Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0021927.1

Orthogroup ID

OG0000929

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1321

Gene Structure 1321 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0021927.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 923 bp

agctgtcacagcaaaatatcaaagatcgatactacggagtcaatgatcctgtggcaatgaagctacttaacaaggctggagagatgccgtccctggaaccgccggaggatgaaagcattagaaccctgtatgtgggtgggattgatgcaagagtctctgagcaggatttaagggatcagttttatgctcatggcgaaatagaatccgttaggatggtgctccaacgagcatgtgcttttgtaacatacacaacaagagaagctgcagaaaaggccgcagaagaactctccaataggctggtggtgaagggtttgaggttgaagttaatgtggggtaggccgcaagcaccgaaacaggacttggagggcacagatgaggctaggcaacaggctgtggctcatagtggcttgttgcctcgagcagtcatatcccaacagcagagccaattacaagaccaatctgcaccaccagtgcagcattactacaacatcccacctccagcttcgcaggagagaacgtattatccatccatggatcctcaaagaatgggtgcagttgttcgatcgcaggatggagctccaagtggccccagagggtcaggtgagaacagttctggttctgagaggcagcattatgcttttcaaaatatggctcctccacatggtcaatataatcagcagttttatcctcaaccatacagcggttatatgcctccaccaccttatcagcaataccctccgcaatatcatgctgcagtgccaccaccatcatccttgccgatgaatcaacattaccagcattctgcaacaccagggactgcaccctcaggttctacatcgtctgtacctgcacaatcaaattctggaccttccgagtctggctctggctctgggcctgcgccaacagggtcatcacagcagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000387 GO:0000398 GO:0000974 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008380 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0017069 GO:0017070 GO:0022607 GO:0022613 GO:0022618 GO:0032991 GO:0034622 GO:0034641 GO:0036002 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0051704 GO:0051707 GO:0065003 GO:0071006 GO:0071007 GO:0071012 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:0098542 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1 Torus

Protein Analysis

306

Amino Acids

33.44

Weight (kDa)

6.08

Isoelectric Point (pI)

79.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000929)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07360 AT2G29580 AT5G04210 AT5G07060 AT5G07060
fragaria_vesca	FvH4_4g11590 FvH4_4g11590 FvH4_4g11590 FvH4_4g11590 FvH4_4g11590 FvH4_4g36530 FvH4_4g36530 FvH4_7g07370
malus_domestica	MD01G1110000.v1.1 MD07G1175800.v1.1 MD16G1006600.v1.1
prunus_persica	Prupe.2G214800_v2.0.a1 Prupe.8G143100_v2.0.a1 Prupe.8G143100_v2.0.a1 Prupe.8G143100_v2.0.a1
pyrus_communis	pycom01g13690 pycom07g17000 pycom16g00630
rosa_chinensis	RchiOBHm_Chr1g0337351 RchiOBHm_Chr4g0408701 RchiOBHm_Chr4g0446281
rosa_laevigata	RLG00000005673 RLG00000008640 RLG00000029280 RLG00000029283
rosa_multiflora	Rmu_co8341103.1_g000001 Rmu_co8350441.1_g000001 Rmu_co8408813.1_g000001 Rmu_co8519167.1_g000003 Rmu_co8522047.1_g000002 Rmu_sc0002266.1_g000007 Rmu_sc0003060.1_g000002 Rmu_sc0005878.1_g000023 Rmu_sc0021927.1_g000001
rosa_roxburghii	Rroxscaffold_4G00314450 Rroxscaffold_4G00314490 Rroxscaffold_5G00353060 Rroxscaffold_5G00386720
rosa_rugosa	Rorug01G0134600.1 Rorug01G0134800.1 Rorug04G0086900 Rorug04G0369600 Rorug04G0369600
rosa_samantha	Rh1AG153600 Rh1BG122900 Rh1BG123100 Rh1CG144600 Rh1DG161300 Rh1DG161500 Rh4AG431500 Rh4BG148400 Rh4BG440900 Rh4CG159100 Rh4CG458200 Rh4DG144000 Rh4DG439400
rosa_wichuraiana	Rw1G012580 Rw4G012370 Rw4G036850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	855
AciI	CCGC	5 cut(s)	100, 275, 340, 701, 739
AclWI	GGATC	4 cut(s)	40, 182, 529, 542
AcsI	RAATTY	1 cut(s)	858
AfaI	GTAC	1 cut(s)	845
AfiI	CCNNNNNNNGG	3 cut(s)	132, 661, 700
AgsI	TTSAA	2 cut(s)	321, 643
AjnI	CCWGG	2 cut(s)	92, 810
AjuI	GAANNNNNNNTTGG	2 cut(s)	343, 375
AleI	CACNNNNGTG	1 cut(s)	918
AloI	GAACNNNNNNTCC	2 cut(s)	507, 539
AluBI	AGCT	5 cut(s)	3, 63, 262, 502, 577
AluI	AGCT	5 cut(s)	3, 63, 262, 502, 577
Alw21I	GWGCWC	2 cut(s)	221, 579
Alw26I	GTCTC	1 cut(s)	159
AlwI	GGATC	4 cut(s)	40, 182, 529, 542
AlwNI	CAGNNNCTG	1 cut(s)	817
Ama87I	CYCGRG	1 cut(s)	416
AoxI	GGCC	4 cut(s)	272, 337, 585, 892
ApeKI	GCWGC	4 cut(s)	262, 474, 627, 751
ApoI	RAATTY	1 cut(s)	858
AspLEI	GCGC	1 cut(s)	900
AspS9I	GGNCC	3 cut(s)	586, 865, 892
AsuHPI	GGTGA	2 cut(s)	315, 613
AvaI	CYCGRG	1 cut(s)	416
AvaII	GGWCC	1 cut(s)	865
AxyI	CCTNAGG	1 cut(s)	825
BaeGI	GKGCMC	1 cut(s)	370
BamHI	GGATCC	1 cut(s)	534
BanII	GRGCYC	1 cut(s)	579
Bbv12I	GWGCWC	2 cut(s)	221, 579
BbvI	GCAGC	4 cut(s)	249, 486, 639, 738
BccI	CCATC	4 cut(s)	207, 534, 565, 774
BceAI	ACGGC	1 cut(s)	72
BciT130I	CCWGG	2 cut(s)	94, 812
BcoDI	GTCTC	1 cut(s)	159
BfaI	CTAG	1 cut(s)	380
BfmI	CTRYAG	2 cut(s)	263, 752
BfuAI	ACCTGC	1 cut(s)	855
BisI	GCNGC	6 cut(s)	263, 275, 340, 475, 628, 752
BlsI	GCNGC	6 cut(s)	264, 276, 341, 476, 629, 753
Bme1390I	CCNGG	2 cut(s)	94, 812
Bme18I	GGWCC	1 cut(s)	865
BmeT110I	CYCGRG	1 cut(s)	416
BmgT120I	GGNCC	3 cut(s)	586, 865, 892
BmiI	GGNNCC	4 cut(s)	98, 536, 588, 653
BmrFI	CCNGG	2 cut(s)	94, 812
BmsI	GCATC	2 cut(s)	74, 135
BplI	GAGNNNNNCTC	2 cut(s)	865, 897
BpmI	CTGGAG	2 cut(s)	98, 482
Bsa29I	ATCGAT	1 cut(s)	27
BsaJI	CCNNGG	3 cut(s)	92, 530, 811
BsaXI	ACNNNNNCTCC	2 cut(s)	502, 532
Bsc4I	CCNNNNNNNGG	3 cut(s)	132, 661, 700
Bse1I	ACTGG	1 cut(s)	469
Bse21I	CCTNAGG	1 cut(s)	825
Bse3DI	GCAATG	1 cut(s)	62
BseBI	CCWGG	2 cut(s)	94, 812
BseCI	ATCGAT	1 cut(s)	27
BseDI	CCNNGG	3 cut(s)	92, 530, 811
BseGI	GGATG	6 cut(s)	114, 218, 488, 526, 576, 769
BseLI	CCNNNNNNNGG	3 cut(s)	132, 661, 700
BseMI	GCAATG	1 cut(s)	62
BseMII	CTCAG	3 cut(s)	149, 611, 839
BseNI	ACTGG	1 cut(s)	469
BseRI	GAGGAG	1 cut(s)	644
BseSI	GKGCMC	1 cut(s)	370
BseXI	GCAGC	4 cut(s)	249, 486, 639, 738
BsgI	GTGCAG	5 cut(s)	446, 493, 572, 803, 833
Bsh1285I	CGRYCG	1 cut(s)	565
BshFI	GGCC	4 cut(s)	274, 339, 587, 894
BshVI	ATCGAT	1 cut(s)	27
BsiEI	CGRYCG	1 cut(s)	565
BsiHKAI	GWGCWC	2 cut(s)	221, 579
BsiHKCI	CYCGRG	1 cut(s)	416
BsiSI	CCGG	1 cut(s)	103
BslFI	GGGAC	2 cut(s)	75, 828
BslI	CCNNNNNNNGG	3 cut(s)	132, 661, 700
BsmAI	GTCTC	1 cut(s)	159
BsmFI	GGGAC	2 cut(s)	75, 828
BsmI	GAATGC	1 cut(s)	798
BsnI	GGCC	4 cut(s)	274, 339, 587, 894
BsoBI	CYCGRG	1 cut(s)	416
Bsp1286I	GDGCHC	3 cut(s)	221, 370, 579
Bsp143I	GATC	5 cut(s)	24, 45, 174, 534, 562
Bsp19I	CCATGG	1 cut(s)	530
BspACI	CCGC	5 cut(s)	100, 275, 340, 701, 739
BspANI	GGCC	4 cut(s)	274, 339, 587, 894
BspCNI	CTCAG	3 cut(s)	150, 612, 838
BspDI	ATCGAT	1 cut(s)	27
BspLI	GGNNCC	4 cut(s)	98, 536, 588, 653
BspMAI	CTGCAG	2 cut(s)	267, 756
BspMI	ACCTGC	1 cut(s)	855
BspPI	GGATC	4 cut(s)	40, 182, 529, 542
BsrDI	GCAATG	1 cut(s)	62
BsrI	ACTGG	1 cut(s)	469
BssECI	CCNNGG	3 cut(s)	92, 530, 811
BssMI	GATC	5 cut(s)	24, 45, 174, 534, 562
BssT1I	CCWWGG	1 cut(s)	530
Bst2UI	CCWGG	2 cut(s)	94, 812
Bst4CI	ACNGT	1 cut(s)	610
BstC8I	GCNNGC	2 cut(s)	344, 896
BstDEI	CTNAG	3 cut(s)	158, 620, 825
BstDSI	CCRYGG	1 cut(s)	530
BstF5I	GGATG	6 cut(s)	114, 218, 488, 526, 576, 769
BstHHI	GCGC	1 cut(s)	900
BstKTI	GATC	5 cut(s)	27, 48, 177, 537, 565
BstMAI	GTCTC	1 cut(s)	159
BstMBI	GATC	5 cut(s)	24, 45, 174, 534, 562
BstMCI	CGRYCG	1 cut(s)	565
BstMWI	GCNNNNNNNGC	2 cut(s)	9, 271
BstNI	CCWGG	2 cut(s)	94, 812
BstNSI	RCATGY	1 cut(s)	233
BstSCI	CCNGG	2 cut(s)	92, 810
BstSFI	CTRYAG	2 cut(s)	263, 752
BstSLI	GKGCMC	1 cut(s)	370
BstV1I	GCAGC	4 cut(s)	249, 486, 639, 738
BstX2I	RGATCY	1 cut(s)	534
BstXI	CCANNNNNNTGG	1 cut(s)	297
BstYI	RGATCY	1 cut(s)	534
Bsu15I	ATCGAT	1 cut(s)	27
Bsu36I	CCTNAGG	1 cut(s)	825
BsuRI	GGCC	4 cut(s)	274, 339, 587, 894
BsuTUI	ATCGAT	1 cut(s)	27
BtgI	CCRYGG	1 cut(s)	530
BtsCI	GGATG	6 cut(s)	114, 218, 488, 526, 576, 769
BtsI	GCAGTG	1 cut(s)	761
BtsIMutI	CAGTG	2 cut(s)	476, 761
BveI	ACCTGC	1 cut(s)	855
Cac8I	GCNNGC	2 cut(s)	344, 896
CaiI	CAGNNNCTG	1 cut(s)	817
CfoI	GCGC	1 cut(s)	900
Cfr13I	GGNCC	3 cut(s)	586, 865, 892
ClaI	ATCGAT	1 cut(s)	27
Csp6I	GTAC	1 cut(s)	844
CviAII	CATG	5 cut(s)	190, 230, 531, 661, 748
CviQI	GTAC	1 cut(s)	844
DdeI	CTNAG	3 cut(s)	158, 620, 825
DpnI	GATC	5 cut(s)	26, 47, 176, 536, 564
DpnII	GATC	5 cut(s)	24, 45, 174, 534, 562
Ecl136II	GAGCTC	1 cut(s)	577
Eco130I	CCWWGG	1 cut(s)	530
Eco24I	GRGCYC	1 cut(s)	579
Eco47I	GGWCC	1 cut(s)	865
Eco53kI	GAGCTC	1 cut(s)	577
Eco81I	CCTNAGG	1 cut(s)	825
Eco88I	CYCGRG	1 cut(s)	416
EcoICRI	GAGCTC	1 cut(s)	577
EcoRII	CCWGG	2 cut(s)	92, 810
EcoT14I	CCWWGG	1 cut(s)	530
EcoT38I	GRGCYC	1 cut(s)	579
ErhI	CCWWGG	1 cut(s)	530
FaeI	CATG	5 cut(s)	193, 233, 534, 664, 751
FaqI	GGGAC	2 cut(s)	75, 828
FatI	CATG	5 cut(s)	189, 229, 530, 660, 747
Fnu4HI	GCNGC	6 cut(s)	263, 275, 340, 475, 628, 752
FokI	GGATG	6 cut(s)	121, 225, 475, 513, 583, 756
FriOI	GRGCYC	1 cut(s)	579
Fsp4HI	GCNGC	6 cut(s)	263, 275, 340, 475, 628, 752
FspBI	CTAG	1 cut(s)	380
GlaI	GCGC	1 cut(s)	899
GluI	GCNGC	6 cut(s)	263, 275, 340, 475, 628, 752
GsuI	CTGGAG	2 cut(s)	98, 482
HaeIII	GGCC	4 cut(s)	274, 339, 587, 894
HapII	CCGG	1 cut(s)	103
HhaI	GCGC	1 cut(s)	900
Hin1II	CATG	5 cut(s)	193, 233, 534, 664, 751
Hin6I	GCGC	1 cut(s)	898
HinP1I	GCGC	1 cut(s)	898
HinfI	GANTC	5 cut(s)	38, 152, 202, 783, 874
HpaII	CCGG	1 cut(s)	103
HphI	GGTGA	2 cut(s)	315, 613
Hpy188I	TCNGA	3 cut(s)	159, 621, 873
Hpy188III	TCNNGA	1 cut(s)	863
HpyAV	CCTTC	2 cut(s)	300, 878
HpyCH4III	ACNGT	1 cut(s)	610
HpyCH4IV	ACGT	1 cut(s)	517
HpyCH4V	TGCA	9 cut(s)	148, 265, 463, 474, 553, 754, 805, 820, 850
HpyF10VI	GCNNNNNNNGC	2 cut(s)	9, 271
HpyF3I	CTNAG	3 cut(s)	158, 620, 825
HpySE526I	ACGT	1 cut(s)	517
Hsp92II	CATG	5 cut(s)	193, 233, 534, 664, 751
HspAI	GCGC	1 cut(s)	898
Kzo9I	GATC	5 cut(s)	24, 45, 174, 534, 562
LmnI	GCTCC	4 cut(s)	224, 574, 582, 657
Lsp1109I	GCAGC	4 cut(s)	249, 486, 639, 738
LweI	GCATC	2 cut(s)	74, 135
MaeI	CTAG	1 cut(s)	380
MaeII	ACGT	1 cut(s)	517
MaeIII	GTNAC	2 cut(s)	5, 240
MalI	GATC	5 cut(s)	26, 47, 176, 536, 564
MboI	GATC	5 cut(s)	24, 45, 174, 534, 562
MboII	GAAGA	1 cut(s)	292
MflI	RGATCY	1 cut(s)	534
MhlI	GDGCHC	3 cut(s)	221, 370, 579
MluCI	AATT	2 cut(s)	445, 858
MlyI	GAGTC	3 cut(s)	47, 161, 883
MmeI	TCCRAC	1 cut(s)	246
MseI	TTAA	3 cut(s)	68, 169, 325
MslI	CAYNNNNRTG	1 cut(s)	918
MspA1I	CMGCKG	1 cut(s)	701
MspI	CCGG	1 cut(s)	103
MspR9I	CCNGG	2 cut(s)	94, 812
Mva1269I	GAATGC	1 cut(s)	798
MvaI	CCWGG	2 cut(s)	94, 812
MwoI	GCNNNNNNNGC	2 cut(s)	9, 271
NcoI	CCATGG	1 cut(s)	530
NdeII	GATC	5 cut(s)	24, 45, 174, 534, 562
NlaIII	CATG	5 cut(s)	193, 233, 534, 664, 751
NlaIV	GGNNCC	4 cut(s)	98, 536, 588, 653
NmuCI	GTSAC	1 cut(s)	5
NspI	RCATGY	1 cut(s)	233
OliI	CACNNNNGTG	1 cut(s)	918
PaeR7I	CTCGAG	1 cut(s)	416
PctI	GAATGC	1 cut(s)	798
PfeI	GAWTC	2 cut(s)	202, 783
PkrI	GCNGC	6 cut(s)	264, 276, 341, 476, 629, 753
Ple19I	CGATCG	1 cut(s)	565
PleI	GAGTC	3 cut(s)	46, 160, 882
PpsI	GAGTC	3 cut(s)	46, 160, 882
Psp124BI	GAGCTC	1 cut(s)	579
Psp6I	CCWGG	2 cut(s)	92, 810
PspGI	CCWGG	2 cut(s)	92, 810
PspN4I	GGNNCC	4 cut(s)	98, 536, 588, 653
PspPI	GGNCC	3 cut(s)	586, 865, 892
PspXI	VCTCGAGB	1 cut(s)	416
PstI	CTGCAG	2 cut(s)	267, 756
PstNI	CAGNNNCTG	1 cut(s)	817
PsuI	RGATCY	1 cut(s)	534
PvuI	CGATCG	1 cut(s)	565
RsaI	GTAC	1 cut(s)	845
RsaNI	GTAC	1 cut(s)	844
RseI	CAYNNNNRTG	1 cut(s)	918
SacI	GAGCTC	1 cut(s)	579
SaqAI	TTAA	3 cut(s)	68, 169, 325
SatI	GCNGC	6 cut(s)	263, 275, 340, 475, 628, 752
Sau3AI	GATC	5 cut(s)	24, 45, 174, 534, 562
Sau96I	GGNCC	3 cut(s)	586, 865, 892
SchI	GAGTC	3 cut(s)	47, 161, 883
ScrFI	CCNGG	2 cut(s)	94, 812
SduI	GDGCHC	3 cut(s)	221, 370, 579
SfaNI	GCATC	2 cut(s)	74, 135
SfcI	CTRYAG	2 cut(s)	263, 752
Sfr274I	CTCGAG	1 cut(s)	416
SinI	GGWCC	1 cut(s)	865
SlaI	CTCGAG	1 cut(s)	416
SmiMI	CAYNNNNRTG	1 cut(s)	918
SmlI	CTYRAG	1 cut(s)	416
SmoI	CTYRAG	1 cut(s)	416
Sse9I	AATT	2 cut(s)	445, 858
SsiI	CCGC	5 cut(s)	100, 275, 340, 701, 739
SspMI	CTAG	1 cut(s)	380
SstI	GAGCTC	1 cut(s)	579
StyD4I	CCNGG	2 cut(s)	92, 810
StyI	CCWWGG	1 cut(s)	530
TaaI	ACNGT	1 cut(s)	610
TaiI	ACGT	1 cut(s)	520
TaqI	TCGA	3 cut(s)	27, 417, 561
TasI	AATT	2 cut(s)	445, 858
TauI	GCSGC	2 cut(s)	277, 342
TfiI	GAWTC	2 cut(s)	202, 783
Tru1I	TTAA	3 cut(s)	68, 169, 325
Tru9I	TTAA	3 cut(s)	68, 169, 325
TscAI	CASTG	2 cut(s)	476, 761
TseFI	GTSAC	1 cut(s)	5
TseI	GCWGC	4 cut(s)	262, 474, 627, 751
Tsp45I	GTSAC	1 cut(s)	5
TspDTI	ATGAA	3 cut(s)	73, 125, 796
TspGWI	ACGGA	2 cut(s)	50, 195
TspRI	CASTG	2 cut(s)	476, 761
VpaK11BI	GGWCC	1 cut(s)	865
XapI	RAATTY	1 cut(s)	858
XceI	RCATGY	1 cut(s)	233
XcmI	CCANNNNNNNNNTGG	1 cut(s)	297
XhoI	CTCGAG	1 cut(s)	416
XspI	CTAG	1 cut(s)	380

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.