Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0000929

Physical Location & Seq

Genomic Coordinates Reverse (-)

68969510 .. 68972243

Gene Structure 2734 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG458200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1491 bp

ATGGCGCACAGGTTGCTCAGGAATGTGGAGGCAGATGGTTGGGAACGGTCAGACTTCCCCATCATCTGCGAGTCCTGCCTGGGAGACAATCCCTATGTTCGCATGACGAAAGCTGATTATGACAAGGAGTGCAAGACTTGTACTCGGCCGTTCACCGTTTTCCGGTGGAGGCCTGGCCGTGATGCCCGATTCAAGAAGACGGAGATTTGCCAGACGTGCAGTAAGTTGAAGAATGTCTGTCAAGTTTGCATCTTGGACCTGGAATATGGCTTGCCAGTACAGGTTCGAGACACTGCTATGGCTATCAACTCCACCGATGTGATTCCCAAGAGCGACGTCAATAGGGAGTTTTTTGCCGAGGAGCATGACCGAAAGGCTAGAGCCGGTATAGATTACGAATCTTCCTATGGGAAAGCTCGGCCCAGTGACACTATTCTGAAGCTTCAAAGAACAGCACCCTATTACAAAAGAAACAGAGCACATGTCTGCAGTTTCTACATTCGGGGTGAGTGCACAAGAGGCGCTGAGTGTCCTTACAGGCACGAAATGCCCATAACTGGGGAGTTGGCACAACAAAACATTAAAGATCGTTACTATGGAGTCAATGATCCAGTCGCGATGAAGCTACTGAACAAGGCTGGAGAGATGCCCTCCCTAGAACCTCCCGAGGATGAAAGCATCAGAACCCTATACGTAGGTGGGCTTGATGGGAGAATTACAGAGCAGGATCTAAGGGATAACTTTTATGCTCATGGTGAAATAGAGTCTGTTAGGATGGTACTCCAACGAGCTTGTGCTTTCGTAACCTACACAACAAGAGAAGGTGCAGAAAAGGCTGCAGAAGAACTCTCCAATAAACTGGTAATAAAGGGTTTGAGATTGAAGTTAATGTGGGGTAGGCCCCAAGCACCAAAACAGGACTCAGAGGGCACAGATGAAGCTAGGCAGCAGGCAGTGGCTCATAGTGGATTGTTGCCTCGAGCGGTGATATCACAACAGCAGAACCAAATACAAGACCAATCTGCACCAGTGCAGCACTACTACAACATGCCACCTCCACCATCTTCACAGGAGAGGACATTTTATCCGTCAATGGATCCTCAAAGAATGGGTGCTGTTGTTCGATCTCAAGATGGAGCTCCAAGTGGGCCCACGGGGTCCAGTGAGAACAAATCTGGTTCAGAGAGGCAGCATTATGCTTTTCAAACCATGGCTCCACCACATGGCCATTATCATCAGCAGCAGTTTTATCCTCCCCCATATACAGGTTATATGCCTCCGCCGCCACCAGCTTACCAACAACAATACCCTCCACAATATCATGCTACAGTGCCTCCACAACAGTCCTTGCCAATGAACCAACAGTACCAGCAGCATTCTGCAACACCCTCAGCTTCTACATCTTCAGCACCCGCAGCTTCAAGTTCTGGACCTTCAGAGTCCGCACCATCCGAATCTGGATCTGCACCAACTGCATCATCACAGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000387 GO:0000398 GO:0000974 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008380 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0017069 GO:0017070 GO:0022607 GO:0022613 GO:0022618 GO:0032991 GO:0034622 GO:0034641 GO:0036002 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0051704 GO:0051707 GO:0065003 GO:0071006 GO:0071007 GO:0071012 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:0098542 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1 Torus

Protein Analysis

496

Amino Acids

55.63

Weight (kDa)

7.18

Isoelectric Point (pI)

71.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
STL11_N	PF21369	20 - 108	1.8e-29	STL11, N-terminal
Torus	PF16131	133 - 193	1.4e-06	Torus domain
zf-CCCH_RBM22	PF25584	157 - 183	1.7e-11	RBM22 CCCH zinc finger domain
RRM_1	PF00076	230 - 288	6.7e-12	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000929)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07360 AT2G29580 AT5G04210 AT5G07060 AT5G07060
fragaria_vesca	FvH4_4g11590 FvH4_4g11590 FvH4_4g11590 FvH4_4g11590 FvH4_4g11590 FvH4_4g36530 FvH4_4g36530 FvH4_7g07370
malus_domestica	MD01G1110000.v1.1 MD07G1175800.v1.1 MD16G1006600.v1.1
prunus_persica	Prupe.2G214800_v2.0.a1 Prupe.8G143100_v2.0.a1 Prupe.8G143100_v2.0.a1 Prupe.8G143100_v2.0.a1
pyrus_communis	pycom01g13690 pycom07g17000 pycom16g00630
rosa_chinensis	RchiOBHm_Chr1g0337351 RchiOBHm_Chr4g0408701 RchiOBHm_Chr4g0446281
rosa_laevigata	RLG00000005673 RLG00000008640 RLG00000029280 RLG00000029283
rosa_multiflora	Rmu_co8341103.1_g000001 Rmu_co8350441.1_g000001 Rmu_co8408813.1_g000001 Rmu_co8519167.1_g000003 Rmu_co8522047.1_g000002 Rmu_sc0002266.1_g000007 Rmu_sc0003060.1_g000002 Rmu_sc0005878.1_g000023 Rmu_sc0021927.1_g000001
rosa_roxburghii	Rroxscaffold_4G00314450 Rroxscaffold_4G00314490 Rroxscaffold_5G00353060 Rroxscaffold_5G00386720
rosa_rugosa	Rorug01G0134600.1 Rorug01G0134800.1 Rorug04G0086900 Rorug04G0369600 Rorug04G0369600
rosa_samantha	Rh1AG153600 Rh1BG122900 Rh1BG123100 Rh1CG144600 Rh1DG161300 Rh1DG161500 Rh4AG431500 Rh4BG148400 Rh4BG440900 Rh4CG159100 Rh4CG458200 Rh4DG144000 Rh4DG439400
rosa_wichuraiana	Rw1G012580 Rw4G012370 Rw4G036850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	339
AccB7I	CCANNNNNTGG	1 cut(s)	1223
AccBSI	CCGCTC	1 cut(s)	983
AccII	CGCG	1 cut(s)	617
AciI	CCGC	5 cut(s)	983, 1280, 1283, 1413, 1443
AclWI	GGATC	5 cut(s)	602, 735, 1091, 1104, 1468
AcoI	YGGCCR	3 cut(s)	146, 175, 1225
AcuI	CTGAAG	3 cut(s)	458, 1389, 1419
AcyI	GRCGYC	1 cut(s)	336
AfaI	GTAC	4 cut(s)	142, 279, 780, 1367
AfiI	CCNNNNNNNGG	5 cut(s)	162, 557, 558, 1223, 1265
AflIII	ACRYGT	1 cut(s)	481
AgsI	TTSAA	6 cut(s)	193, 229, 446, 883, 1205, 1422
AjiI	CACGTC	1 cut(s)	216
AjnI	CCWGG	3 cut(s)	78, 172, 258
AleI	CACNNNNGTG	2 cut(s)	317, 1486
Alw21I	GWGCWC	3 cut(s)	481, 515, 1141
Alw26I	GTCTC	2 cut(s)	78, 282
Alw44I	GTGCAC	1 cut(s)	511
AlwI	GGATC	5 cut(s)	602, 735, 1091, 1104, 1468
Ama87I	CYCGRG	2 cut(s)	665, 978
AoxI	GGCC	7 cut(s)	146, 170, 175, 419, 899, 1148, 1225
ApaI	GGGCCC	1 cut(s)	1152
ApaLI	GTGCAC	1 cut(s)	511
ApeKI	GCWGC	7 cut(s)	836, 946, 1033, 1189, 1240, 1372, 1415
AspLEI	GCGC	2 cut(s)	7, 524
AspS9I	GGNCC	7 cut(s)	256, 420, 900, 1148, 1149, 1158, 1430
AsuHPI	GGTGA	4 cut(s)	145, 518, 767, 997
AvaI	CYCGRG	2 cut(s)	665, 978
AvaII	GGWCC	3 cut(s)	256, 1158, 1430
BaeGI	GKGCMC	3 cut(s)	515, 932, 1152
BalI	TGGCCA	1 cut(s)	1227
BamHI	GGATCC	1 cut(s)	1096
BanII	GRGCYC	2 cut(s)	1141, 1152
BbsI	GAAGAC	1 cut(s)	203
Bbv12I	GWGCWC	3 cut(s)	481, 515, 1141
BbvCI	CCTCAGC	1 cut(s)	1390
BbvI	GCAGC	7 cut(s)	823, 958, 1045, 1201, 1252, 1384, 1427
BccI	CCATC	7 cut(s)	29, 68, 701, 769, 1069, 1127, 1456
BceAI	ACGGC	2 cut(s)	133, 162
BciT130I	CCWGG	3 cut(s)	80, 174, 260
BcoDI	GTCTC	2 cut(s)	78, 282
BfaI	CTAG	3 cut(s)	378, 656, 942
BfmI	CTRYAG	3 cut(s)	487, 837, 1326
BfoI	RGCGCY	1 cut(s)	525
BisI	GCNGC	8 cut(s)	837, 947, 1034, 1190, 1241, 1283, 1373, 1416
BlsI	GCNGC	8 cut(s)	838, 948, 1035, 1191, 1242, 1284, 1374, 1417
Bme1390I	CCNGG	3 cut(s)	80, 174, 260
Bme18I	GGWCC	3 cut(s)	256, 1158, 1430
BmeT110I	CYCGRG	2 cut(s)	665, 978
BmgBI	CACGTC	1 cut(s)	216
BmgT120I	GGNCC	7 cut(s)	256, 420, 900, 1148, 1149, 1158, 1430
BmiI	GGNNCC	5 cut(s)	902, 1098, 1150, 1159, 1215
BmrFI	CCNGG	3 cut(s)	80, 174, 260
BmrI	ACTGGG	2 cut(s)	417, 567
BmsI	GCATC	5 cut(s)	172, 258, 636, 687, 1484
BmuI	ACTGGG	2 cut(s)	417, 567
BpiI	GAAGAC	1 cut(s)	203
BplI	GAGNNNNNCTC	2 cut(s)	635, 667
BpmI	CTGGAG	1 cut(s)	660
Bpu10I	CCTNAGC	2 cut(s)	17, 1390
BpuEI	CTTGAG	1 cut(s)	1113
BsaAI	YACGTR	1 cut(s)	694
BsaHI	GRCGYC	1 cut(s)	336
BsaJI	CCNNGG	5 cut(s)	79, 357, 666, 1152, 1209
BsaWI	WCCGGW	1 cut(s)	162
BsaXI	ACNNNNNCTCC	4 cut(s)	1198, 1228, 1318, 1348
Bsc4I	CCNNNNNNNGG	5 cut(s)	162, 557, 558, 1223, 1265
Bse118I	RCCGGY	1 cut(s)	383
Bse1I	ACTGG	7 cut(s)	275, 423, 562, 611, 864, 1028, 1161
BseBI	CCWGG	3 cut(s)	80, 174, 260
BseDI	CCNNGG	5 cut(s)	79, 357, 666, 1152, 1209
BseGI	GGATG	3 cut(s)	676, 780, 1448
BseLI	CCNNNNNNNGG	5 cut(s)	162, 557, 558, 1223, 1265
BseMII	CTCAG	4 cut(s)	31, 516, 936, 1404
BseNI	ACTGG	7 cut(s)	275, 423, 562, 611, 864, 1028, 1161
BseRI	GAGGAG	1 cut(s)	374
BseSI	GKGCMC	3 cut(s)	515, 932, 1152
BseX3I	CGGCCG	1 cut(s)	146
BseXI	GCAGC	7 cut(s)	823, 958, 1045, 1201, 1252, 1384, 1427
BsgI	GTGCAG	5 cut(s)	238, 846, 1008, 1052, 1449
Bsh1236I	CGCG	1 cut(s)	617
Bsh1285I	CGRYCG	1 cut(s)	149
BshFI	GGCC	7 cut(s)	148, 172, 177, 421, 901, 1150, 1227
BsiEI	CGRYCG	1 cut(s)	149
BsiHKAI	GWGCWC	3 cut(s)	481, 515, 1141
BsiHKCI	CYCGRG	2 cut(s)	665, 978
BsiSI	CCGG	2 cut(s)	163, 384
BslI	CCNNNNNNNGG	5 cut(s)	162, 557, 558, 1223, 1265
BsmAI	GTCTC	2 cut(s)	78, 282
BsmI	GAATGC	1 cut(s)	1375
BsnI	GGCC	7 cut(s)	148, 172, 177, 421, 901, 1150, 1227
BsoBI	CYCGRG	2 cut(s)	665, 978
Bsp120I	GGGCCC	1 cut(s)	1148
Bsp1286I	GDGCHC	5 cut(s)	481, 515, 932, 1141, 1152
Bsp143I	GATC	6 cut(s)	586, 607, 727, 1096, 1124, 1460
Bsp19I	CCATGG	1 cut(s)	1209
Bsp68I	TCGCGA	1 cut(s)	617
BspACI	CCGC	5 cut(s)	983, 1280, 1283, 1413, 1443
BspANI	GGCC	7 cut(s)	148, 172, 177, 421, 901, 1150, 1227
BspCNI	CTCAG	4 cut(s)	30, 517, 935, 1403
BspFNI	CGCG	1 cut(s)	617
BspLI	GGNNCC	5 cut(s)	902, 1098, 1150, 1159, 1215
BspMAI	CTGCAG	2 cut(s)	491, 841
BspPI	GGATC	5 cut(s)	602, 735, 1091, 1104, 1468
BsrBI	CCGCTC	1 cut(s)	983
BsrFI	RCCGGY	1 cut(s)	383
BsrI	ACTGG	7 cut(s)	275, 423, 562, 611, 864, 1028, 1161
BssAI	RCCGGY	1 cut(s)	383
BssECI	CCNNGG	5 cut(s)	79, 357, 666, 1152, 1209
BssMI	GATC	6 cut(s)	586, 607, 727, 1096, 1124, 1460
BssNI	GRCGYC	1 cut(s)	336
BssT1I	CCWWGG	1 cut(s)	1209
Bst2UI	CCWGG	3 cut(s)	80, 174, 260
Bst4CI	ACNGT	5 cut(s)	48, 157, 1330, 1344, 1365
BstACI	GRCGYC	1 cut(s)	336
BstAPI	GCANNNNNTGC	3 cut(s)	13, 547, 1472
BstBAI	YACGTR	1 cut(s)	694
BstC8I	GCNNGC	2 cut(s)	272, 951
BstDEI	CTNAG	5 cut(s)	17, 525, 731, 922, 1390
BstDSI	CCRYGG	2 cut(s)	1152, 1209
BstF5I	GGATG	3 cut(s)	676, 780, 1448
BstFNI	CGCG	1 cut(s)	617
BstH2I	RGCGCY	1 cut(s)	525
BstHHI	GCGC	2 cut(s)	7, 524
BstKTI	GATC	6 cut(s)	589, 610, 730, 1099, 1127, 1463
BstMAI	GTCTC	2 cut(s)	78, 282
BstMBI	GATC	6 cut(s)	586, 607, 727, 1096, 1124, 1460
BstMCI	CGRYCG	1 cut(s)	149
BstMWI	GCNNNNNNNGC	9 cut(s)	13, 75, 216, 519, 547, 833, 1282, 1415, 1472
BstNI	CCWGG	3 cut(s)	80, 174, 260
BstNSI	RCATGY	2 cut(s)	485, 1051
BstSCI	CCNGG	3 cut(s)	78, 172, 258
BstSFI	CTRYAG	3 cut(s)	487, 837, 1326
BstSLI	GKGCMC	3 cut(s)	515, 932, 1152
BstSNI	TACGTA	1 cut(s)	694
BstUI	CGCG	1 cut(s)	617
BstV1I	GCAGC	7 cut(s)	823, 958, 1045, 1201, 1252, 1384, 1427
BstV2I	GAAGAC	1 cut(s)	203
BstX2I	RGATCY	3 cut(s)	727, 1096, 1460
BstXI	CCANNNNNNTGG	1 cut(s)	859
BstYI	RGATCY	3 cut(s)	727, 1096, 1460
BstZI	CGGCCG	1 cut(s)	146
BsuRI	GGCC	7 cut(s)	148, 172, 177, 421, 901, 1150, 1227
BtgI	CCRYGG	2 cut(s)	1152, 1209
BtgZI	GCGATG	1 cut(s)	632
BtrI	CACGTC	1 cut(s)	216
BtsCI	GGATG	3 cut(s)	676, 780, 1448
BtsI	GCAGTG	2 cut(s)	291, 960
BtsIMutI	CAGTG	6 cut(s)	291, 430, 960, 1035, 1168, 1335
BtuMI	TCGCGA	1 cut(s)	617
Cac8I	GCNNGC	2 cut(s)	272, 951
CfoI	GCGC	2 cut(s)	7, 524
Cfr10I	RCCGGY	1 cut(s)	383
Cfr13I	GGNCC	7 cut(s)	256, 420, 900, 1148, 1149, 1158, 1430
Csp6I	GTAC	4 cut(s)	141, 278, 779, 1366
CviAII	CATG	8 cut(s)	103, 365, 482, 752, 1048, 1210, 1223, 1322
CviQI	GTAC	4 cut(s)	141, 278, 779, 1366
DdeI	CTNAG	5 cut(s)	17, 525, 731, 922, 1390
DpnI	GATC	6 cut(s)	588, 609, 729, 1098, 1126, 1462
DpnII	GATC	6 cut(s)	586, 607, 727, 1096, 1124, 1460
EaeI	YGGCCR	3 cut(s)	146, 175, 1225
EagI	CGGCCG	1 cut(s)	146
EciI	GGCGGA	1 cut(s)	1269
Ecl136II	GAGCTC	1 cut(s)	1139
EclXI	CGGCCG	1 cut(s)	146
Eco105I	TACGTA	1 cut(s)	694
Eco130I	CCWWGG	1 cut(s)	1209
Eco147I	AGGCCT	1 cut(s)	172
Eco24I	GRGCYC	2 cut(s)	1141, 1152
Eco32I	GATATC	1 cut(s)	990
Eco47I	GGWCC	3 cut(s)	256, 1158, 1430
Eco52I	CGGCCG	1 cut(s)	146
Eco53kI	GAGCTC	1 cut(s)	1139
Eco57I	CTGAAG	3 cut(s)	458, 1389, 1419
Eco88I	CYCGRG	2 cut(s)	665, 978
EcoICRI	GAGCTC	1 cut(s)	1139
EcoO109I	RGGNCCY	1 cut(s)	900
EcoRII	CCWGG	3 cut(s)	78, 172, 258
EcoRV	GATATC	1 cut(s)	990
EcoT14I	CCWWGG	1 cut(s)	1209
EcoT38I	GRGCYC	2 cut(s)	1141, 1152
ErhI	CCWWGG	1 cut(s)	1209
FaeI	CATG	8 cut(s)	106, 368, 485, 755, 1051, 1213, 1226, 1325
FatI	CATG	8 cut(s)	102, 364, 481, 751, 1047, 1209, 1222, 1321
FauI	CCCGC	1 cut(s)	1420
Fnu4HI	GCNGC	8 cut(s)	837, 947, 1034, 1190, 1241, 1283, 1373, 1416
FokI	GGATG	3 cut(s)	683, 787, 1435
FriOI	GRGCYC	2 cut(s)	1141, 1152
Fsp4HI	GCNGC	8 cut(s)	837, 947, 1034, 1190, 1241, 1283, 1373, 1416
FspBI	CTAG	3 cut(s)	378, 656, 942
GlaI	GCGC	2 cut(s)	6, 523
GluI	GCNGC	8 cut(s)	837, 947, 1034, 1190, 1241, 1283, 1373, 1416
GsuI	CTGGAG	1 cut(s)	660
HaeII	RGCGCY	1 cut(s)	525
HaeIII	GGCC	7 cut(s)	148, 172, 177, 421, 901, 1150, 1227
HapII	CCGG	2 cut(s)	163, 384
HhaI	GCGC	2 cut(s)	7, 524
Hin1I	GRCGYC	1 cut(s)	336
Hin1II	CATG	8 cut(s)	106, 368, 485, 755, 1051, 1213, 1226, 1325
Hin6I	GCGC	2 cut(s)	5, 522
HinP1I	GCGC	2 cut(s)	5, 522
HindIII	AAGCTT	1 cut(s)	440
HinfI	GANTC	9 cut(s)	71, 189, 322, 398, 600, 764, 920, 1439, 1454
HpaII	CCGG	2 cut(s)	163, 384
HphI	GGTGA	4 cut(s)	145, 518, 767, 997
Hpy166II	GTNNAC	2 cut(s)	153, 513
Hpy188I	TCNGA	7 cut(s)	52, 438, 683, 925, 1183, 1438, 1453
Hpy188III	TCNNGA	8 cut(s)	19, 193, 287, 616, 665, 1130, 1428, 1458
Hpy8I	GTNNAC	2 cut(s)	153, 513
Hpy99I	CGWCG	1 cut(s)	338
HpyAV	CCTTC	2 cut(s)	815, 1443
HpyCH4III	ACNGT	5 cut(s)	48, 157, 1330, 1344, 1365
HpyCH4IV	ACGT	3 cut(s)	215, 336, 693
HpyF10VI	GCNNNNNNNGC	9 cut(s)	13, 75, 216, 519, 547, 833, 1282, 1415, 1472
HpyF3I	CTNAG	5 cut(s)	17, 525, 731, 922, 1390
HpySE526I	ACGT	3 cut(s)	215, 336, 693
Hsp92I	GRCGYC	1 cut(s)	336
Hsp92II	CATG	8 cut(s)	106, 368, 485, 755, 1051, 1213, 1226, 1325
HspAI	GCGC	2 cut(s)	5, 522
Kzo9I	GATC	6 cut(s)	586, 607, 727, 1096, 1124, 1460
LmnI	GCTCC	4 cut(s)	361, 1136, 1144, 1219
Lsp1109I	GCAGC	7 cut(s)	823, 958, 1045, 1201, 1252, 1384, 1427
LweI	GCATC	5 cut(s)	172, 258, 636, 687, 1484
MaeI	CTAG	3 cut(s)	378, 656, 942
MaeII	ACGT	3 cut(s)	215, 336, 693
MaeIII	GTNAC	3 cut(s)	425, 590, 802
MalI	GATC	6 cut(s)	588, 609, 729, 1098, 1126, 1462
MbiI	CCGCTC	1 cut(s)	983
MboI	GATC	6 cut(s)	586, 607, 727, 1096, 1124, 1460
MboII	GAAGA	6 cut(s)	208, 241, 393, 854, 1056, 1395
MflI	RGATCY	3 cut(s)	727, 1096, 1460
MhlI	GDGCHC	5 cut(s)	481, 515, 932, 1141, 1152
MlsI	TGGCCA	1 cut(s)	1227
MluCI	AATT	1 cut(s)	714
MluNI	TGGCCA	1 cut(s)	1227
MlyI	GAGTC	5 cut(s)	80, 609, 773, 914, 1448
MmeI	TCCRAC	1 cut(s)	808
Mox20I	TGGCCA	1 cut(s)	1227
MscI	TGGCCA	1 cut(s)	1227
MseI	TTAA	2 cut(s)	582, 887
MslI	CAYNNNNRTG	3 cut(s)	296, 317, 1486
Msp20I	TGGCCA	1 cut(s)	1227
MspI	CCGG	2 cut(s)	163, 384
MspR9I	CCNGG	3 cut(s)	80, 174, 260
Mva1269I	GAATGC	1 cut(s)	1375
MvaI	CCWGG	3 cut(s)	80, 174, 260
MvnI	CGCG	1 cut(s)	617
MwoI	GCNNNNNNNGC	9 cut(s)	13, 75, 216, 519, 547, 833, 1282, 1415, 1472
NcoI	CCATGG	1 cut(s)	1209
NdeII	GATC	6 cut(s)	586, 607, 727, 1096, 1124, 1460
NlaIII	CATG	8 cut(s)	106, 368, 485, 755, 1051, 1213, 1226, 1325
NlaIV	GGNNCC	5 cut(s)	902, 1098, 1150, 1159, 1215
NmeAIII	GCCGAG	3 cut(s)	124, 382, 397
NmuCI	GTSAC	1 cut(s)	425
NruI	TCGCGA	1 cut(s)	617
NspI	RCATGY	2 cut(s)	485, 1051
OliI	CACNNNNGTG	2 cut(s)	317, 1486
PaeR7I	CTCGAG	1 cut(s)	978
PceI	AGGCCT	1 cut(s)	172
PciI	ACATGT	1 cut(s)	481
PctI	GAATGC	1 cut(s)	1375
PfeI	GAWTC	4 cut(s)	189, 322, 398, 1454
PflMI	CCANNNNNTGG	1 cut(s)	1223
PkrI	GCNGC	8 cut(s)	838, 948, 1035, 1191, 1242, 1284, 1374, 1417
PleI	GAGTC	5 cut(s)	79, 608, 772, 914, 1447
PpsI	GAGTC	5 cut(s)	79, 608, 772, 914, 1447
Ppu21I	YACGTR	1 cut(s)	694
PscI	ACATGT	1 cut(s)	481
Psp124BI	GAGCTC	1 cut(s)	1141
Psp6I	CCWGG	3 cut(s)	78, 172, 258
PspGI	CCWGG	3 cut(s)	78, 172, 258
PspN4I	GGNNCC	5 cut(s)	902, 1098, 1150, 1159, 1215
PspOMI	GGGCCC	1 cut(s)	1148
PspPI	GGNCC	7 cut(s)	256, 420, 900, 1148, 1149, 1158, 1430
PspXI	VCTCGAGB	1 cut(s)	978
PsrI	GAACNNNNNNTAC	2 cut(s)	1349, 1381
PstI	CTGCAG	2 cut(s)	491, 841
PsuI	RGATCY	3 cut(s)	727, 1096, 1460
RruI	TCGCGA	1 cut(s)	617
RsaI	GTAC	4 cut(s)	142, 279, 780, 1367
RsaNI	GTAC	4 cut(s)	141, 278, 779, 1366
RseI	CAYNNNNRTG	3 cut(s)	296, 317, 1486
SacI	GAGCTC	1 cut(s)	1141
SaqAI	TTAA	2 cut(s)	582, 887
SatI	GCNGC	8 cut(s)	837, 947, 1034, 1190, 1241, 1283, 1373, 1416
Sau3AI	GATC	6 cut(s)	586, 607, 727, 1096, 1124, 1460
Sau96I	GGNCC	7 cut(s)	256, 420, 900, 1148, 1149, 1158, 1430
SchI	GAGTC	5 cut(s)	80, 609, 773, 914, 1448
ScrFI	CCNGG	3 cut(s)	80, 174, 260
SduI	GDGCHC	5 cut(s)	481, 515, 932, 1141, 1152
SfaNI	GCATC	5 cut(s)	172, 258, 636, 687, 1484
SfcI	CTRYAG	3 cut(s)	487, 837, 1326
Sfr274I	CTCGAG	1 cut(s)	978
SinI	GGWCC	3 cut(s)	256, 1158, 1430
SlaI	CTCGAG	1 cut(s)	978
SmiMI	CAYNNNNRTG	3 cut(s)	296, 317, 1486
SmlI	CTYRAG	2 cut(s)	978, 1128
SmoI	CTYRAG	2 cut(s)	978, 1128
SnaBI	TACGTA	1 cut(s)	694
Sse9I	AATT	1 cut(s)	714
SseBI	AGGCCT	1 cut(s)	172
SsiI	CCGC	5 cut(s)	983, 1280, 1283, 1413, 1443
SspMI	CTAG	3 cut(s)	378, 656, 942
SstI	GAGCTC	1 cut(s)	1141
StuI	AGGCCT	1 cut(s)	172
StyD4I	CCNGG	3 cut(s)	78, 172, 258
StyI	CCWWGG	1 cut(s)	1209
TaaI	ACNGT	5 cut(s)	48, 157, 1330, 1344, 1365
TaiI	ACGT	3 cut(s)	218, 339, 696
TaqI	TCGA	3 cut(s)	286, 979, 1123
TaqII	GACCGA	1 cut(s)	384
TasI	AATT	1 cut(s)	714
TatI	WGTACW	2 cut(s)	140, 277
TauI	GCSGC	1 cut(s)	1285
TfiI	GAWTC	4 cut(s)	189, 322, 398, 1454
Tru1I	TTAA	2 cut(s)	582, 887
Tru9I	TTAA	2 cut(s)	582, 887
TscAI	CASTG	6 cut(s)	298, 430, 960, 1035, 1168, 1335
TseFI	GTSAC	1 cut(s)	425
TseI	GCWGC	7 cut(s)	836, 946, 1033, 1189, 1240, 1372, 1415
Tsp45I	GTSAC	1 cut(s)	425
TspDTI	ATGAA	4 cut(s)	635, 687, 951, 1370
TspGWI	ACGGA	2 cut(s)	215, 1077
TspRI	CASTG	6 cut(s)	298, 430, 960, 1035, 1168, 1335
Van91I	CCANNNNNTGG	1 cut(s)	1223
VneI	GTGCAC	1 cut(s)	511
VpaK11BI	GGWCC	3 cut(s)	256, 1158, 1430
XceI	RCATGY	2 cut(s)	485, 1051
XhoI	CTCGAG	1 cut(s)	978
XspI	CTAG	3 cut(s)	378, 656, 942
ZraI	GACGTC	1 cut(s)	337

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.