s)	451, 483
AluBI	AGCT	4 cut(s)	7, 206, 446, 521
AluI	AGCT	4 cut(s)	7, 206, 446, 521
Alw21I	GWGCWC	2 cut(s)	165, 523
Alw26I	GTCTC	1 cut(s)	103
AlwI	GGATC	3 cut(s)	126, 473, 486
AlwNI	CAGNNNCTG	1 cut(s)	761
Ama87I	CYCGRG	1 cut(s)	360
AoxI	GGCC	5 cut(s)	216, 281, 333, 529, 836
ApeKI	GCWGC	4 cut(s)	206, 418, 571, 695
ApoI	RAATTY	1 cut(s)	802
AspLEI	GCGC	1 cut(s)	844
AspS9I	GGNCC	3 cut(s)	530, 809, 836
AsuHPI	GGTGA	2 cut(s)	259, 557
AvaI	CYCGRG	1 cut(s)	360
AvaII	GGWCC	1 cut(s)	809
AxyI	CCTNAGG	1 cut(s)	769
BaeGI	GKGCMC	1 cut(s)	314
BamHI	GGATCC	1 cut(s)	478
BanII	GRGCYC	1 cut(s)	523
Bbv12I	GWGCWC	2 cut(s)	165, 523
BbvI	GCAGC	4 cut(s)	193, 430, 583, 682
BccI	CCATC	4 cut(s)	151, 478, 509, 718
BceAI	ACGGC	2 cut(s)	16, 320
BciT130I	CCWGG	2 cut(s)	38, 756
BcoDI	GTCTC	1 cut(s)	103
BfaI	CTAG	1 cut(s)	324
BfmI	CTRYAG	2 cut(s)	207, 696
BfuAI	ACCTGC	1 cut(s)	799
BisI	GCNGC	6 cut(s)	207, 219, 284, 419, 572, 696
BlsI	GCNGC	6 cut(s)	208, 220, 285, 420, 573, 697
Bme1390I	CCNGG	2 cut(s)	38, 756
Bme18I	GGWCC	1 cut(s)	809
BmeT110I	CYCGRG	1 cut(s)	360
BmgT120I	GGNCC	3 cut(s)	530, 809, 836
BmiI	GGNNCC	4 cut(s)	42, 480, 532, 597
BmrFI	CCNGG	2 cut(s)	38, 756
BmsI	GCATC	2 cut(s)	18, 79
BplI	GAGNNNNNCTC	2 cut(s)	809, 841
BpmI	CTGGAG	2 cut(s)	42, 426
BsaJI	CCNNGG	5 cut(s)	36, 336, 359, 474, 755
BsaXI	ACNNNNNCTCC	2 cut(s)	446, 476
Bsc4I	CCNNNNNNNGG	3 cut(s)	76, 605, 644
Bse1I	ACTGG	1 cut(s)	413
Bse21I	CCTNAGG	1 cut(s)	769
BseBI	CCWGG	2 cut(s)	38, 756
BseDI	CCNNGG	5 cut(s)	36, 336, 359, 474, 755
BseGI	GGATG	6 cut(s)	58, 162, 432, 470, 520, 713
BseLI	CCNNNNNNNGG	3 cut(s)	76, 605, 644
BseMII	CTCAG	3 cut(s)	93, 555, 783
BseNI	ACTGG	1 cut(s)	413
BseRI	GAGGAG	1 cut(s)	588
BseSI	GKGCMC	1 cut(s)	314
BseXI	GCAGC	4 cut(s)	193, 430, 583, 682
BsgI	GTGCAG	5 cut(s)	390, 437, 516, 747, 777
Bsh1285I	CGRYCG	1 cut(s)	509
BshFI	GGCC	5 cut(s)	218, 283, 335, 531, 838
BsiEI	CGRYCG	1 cut(s)	509
BsiHKAI	GWGCWC	2 cut(s)	165, 523
BsiHKCI	CYCGRG	1 cut(s)	360
BsiSI	CCGG	1 cut(s)	47
BslFI	GGGAC	2 cut(s)	19, 772
BslI	CCNNNNNNNGG	3 cut(s)	76, 605, 644
BsmAI	GTCTC	1 cut(s)	103
BsmFI	GGGAC	2 cut(s)	19, 772
BsmI	GAATGC	1 cut(s)	742
BsnI	GGCC	5 cut(s)	218, 283, 335, 531, 838
BsoBI	CYCGRG	1 cut(s)	360
Bsp1286I	GDGCHC	3 cut(s)	165, 314, 523
Bsp143I	GATC	3 cut(s)	118, 478, 506
Bsp19I	CCATGG	1 cut(s)	474
BspACI	CCGC	5 cut(s)	44, 219, 284, 645, 683
BspANI	GGCC	5 cut(s)	218, 283, 335, 531, 838
BspCNI	CTCAG	3 cut(s)	94, 556, 782
BspLI	GGNNCC	4 cut(s)	42, 480, 532, 597
BspMAI	CTGCAG	2 cut(s)	211, 700
BspMI	ACCTGC	1 cut(s)	799
BspPI	GGATC	3 cut(s)	126, 473, 486
BsrI	ACTGG	1 cut(s)	413
BssECI	CCNNGG	5 cut(s)	36, 336, 359, 474, 755
BssMI	GATC	3 cut(s)	118, 478, 506
BssT1I	CCWWGG	1 cut(s)	474
Bst2UI	CCWGG	2 cut(s)	38, 756
Bst4CI	ACNGT	1 cut(s)	554
BstC8I	GCNNGC	2 cut(s)	288, 840
BstDEI	CTNAG	3 cut(s)	102, 564, 769
BstDSI	CCRYGG	2 cut(s)	336, 474
BstF5I	GGATG	6 cut(s)	58, 162, 432, 470, 520, 713
BstHHI	GCGC	1 cut(s)	844
BstKTI	GATC	3 cut(s)	121, 481, 509
BstMAI	GTCTC	1 cut(s)	103
BstMBI	GATC	3 cut(s)	118, 478, 506
BstMCI	CGRYCG	1 cut(s)	509
BstMWI	GCNNNNNNNGC	1 cut(s)	215
BstNI	CCWGG	2 cut(s)	38, 756
BstNSI	RCATGY	1 cut(s)	177
BstSCI	CCNGG	2 cut(s)	36, 754
BstSFI	CTRYAG	2 cut(s)	207, 696
BstSLI	GKGCMC	1 cut(s)	314
BstV1I	GCAGC	4 cut(s)	193, 430, 583, 682
BstX2I	RGATCY	1 cut(s)	478
BstXI	CCANNNNNNTGG	1 cut(s)	241
BstYI	RGATCY	1 cut(s)	478
Bsu36I	CCTNAGG	1 cut(s)	769
BsuRI	GGCC	5 cut(s)	218, 283, 335, 531, 838
BtgI	CCRYGG	2 cut(s)	336, 474
BtsCI	GGATG	6 cut(s)	58, 162, 432, 470, 520, 713
BtsI	GCAGTG	1 cut(s)	705
BtsIMutI	CAGTG	2 cut(s)	420, 705
BveI	ACCTGC	1 cut(s)	799
Cac8I	GCNNGC	2 cut(s)	288, 840
CaiI	CAGNNNCTG	1 cut(s)	761
CfoI	GCGC	1 cut(s)	844
Cfr13I	GGNCC	3 cut(s)	530, 809, 836
Csp6I	GTAC	1 cut(s)	788
CviAII	CATG	5 cut(s)	134, 174, 475, 605, 692
CviQI	GTAC	1 cut(s)	788
DdeI	CTNAG	3 cut(s)	102, 564, 769
DpnI	GATC	3 cut(s)	120, 480, 508
DpnII	GATC	3 cut(s)	118, 478, 506
Ecl136II	GAGCTC	1 cut(s)	521
Eco130I	CCWWGG	1 cut(s)	474
Eco24I	GRGCYC	1 cut(s)	523
Eco47I	GGWCC	1 cut(s)	809
Eco53kI	GAGCTC	1 cut(s)	521
Eco81I	CCTNAGG	1 cut(s)	769
Eco88I	CYCGRG	1 cut(s)	360
EcoICRI	GAGCTC	1 cut(s)	521
EcoRII	CCWGG	2 cut(s)	36, 754
EcoT14I	CCWWGG	1 cut(s)	474
EcoT38I	GRGCYC	1 cut(s)	523
ErhI	CCWWGG	1 cut(s)	474
FaeI	CATG	5 cut(s)	137, 177, 478, 608, 695
FaqI	GGGAC	2 cut(s)	19, 772
FatI	CATG	5 cut(s)	133, 173, 474, 604, 691
Fnu4HI	GCNGC	6 cut(s)	207, 219, 284, 419, 572, 696
FokI	GGATG	6 cut(s)	65, 169, 419, 457, 527, 700
FriOI	GRGCYC	1 cut(s)	523
Fsp4HI	GCNGC	6 cut(s)	207, 219, 284, 419, 572, 696
FspBI	CTAG	1 cut(s)	324
GlaI	GCGC	1 cut(s)	843
GluI	GCNGC	6 cut(s)	207, 219, 284, 419, 572, 696
GsuI	CTGGAG	2 cut(s)	42, 426
HaeIII	GGCC	5 cut(s)	218, 283, 335, 531, 838
HapII	CCGG	1 cut(s)	47
HhaI	GCGC	1 cut(s)	844
Hin1II	CATG	5 cut(s)	137, 177, 478, 608, 695
Hin6I	GCGC	1 cut(s)	842
HinP1I	GCGC	1 cut(s)	842
HinfI	GANTC	4 cut(s)	96, 146, 727, 818
HpaII	CCGG	1 cut(s)	47
HphI	GGTGA	2 cut(s)	259, 557
Hpy188I	TCNGA	3 cut(s)	103, 565, 817
Hpy188III	TCNNGA	1 cut(s)	807
HpyAV	CCTTC	3 cut(s)	244, 273, 822
HpyCH4III	ACNGT	1 cut(s)	554
HpyCH4IV	ACGT	1 cut(s)	461
HpyCH4V	TGCA	9 cut(s)	92, 209, 407, 418, 497, 698, 749, 764, 794
HpyF10VI	GCNNNNNNNGC	1 cut(s)	215
HpyF3I	CTNAG	3 cut(s)	102, 564, 769
HpySE526I	ACGT	1 cut(s)	461
Hsp92II	CATG	5 cut(s)	137, 177, 478, 608, 695
HspAI	GCGC	1 cut(s)	842
Kzo9I	GATC	3 cut(s)	118, 478, 506
LmnI	GCTCC	4 cut(s)	168, 518, 526, 601
Lsp1109I	GCAGC	4 cut(s)	193, 430, 583, 682
LweI	GCATC	2 cut(s)	18, 79
MaeI	CTAG	1 cut(s)	324
MaeII	ACGT	1 cut(s)	461
MaeIII	GTNAC	1 cut(s)	184
MalI	GATC	3 cut(s)	120, 480, 508
MboI	GATC	3 cut(s)	118, 478, 506
MboII	GAAGA	1 cut(s)	236
MflI	RGATCY	1 cut(s)	478
MhlI	GDGCHC	3 cut(s)	165, 314, 523
MluCI	AATT	2 cut(s)	389, 802
MlyI	GAGTC	2 cut(s)	105, 827
MmeI	TCCRAC	1 cut(s)	190
MseI	TTAA	3 cut(s)	12, 113, 269
MslI	CAYNNNNRTG	1 cut(s)	862
MspA1I	CMGCKG	1 cut(s)	645
MspI	CCGG	1 cut(s)	47
MspR9I	CCNGG	2 cut(s)	38, 756
Mva1269I	GAATGC	1 cut(s)	742
MvaI	CCWGG	2 cut(s)	38, 756
MwoI	GCNNNNNNNGC	1 cut(s)	215
NcoI	CCATGG	1 cut(s)	474
NdeII	GATC	3 cut(s)	118, 478, 506
NlaIII	CATG	5 cut(s)	137, 177, 478, 608, 695
NlaIV	GGNNCC	4 cut(s)	42, 480, 532, 597
NspI	RCATGY	1 cut(s)	177
OliI	CACNNNNGTG	1 cut(s)	862
PctI	GAATGC	1 cut(s)	742
PfeI	GAWTC	2 cut(s)	146, 727
PkrI	GCNGC	6 cut(s)	208, 220, 285, 420, 573, 697
Ple19I	CGATCG	1 cut(s)	509
PleI	GAGTC	2 cut(s)	104, 826
PpsI	GAGTC	2 cut(s)	104, 826
Psp124BI	GAGCTC	1 cut(s)	523
Psp6I	CCWGG	2 cut(s)	36, 754
PspGI	CCWGG	2 cut(s)	36, 754
PspN4I	GGNNCC	4 cut(s)	42, 480, 532, 597
PspPI	GGNCC	3 cut(s)	530, 809, 836
PstI	CTGCAG	2 cut(s)	211, 700
PstNI	CAGNNNCTG	1 cut(s)	761
PsuI	RGATCY	1 cut(s)	478
PvuI	CGATCG	1 cut(s)	509
RsaI	GTAC	1 cut(s)	789
RsaNI	GTAC	1 cut(s)	788
RseI	CAYNNNNRTG	1 cut(s)	862
SacI	GAGCTC	1 cut(s)	523
SaqAI	TTAA	3 cut(s)	12, 113, 269
SatI	GCNGC	6 cut(s)	207, 219, 284, 419, 572, 696
Sau3AI	GATC	3 cut(s)	118, 478, 506
Sau96I	GGNCC	3 cut(s)	530, 809, 836
SchI	GAGTC	2 cut(s)	105, 827
ScrFI	CCNGG	2 cut(s)	38, 756
SduI	GDGCHC	3 cut(s)	165, 314, 523
SfaNI	GCATC	2 cut(s)	18, 79
SfcI	CTRYAG	2 cut(s)	207, 696
SinI	GGWCC	1 cut(s)	809
SmiMI	CAYNNNNRTG	1 cut(s)	862
Sse9I	AATT	2 cut(s)	389, 802
SsiI	CCGC	5 cut(s)	44, 219, 284, 645, 683
SspMI	CTAG	1 cut(s)	324
SstI	GAGCTC	1 cut(s)	523
StyD4I	CCNGG	2 cut(s)	36, 754
StyI	CCWWGG	1 cut(s)	474
TaaI	ACNGT	1 cut(s)	554
TaiI	ACGT	1 cut(s)	464
TaqI	TCGA	1 cut(s)	505
TasI	AATT	2 cut(s)	389, 802
TauI	GCSGC	2 cut(s)	221, 286
TfiI	GAWTC	2 cut(s)	146, 727
Tru1I	TTAA	3 cut(s)	12, 113, 269
Tru9I	TTAA	3 cut(s)	12, 113, 269
TscAI	CASTG	2 cut(s)	420, 705
TseI	GCWGC	4 cut(s)	206, 418, 571, 695
TspDTI	ATGAA	3 cut(s)	17, 69, 740
TspGWI	ACGGA	1 cut(s)	139
TspRI	CASTG	2 cut(s)	420, 705
VpaK11BI	GGWCC	1 cut(s)	809
XapI	RAATTY	1 cut(s)	802
XceI	RCATGY	1 cut(s)	177
XcmI	CCANNNNNNNNNTGG	1 cut(s)	241
XspI	CTAG	1 cut(s)	324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.