Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8519167.1

Orthogroup ID

OG0000929

Physical Location & Seq

Genomic Coordinates Forward (+)

4677 .. 5381

Gene Structure 705 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8519167.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

atggcgcacaggttgctaaggaatgtggaggcggacggttgggagcgatcggacttccccatcatctgcgagtcatgcctcggcgacaacccttacgttcgcatgaccaaagccgattacgacaaagagtgcaagatctgcacccgccccttcaccgtcttccggtggcgccccggccgcgacgcccgcttcaagaagtccgagatttgccagacctgcagcaagttgaagaacgtctgccaagtctgcctcctcgatctcgactacggcctccccgtccaggtccgcgacaccgccctcgccatcggctccgacgacgccattcccaagagcgacgtcaatcgcgagttcttcgccgaggaacatgaccgaaaggctcgggctggaattgattacgaatcgtcgtacgggaaggcgaggccgaatgacacgattctgaagctgcagagaacgacgccgtattacaagaggaaccgggcgcatgtgtgcagtttctatattcggggcgagtgcactagaggtgctgagtgcccttaccggcacgagatgcccgtcactggcgagctgtcacagcaaaatatcaaagatcgatactacgggtatacatgcttttcctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000387 GO:0000398 GO:0000974 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008380 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0017069 GO:0017070 GO:0022607 GO:0022613 GO:0022618 GO:0032991 GO:0034622 GO:0034641 GO:0036002 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0051704 GO:0051707 GO:0065003 GO:0071006 GO:0071007 GO:0071012 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:0098542 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1 Torus

Protein Analysis

205

Amino Acids

23.81

Weight (kDa)

8.55

Isoelectric Point (pI)

43.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000929)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07360 AT2G29580 AT5G04210 AT5G07060 AT5G07060
fragaria_vesca	FvH4_4g11590 FvH4_4g11590 FvH4_4g11590 FvH4_4g11590 FvH4_4g11590 FvH4_4g36530 FvH4_4g36530 FvH4_7g07370
malus_domestica	MD01G1110000.v1.1 MD07G1175800.v1.1 MD16G1006600.v1.1
prunus_persica	Prupe.2G214800_v2.0.a1 Prupe.8G143100_v2.0.a1 Prupe.8G143100_v2.0.a1 Prupe.8G143100_v2.0.a1
pyrus_communis	pycom01g13690 pycom07g17000 pycom16g00630
rosa_chinensis	RchiOBHm_Chr1g0337351 RchiOBHm_Chr4g0408701 RchiOBHm_Chr4g0446281
rosa_laevigata	RLG00000005673 RLG00000008640 RLG00000029280 RLG00000029283
rosa_multiflora	Rmu_co8341103.1_g000001 Rmu_co8350441.1_g000001 Rmu_co8408813.1_g000001 Rmu_co8519167.1_g000003 Rmu_co8522047.1_g000002 Rmu_sc0002266.1_g000007 Rmu_sc0003060.1_g000002 Rmu_sc0005878.1_g000023 Rmu_sc0021927.1_g000001
rosa_roxburghii	Rroxscaffold_4G00314450 Rroxscaffold_4G00314490 Rroxscaffold_5G00353060 Rroxscaffold_5G00386720
rosa_rugosa	Rorug01G0134600.1 Rorug01G0134800.1 Rorug04G0086900 Rorug04G0369600 Rorug04G0369600
rosa_samantha	Rh1AG153600 Rh1BG122900 Rh1BG123100 Rh1CG144600 Rh1DG161300 Rh1DG161500 Rh4AG431500 Rh4BG148400 Rh4BG440900 Rh4CG159100 Rh4CG458200 Rh4DG144000 Rh4DG439400
rosa_wichuraiana	Rw1G012580 Rw4G012370 Rw4G036850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	339
Acc36I	ACCTGC	1 cut(s)	224
AccB1I	GGYRCC	1 cut(s)	168
AccI	GTMKAC	1 cut(s)	602
AccII	CGCG	3 cut(s)	180, 288, 345
AciI	CCGC	6 cut(s)	32, 145, 178, 187, 286, 294
AcoI	YGGCCR	1 cut(s)	175
AcuI	CTGAAG	1 cut(s)	458
AcyI	GRCGYC	5 cut(s)	169, 183, 318, 336, 455
AfaI	GTAC	1 cut(s)	407
AfiI	CCNNNNNNNGG	3 cut(s)	162, 280, 557
AgsI	TTSAA	2 cut(s)	193, 229
AjnI	CCWGG	1 cut(s)	279
AluBI	AGCT	2 cut(s)	442, 565
AluI	AGCT	2 cut(s)	442, 565
Alw21I	GWGCWC	1 cut(s)	515
Alw44I	GTGCAC	1 cut(s)	511
Ama87I	CYCGRG	1 cut(s)	378
AoxI	GGCC	3 cut(s)	175, 268, 419
ApaLI	GTGCAC	1 cut(s)	511
ApeKI	GCWGC	2 cut(s)	219, 442
AspLEI	GCGC	3 cut(s)	7, 171, 481
AspS9I	GGNCC	1 cut(s)	283
AsuC2I	CCSGG	2 cut(s)	174, 476
AsuHPI	GGTGA	1 cut(s)	145
AvaI	CYCGRG	1 cut(s)	378
AvaII	GGWCC	1 cut(s)	283
BaeGI	GKGCMC	2 cut(s)	515, 533
BanI	GGYRCC	1 cut(s)	168
BauI	CACGAG	1 cut(s)	542
BbsI	GAAGAC	1 cut(s)	151
Bbv12I	GWGCWC	1 cut(s)	515
BbvI	GCAGC	2 cut(s)	231, 429
BccI	CCATC	2 cut(s)	68, 311
BceAI	ACGGC	2 cut(s)	283, 442
BciT130I	CCWGG	1 cut(s)	281
BcnI	CCSGG	2 cut(s)	174, 476
BfaI	CTAG	1 cut(s)	516
BfmI	CTRYAG	2 cut(s)	217, 443
BfoI	RGCGCY	1 cut(s)	172
BfuAI	ACCTGC	1 cut(s)	224
BglII	AGATCT	1 cut(s)	135
BisI	GCNGC	3 cut(s)	178, 220, 443
BlsI	GCNGC	3 cut(s)	179, 221, 444
Bme1390I	CCNGG	3 cut(s)	174, 281, 476
Bme18I	GGWCC	1 cut(s)	283
BmeT110I	CYCGRG	1 cut(s)	378
BmgT120I	GGNCC	1 cut(s)	283
BmiI	GGNNCC	3 cut(s)	170, 310, 473
BmrFI	CCNGG	3 cut(s)	174, 281, 476
BmsI	GCATC	1 cut(s)	537
BpiI	GAAGAC	1 cut(s)	151
Bpu10I	CCTNAGC	1 cut(s)	17
BpuMI	CCSGG	2 cut(s)	174, 476
Bsa29I	ATCGAT	1 cut(s)	589
BsaHI	GRCGYC	5 cut(s)	169, 183, 318, 336, 455
BsaJI	CCNNGG	3 cut(s)	79, 172, 357
BsaWI	WCCGGW	1 cut(s)	162
Bsc4I	CCNNNNNNNGG	3 cut(s)	162, 280, 557
Bse118I	RCCGGY	1 cut(s)	537
Bse1I	ACTGG	1 cut(s)	562
BseBI	CCWGG	1 cut(s)	281
BseCI	ATCGAT	1 cut(s)	589
BseDI	CCNNGG	3 cut(s)	79, 172, 357
BseLI	CCNNNNNNNGG	3 cut(s)	162, 280, 557
BseMII	CTCAG	1 cut(s)	516
BseNI	ACTGG	1 cut(s)	562
BseRI	GAGGAG	1 cut(s)	242
BseSI	GKGCMC	2 cut(s)	515, 533
BseX3I	CGGCCG	1 cut(s)	175
BseXI	GCAGC	2 cut(s)	231, 429
BsgI	GTGCAG	2 cut(s)	124, 508
Bsh1236I	CGCG	3 cut(s)	180, 288, 345
Bsh1285I	CGRYCG	2 cut(s)	50, 178
BshFI	GGCC	3 cut(s)	177, 270, 421
BshNI	GGYRCC	1 cut(s)	168
BshVI	ATCGAT	1 cut(s)	589
BsiEI	CGRYCG	2 cut(s)	50, 178
BsiHKAI	GWGCWC	1 cut(s)	515
BsiHKCI	CYCGRG	1 cut(s)	378
BsiSI	CCGG	4 cut(s)	163, 174, 475, 538
BsiWI	CGTACG	1 cut(s)	405
BslI	CCNNNNNNNGG	3 cut(s)	162, 280, 557
BsnI	GGCC	3 cut(s)	177, 270, 421
BsoBI	CYCGRG	1 cut(s)	378
Bsp1286I	GDGCHC	2 cut(s)	515, 533
Bsp143I	GATC	4 cut(s)	47, 135, 256, 586
Bsp68I	TCGCGA	1 cut(s)	345
BspACI	CCGC	6 cut(s)	32, 145, 178, 187, 286, 294
BspANI	GGCC	3 cut(s)	177, 270, 421
BspCNI	CTCAG	1 cut(s)	517
BspDI	ATCGAT	1 cut(s)	589
BspFNI	CGCG	3 cut(s)	180, 288, 345
BspLI	GGNNCC	3 cut(s)	170, 310, 473
BspMAI	CTGCAG	2 cut(s)	221, 447
BspMI	ACCTGC	1 cut(s)	224
BspT107I	GGYRCC	1 cut(s)	168
BsrFI	RCCGGY	1 cut(s)	537
BsrI	ACTGG	1 cut(s)	562
BssAI	RCCGGY	1 cut(s)	537
BssECI	CCNNGG	3 cut(s)	79, 172, 357
BssMI	GATC	4 cut(s)	47, 135, 256, 586
BssNAI	GTATAC	1 cut(s)	603
BssNI	GRCGYC	5 cut(s)	169, 183, 318, 336, 455
BssSI	CACGAG	1 cut(s)	542
Bst1107I	GTATAC	1 cut(s)	603
Bst2BI	CACGAG	1 cut(s)	542
Bst2UI	CCWGG	1 cut(s)	281
Bst4CI	ACNGT	2 cut(s)	38, 157
BstACI	GRCGYC	5 cut(s)	169, 183, 318, 336, 455
BstAPI	GCANNNNNTGC	3 cut(s)	13, 138, 547
BstC8I	GCNNGC	2 cut(s)	187, 563
BstDEI	CTNAG	2 cut(s)	17, 525
BstFNI	CGCG	3 cut(s)	180, 288, 345
BstH2I	RGCGCY	1 cut(s)	172
BstHHI	GCGC	3 cut(s)	7, 171, 481
BstKTI	GATC	4 cut(s)	50, 138, 259, 589
BstMBI	GATC	4 cut(s)	47, 135, 256, 586
BstMCI	CGRYCG	2 cut(s)	50, 178
BstMWI	GCNNNNNNNGC	9 cut(s)	13, 75, 138, 177, 186, 216, 246, 547, 571
BstNI	CCWGG	1 cut(s)	281
BstNSI	RCATGY	2 cut(s)	485, 609
BstSCI	CCNGG	3 cut(s)	172, 279, 474
BstSFI	CTRYAG	2 cut(s)	217, 443
BstSLI	GKGCMC	2 cut(s)	515, 533
BstUI	CGCG	3 cut(s)	180, 288, 345
BstV1I	GCAGC	2 cut(s)	231, 429
BstV2I	GAAGAC	1 cut(s)	151
BstX2I	RGATCY	1 cut(s)	135
BstYI	RGATCY	1 cut(s)	135
BstZ17I	GTATAC	1 cut(s)	603
BstZI	CGGCCG	1 cut(s)	175
Bsu15I	ATCGAT	1 cut(s)	589
BsuRI	GGCC	3 cut(s)	177, 270, 421
BsuTUI	ATCGAT	1 cut(s)	589
BtsIMutI	CAGTG	1 cut(s)	555
BtuMI	TCGCGA	1 cut(s)	345
BveI	ACCTGC	1 cut(s)	224
Cac8I	GCNNGC	2 cut(s)	187, 563
CfoI	GCGC	3 cut(s)	7, 171, 481
Cfr10I	RCCGGY	1 cut(s)	537
Cfr13I	GGNCC	1 cut(s)	283
ClaI	ATCGAT	1 cut(s)	589
CseI	GACGC	3 cut(s)	191, 326, 463
Csp6I	GTAC	1 cut(s)	406
CviAII	CATG	5 cut(s)	75, 103, 365, 482, 606
CviJI	RGCY	9 cut(s)	113, 177, 270, 309, 377, 383, 421, 442, 565
CviKI_1	RGCY	9 cut(s)	113, 177, 270, 309, 377, 383, 421, 442, 565
CviQI	GTAC	1 cut(s)	406
DdeI	CTNAG	2 cut(s)	17, 525
DinI	GGCGCC	1 cut(s)	170
DpnI	GATC	4 cut(s)	49, 137, 258, 588
DpnII	GATC	4 cut(s)	47, 135, 256, 586
EaeI	YGGCCR	1 cut(s)	175
EagI	CGGCCG	1 cut(s)	175
EciI	GGCGGA	1 cut(s)	47
EclXI	CGGCCG	1 cut(s)	175
Eco47I	GGWCC	1 cut(s)	283
Eco52I	CGGCCG	1 cut(s)	175
Eco57I	CTGAAG	1 cut(s)	458
Eco88I	CYCGRG	1 cut(s)	378
EcoRII	CCWGG	1 cut(s)	279
EgeI	GGCGCC	1 cut(s)	170
EheI	GGCGCC	1 cut(s)	170
FaeI	CATG	5 cut(s)	78, 106, 368, 485, 609
FaiI	YATR	7 cut(s)	76, 104, 366, 483, 498, 603, 607
FatI	CATG	5 cut(s)	74, 102, 364, 481, 605
FauI	CCCGC	2 cut(s)	152, 194
FblI	GTMKAC	1 cut(s)	602
Fnu4HI	GCNGC	3 cut(s)	178, 220, 443
Fsp4HI	GCNGC	3 cut(s)	178, 220, 443
FspBI	CTAG	1 cut(s)	516
GlaI	GCGC	3 cut(s)	6, 170, 480
GluI	GCNGC	3 cut(s)	178, 220, 443
HaeII	RGCGCY	1 cut(s)	172
HaeIII	GGCC	3 cut(s)	177, 270, 421
HapII	CCGG	4 cut(s)	163, 174, 475, 538
HgaI	GACGC	3 cut(s)	191, 326, 463
HhaI	GCGC	3 cut(s)	7, 171, 481
Hin1I	GRCGYC	5 cut(s)	169, 183, 318, 336, 455
Hin1II	CATG	5 cut(s)	78, 106, 368, 485, 609
Hin6I	GCGC	3 cut(s)	5, 169, 479
HinP1I	GCGC	3 cut(s)	5, 169, 479
HinfI	GANTC	3 cut(s)	71, 398, 433
HpaII	CCGG	4 cut(s)	163, 174, 475, 538
HphI	GGTGA	1 cut(s)	145
Hpy166II	GTNNAC	2 cut(s)	513, 603
Hpy188I	TCNGA	4 cut(s)	52, 202, 313, 438
Hpy188III	TCNNGA	3 cut(s)	193, 260, 344
Hpy8I	GTNNAC	2 cut(s)	513, 603
Hpy99I	CGWCG	6 cut(s)	185, 317, 320, 338, 406, 457
HpyAV	CCTTC	2 cut(s)	160, 406
HpyCH4III	ACNGT	2 cut(s)	38, 157
HpyCH4IV	ACGT	3 cut(s)	96, 234, 336
HpyCH4V	TGCA	6 cut(s)	132, 141, 219, 445, 489, 513
HpyF10VI	GCNNNNNNNGC	9 cut(s)	13, 75, 138, 177, 186, 216, 246, 547, 571
HpyF3I	CTNAG	2 cut(s)	17, 525
HpySE526I	ACGT	3 cut(s)	96, 234, 336
Hsp92I	GRCGYC	5 cut(s)	169, 183, 318, 336, 455
Hsp92II	CATG	5 cut(s)	78, 106, 368, 485, 609
HspAI	GCGC	3 cut(s)	5, 169, 479
KasI	GGCGCC	1 cut(s)	168
Kzo9I	GATC	4 cut(s)	47, 135, 256, 586
LmnI	GCTCC	2 cut(s)	43, 314
Lsp1109I	GCAGC	2 cut(s)	231, 429
LweI	GCATC	1 cut(s)	537
MaeI	CTAG	1 cut(s)	516
MaeII	ACGT	3 cut(s)	96, 234, 336
MaeIII	GTNAC	2 cut(s)	553, 567
MalI	GATC	4 cut(s)	49, 137, 258, 588
MboI	GATC	4 cut(s)	47, 135, 256, 586
MboII	GAAGA	3 cut(s)	151, 241, 343
MflI	RGATCY	1 cut(s)	135
MhlI	GDGCHC	2 cut(s)	515, 533
MluCI	AATT	1 cut(s)	387
Mly113I	GGCGCC	1 cut(s)	169
MlyI	GAGTC	1 cut(s)	80
MmeI	TCCRAC	1 cut(s)	336
MspI	CCGG	4 cut(s)	163, 174, 475, 538
MspR9I	CCNGG	3 cut(s)	174, 281, 476
MvaI	CCWGG	1 cut(s)	281
MvnI	CGCG	3 cut(s)	180, 288, 345
MwoI	GCNNNNNNNGC	9 cut(s)	13, 75, 138, 177, 186, 216, 246, 547, 571
NarI	GGCGCC	1 cut(s)	169
NciI	CCSGG	2 cut(s)	174, 476
NdeII	GATC	4 cut(s)	47, 135, 256, 586
NlaIII	CATG	5 cut(s)	78, 106, 368, 485, 609
NlaIV	GGNNCC	3 cut(s)	170, 310, 473
NmeAIII	GCCGAG	2 cut(s)	60, 382
NmuCI	GTSAC	2 cut(s)	553, 567
NruI	TCGCGA	1 cut(s)	345
NspI	RCATGY	2 cut(s)	485, 609
PcsI	WCGNNNNNNNCGW	4 cut(s)	273, 312, 342, 549
PfeI	GAWTC	2 cut(s)	398, 433
Pfl23II	CGTACG	1 cut(s)	405
PkrI	GCNGC	3 cut(s)	179, 221, 444
Ple19I	CGATCG	1 cut(s)	50
PleI	GAGTC	1 cut(s)	79
PluTI	GGCGCC	1 cut(s)	172
PpsI	GAGTC	1 cut(s)	79
Psp6I	CCWGG	1 cut(s)	279
PspGI	CCWGG	1 cut(s)	279
PspLI	CGTACG	1 cut(s)	405
PspN4I	GGNNCC	3 cut(s)	170, 310, 473
PspPI	GGNCC	1 cut(s)	283
PstI	CTGCAG	2 cut(s)	221, 447
PsuI	RGATCY	1 cut(s)	135
PvuI	CGATCG	1 cut(s)	50
RruI	TCGCGA	1 cut(s)	345
RsaI	GTAC	1 cut(s)	407
RsaNI	GTAC	1 cut(s)	406
SatI	GCNGC	3 cut(s)	178, 220, 443
Sau3AI	GATC	4 cut(s)	47, 135, 256, 586
Sau96I	GGNCC	1 cut(s)	283
SchI	GAGTC	1 cut(s)	80
ScrFI	CCNGG	3 cut(s)	174, 281, 476
SduI	GDGCHC	2 cut(s)	515, 533
SetI	ASST	9 cut(s)	14, 99, 218, 237, 285, 339, 444, 523, 567
SfaNI	GCATC	1 cut(s)	537
SfcI	CTRYAG	2 cut(s)	217, 443
SfoI	GGCGCC	1 cut(s)	170
SinI	GGWCC	1 cut(s)	283
Sse9I	AATT	1 cut(s)	387
SsiI	CCGC	6 cut(s)	32, 145, 178, 187, 286, 294
SspDI	GGCGCC	1 cut(s)	168
SspMI	CTAG	1 cut(s)	516
StyD4I	CCNGG	3 cut(s)	172, 279, 474
TaaI	ACNGT	2 cut(s)	38, 157
TaiI	ACGT	3 cut(s)	99, 237, 339
TaqI	TCGA	3 cut(s)	255, 261, 589
TaqII	GACCGA	1 cut(s)	384
TasI	AATT	1 cut(s)	387
TauI	GCSGC	1 cut(s)	180
TfiI	GAWTC	2 cut(s)	398, 433
TscAI	CASTG	1 cut(s)	562
TseFI	GTSAC	2 cut(s)	553, 567
TseI	GCWGC	2 cut(s)	219, 442
Tsp45I	GTSAC	2 cut(s)	553, 567
TspRI	CASTG	1 cut(s)	562
VneI	GTGCAC	1 cut(s)	511
VpaK11BI	GGWCC	1 cut(s)	283
XceI	RCATGY	2 cut(s)	485, 609
XmiI	GTMKAC	1 cut(s)	602
XspI	CTAG	1 cut(s)	516
ZraI	GACGTC	1 cut(s)	337

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.